Wall clock time and date at job start Sat Apr 11 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42904 * 113.99989 * 2 1 4 4 H 1.09001 * 110.91290 * 32.45426 * 3 2 1 5 5 C 1.55282 * 111.09864 * 156.35890 * 3 2 1 6 6 C 1.54322 * 103.00430 * 153.45085 * 5 3 2 7 7 H 1.09009 * 109.88484 * 218.47198 * 6 5 3 8 8 C 1.50702 * 109.88312 * 97.30726 * 6 5 3 9 9 O 1.21278 * 119.99597 * 260.73598 * 8 6 5 10 10 N 1.34778 * 120.00088 * 80.73765 * 8 6 5 11 11 C 1.46927 * 120.62789 * 359.71878 * 10 8 6 12 12 C 1.52763 * 109.00875 * 233.58429 * 11 10 8 13 13 C 1.53035 * 109.38292 * 305.59546 * 12 11 10 14 14 N 1.46503 * 109.46027 * 181.25822 * 13 12 11 15 15 C 1.36936 * 120.00137 * 84.92831 * 14 13 12 16 16 H 1.08008 * 120.00000 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00650 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99132 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00340 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47172 * 60.00266 * 19 17 15 21 21 H 1.48508 * 109.46987 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47265 * 299.99883 * 19 17 15 23 23 C 1.53035 * 109.54276 * 61.23544 * 13 12 11 24 24 C 1.46921 * 120.62831 * 180.02562 * 10 8 6 25 25 N 1.47023 * 107.27149 * 337.88615 * 6 5 3 26 26 C 1.34782 * 125.64580 * 178.91578 * 25 6 5 27 27 C 1.50696 * 119.99679 * 180.02562 * 26 25 6 28 28 O 1.21284 * 120.00147 * 0.02562 * 26 25 6 29 29 C 1.47419 * 108.70585 * 358.94325 * 25 6 5 30 30 H 1.09008 * 109.47084 * 299.99479 * 1 2 3 31 31 H 1.08999 * 109.47334 * 59.99199 * 1 2 3 32 32 H 1.08998 * 109.47519 * 179.97438 * 1 2 3 33 33 H 1.09006 * 110.61769 * 35.10165 * 5 3 2 34 34 H 1.08997 * 110.91483 * 271.93846 * 5 3 2 35 35 H 1.08999 * 109.58655 * 353.41839 * 11 10 8 36 36 H 1.09000 * 109.58339 * 113.85024 * 11 10 8 37 37 H 1.08995 * 109.56609 * 185.55379 * 12 11 10 38 38 H 1.09002 * 109.35859 * 65.49951 * 12 11 10 39 39 H 1.08997 * 109.44768 * 301.22053 * 13 12 11 40 40 H 0.96999 * 120.00096 * 264.92546 * 14 13 12 41 41 H 0.97006 * 119.99388 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.50175 * 178.68195 * 23 13 12 43 43 H 1.09006 * 109.52221 * 58.60560 * 23 13 12 44 44 H 1.09001 * 109.58803 * 246.14935 * 24 10 8 45 45 H 1.08993 * 109.59249 * 6.43929 * 24 10 8 46 46 H 1.08998 * 109.47309 * 0.02562 * 27 26 25 47 47 H 1.09002 * 109.47071 * 120.00582 * 27 26 25 48 48 H 1.09004 * 109.47060 * 239.99831 * 27 26 25 49 49 H 1.09002 * 110.36926 * 142.96521 * 29 25 6 50 50 H 1.08995 * 110.36556 * 265.17805 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3835 2.0104 0.5464 5 6 3.4499 1.2764 0.5809 6 6 4.1233 2.4870 -0.0990 7 1 5.1546 2.2428 -0.3540 8 6 4.0888 3.6779 0.8240 9 8 3.2413 4.5332 0.6788 10 7 4.9997 3.7923 1.8107 11 6 6.0286 2.7612 2.0029 12 6 5.9860 2.2798 3.4521 13 6 6.1168 3.4816 4.3905 14 7 6.1063 3.0188 5.7805 15 6 7.2677 2.5964 6.3703 16 1 8.1916 2.6048 5.8109 17 6 7.2578 2.1574 7.6872 18 7 6.1318 2.1467 8.3687 19 14 8.8420 1.5806 8.4914 20 1 9.8299 2.6894 8.4904 21 1 8.5645 1.1655 9.8900 22 1 9.3909 0.4279 7.7332 23 6 4.9446 4.4387 4.1630 24 6 4.9785 4.9472 2.7187 25 7 3.3619 2.7801 -1.3221 26 6 3.6195 3.7813 -2.1868 27 6 2.7525 3.9662 -3.4054 28 8 4.5492 4.5334 -1.9842 29 6 2.2695 1.7979 -1.4456 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9554 0.3501 0.3076 34 1 3.4352 1.4010 1.6637 35 1 5.8344 1.9222 1.3348 36 1 7.0114 3.1815 1.7892 37 1 6.8084 1.5873 3.6310 38 1 5.0378 1.7751 3.6374 39 1 7.0537 4.0002 4.1876 40 1 5.2767 3.0116 6.2831 41 1 6.1249 1.8403 9.2891 42 1 5.0257 5.2827 4.8480 43 1 4.0059 3.9141 4.3418 44 1 5.8737 5.5496 2.5647 45 1 4.0931 5.5513 2.5211 46 1 1.9750 3.2023 -3.4175 47 1 2.2912 4.9533 -3.3768 48 1 3.3641 3.8769 -4.3033 49 1 1.3760 2.2731 -1.8505 50 1 2.5768 0.9666 -2.0801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996839672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:47 Heat of formation + Delta-G solvation = -113.551995 kcal Electronic energy + Delta-G solvation = -31225.164718 eV Core-core repulsion = 27059.164043 eV Total energy + Delta-G solvation = -4166.000675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.10862 -40.47323 -39.35004 -38.66663 -37.17845 -36.17680 -33.98126 -33.09663 -32.13039 -31.10610 -30.51659 -29.61507 -27.40718 -26.71426 -25.12020 -24.42418 -23.91282 -22.70484 -21.94722 -20.82407 -19.73184 -19.06074 -18.78202 -18.26746 -17.81795 -16.92821 -16.77115 -16.60130 -16.22343 -16.15240 -15.82844 -15.62750 -15.48942 -15.37409 -15.03768 -14.91435 -14.55862 -14.26900 -14.05698 -13.92058 -13.81450 -13.62955 -13.32560 -13.25736 -13.06446 -12.97976 -12.80014 -12.66537 -12.58729 -12.34371 -12.22877 -12.20573 -12.01580 -11.90457 -11.69804 -11.33555 -11.15575 -11.04688 -10.86665 -10.62490 -9.80543 -9.73064 -9.00347 -7.92323 -5.21037 1.36291 1.49051 1.51427 1.52104 1.57326 1.77622 2.04768 2.57654 2.69532 3.23198 3.35029 3.36792 3.41042 3.77557 3.79564 3.86594 3.96579 4.00137 4.05272 4.13213 4.18119 4.32656 4.36738 4.38174 4.47615 4.56455 4.57895 4.59153 4.60815 4.70307 4.72340 4.75566 4.78810 4.82589 4.84230 4.91289 4.95087 5.00106 5.03917 5.09105 5.27403 5.47351 5.53802 5.59963 6.12964 6.28677 6.30707 6.39028 7.00668 7.10691 7.35477 8.10594 8.34132 9.31097 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.002808 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.591436 B = 9969.964161 C =11002.519524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.382 6.382 3 C 0.079 3.921 4 H 0.070 0.930 5 C -0.114 4.114 6 C 0.119 3.881 7 H 0.113 0.887 8 C 0.508 3.492 9 O -0.574 6.574 10 N -0.605 5.605 11 C 0.112 3.888 12 C -0.137 4.137 13 C 0.173 3.827 14 N -0.737 5.737 15 C -0.236 4.236 16 H 0.078 0.922 17 C -0.077 4.077 18 N -0.972 5.972 19 Si 0.971 3.029 20 H -0.280 1.280 21 H -0.299 1.299 22 H -0.276 1.276 23 C -0.124 4.124 24 C 0.124 3.876 25 N -0.602 5.602 26 C 0.521 3.479 27 C -0.159 4.159 28 O -0.590 6.590 29 C 0.083 3.917 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.111 0.889 49 H 0.103 0.897 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 -4.313 -25.811 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.300 6.300 3 C 0.020 3.980 4 H 0.088 0.912 5 C -0.152 4.152 6 C 0.012 3.988 7 H 0.131 0.869 8 C 0.296 3.704 9 O -0.453 6.453 10 N -0.338 5.338 11 C -0.011 4.011 12 C -0.178 4.178 13 C 0.065 3.935 14 N -0.376 5.376 15 C -0.368 4.368 16 H 0.096 0.904 17 C -0.269 4.269 18 N -0.622 5.622 19 Si 0.800 3.200 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.202 1.202 23 C -0.163 4.163 24 C 0.001 3.999 25 N -0.337 5.337 26 C 0.313 3.687 27 C -0.218 4.218 28 O -0.470 6.470 29 C -0.039 4.039 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.124 0.876 47 H 0.115 0.885 48 H 0.129 0.871 49 H 0.121 0.879 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.699 -3.611 -25.828 28.189 hybrid contribution 0.330 0.185 1.515 1.561 sum -10.369 -3.426 -24.313 26.653 Atomic orbital electron populations 1.23054 0.79120 1.04281 1.01040 1.87901 1.21646 1.25575 1.94851 1.23126 0.94247 0.85492 0.95120 0.91166 1.22720 0.95034 0.96786 1.00647 1.21602 0.99414 0.92450 0.85362 0.86925 1.21244 0.80214 0.87851 0.81111 1.90620 1.38543 1.43673 1.72446 1.48197 1.30979 1.23866 1.30723 1.21870 0.91208 0.90774 0.97208 1.22350 1.02051 0.99506 0.93875 1.20390 0.96236 0.92830 0.84055 1.42624 1.07914 1.77413 1.09633 1.19589 0.88943 1.33443 0.94788 0.90365 1.25536 0.99855 1.03646 0.97844 1.69821 1.26904 1.55307 1.10210 0.85253 0.79394 0.78351 0.77022 1.20602 1.22567 1.20160 1.22022 0.98782 0.99733 0.95765 1.21455 1.02899 0.87847 0.87722 1.48347 1.32167 1.31106 1.22034 1.21435 0.84856 0.77589 0.84813 1.21911 1.00281 1.05696 0.93902 1.90715 1.33984 1.45195 1.77155 1.23003 0.90433 0.92316 0.98157 0.94061 0.92033 0.87901 0.85861 0.89793 0.87634 0.90109 0.91064 0.92872 0.93561 0.79786 0.94174 0.91046 0.92828 0.90548 0.90324 0.87571 0.88488 0.87068 0.87871 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.89 113.37 1.23 1.45 16 2 O -0.38 -5.86 10.52 -148.98 -1.57 -7.43 16 3 C 0.08 1.27 3.49 32.03 0.11 1.39 16 4 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 5 C -0.11 -2.01 5.50 31.83 0.17 -1.84 16 6 C 0.12 2.65 2.36 44.59 0.11 2.75 16 7 H 0.11 2.27 6.86 -2.38 -0.02 2.26 16 8 C 0.51 15.32 6.06 87.66 0.53 15.85 16 9 O -0.57 -21.33 15.38 -3.02 -0.05 -21.38 16 10 N -0.60 -17.46 2.98 -819.82 -2.44 -19.91 16 11 C 0.11 2.76 6.14 86.22 0.53 3.29 16 12 C -0.14 -4.32 5.64 30.53 0.17 -4.15 16 13 C 0.17 6.54 2.73 45.01 0.12 6.66 16 14 N -0.74 -36.19 5.12 -322.82 -1.65 -37.85 16 15 C -0.24 -12.71 9.93 84.03 0.83 -11.88 16 16 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 17 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 18 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 19 Si 0.97 45.49 29.55 68.60 2.03 47.51 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 C -0.12 -4.19 5.55 30.66 0.17 -4.02 16 24 C 0.12 3.78 6.43 86.35 0.56 4.34 16 25 N -0.60 -12.29 2.79 -792.19 -2.21 -14.50 16 26 C 0.52 12.46 7.30 87.66 0.64 13.10 16 27 C -0.16 -2.00 10.19 71.23 0.73 -1.28 16 28 O -0.59 -20.34 16.72 -3.04 -0.05 -20.39 16 29 C 0.08 1.05 6.12 86.85 0.53 1.58 16 30 H 0.04 0.46 8.11 -2.38 -0.02 0.44 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.08 1.74 7.82 -2.39 -0.02 1.72 16 35 H 0.11 2.00 5.24 -2.39 -0.01 1.98 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 40 H 0.37 19.91 7.80 -92.71 -0.72 19.18 16 41 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.08 2.56 7.00 -2.39 -0.02 2.55 16 46 H 0.11 0.66 6.08 -2.39 -0.01 0.64 16 47 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.10 0.88 6.94 -2.39 -0.02 0.86 16 50 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.91 396.96 1.46 -77.45 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.22 Total: 31.93 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 6.91 Total: 23.37 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -6.02 Total: -131.08 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -1.66 Total: -49.19 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -78.91 1.46 -77.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996839672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.107 kcal (2) G-P(sol) polarization free energy of solvation -78.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds