Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99904 * 2 1 4 4 H 1.09001 * 110.91936 * 26.09468 * 3 2 1 5 5 C 1.55157 * 111.00350 * 150.00256 * 3 2 1 6 6 C 1.54321 * 103.10033 * 153.66229 * 5 3 2 7 7 H 1.09003 * 109.88132 * 218.14177 * 6 5 3 8 8 C 1.50708 * 109.88173 * 97.13551 * 6 5 3 9 9 O 1.21278 * 120.00011 * 259.99562 * 8 6 5 10 10 N 1.34776 * 119.99648 * 79.99904 * 8 6 5 11 11 C 1.46920 * 120.63677 * 359.71998 * 10 8 6 12 12 C 1.52762 * 109.01137 * 233.58684 * 11 10 8 13 13 C 1.53042 * 109.37876 * 305.58736 * 12 11 10 14 14 C 1.53037 * 109.53889 * 61.23907 * 13 12 11 15 15 H 1.09001 * 109.49848 * 58.58913 * 14 13 12 16 16 N 1.46501 * 109.52390 * 178.66472 * 14 13 12 17 17 C 1.36934 * 120.00098 * 274.85592 * 16 14 13 18 18 H 1.07999 * 120.00427 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99953 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00006 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99878 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47274 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47215 * 120.00284 * 21 19 17 24 24 H 1.48501 * 109.47026 * 239.99867 * 21 19 17 25 25 C 1.46927 * 120.62426 * 180.02562 * 10 8 6 26 26 N 1.47019 * 107.27531 * 337.71659 * 6 5 3 27 27 C 1.34778 * 125.65277 * 178.97403 * 26 6 5 28 28 C 1.50696 * 120.00123 * 180.02562 * 27 26 6 29 29 O 1.21279 * 119.99640 * 0.02562 * 27 26 6 30 30 C 1.47431 * 108.70142 * 358.94050 * 26 6 5 31 31 H 1.09008 * 109.46986 * 300.00260 * 1 2 3 32 32 H 1.09001 * 109.47113 * 60.00000 * 1 2 3 33 33 H 1.08991 * 109.46921 * 180.02562 * 1 2 3 34 34 H 1.09002 * 110.72219 * 35.20926 * 5 3 2 35 35 H 1.09003 * 110.71618 * 272.11539 * 5 3 2 36 36 H 1.09004 * 109.58605 * 353.41894 * 11 10 8 37 37 H 1.08999 * 109.59294 * 113.84273 * 11 10 8 38 38 H 1.08995 * 109.56589 * 185.54947 * 12 11 10 39 39 H 1.09004 * 109.38680 * 65.51078 * 12 11 10 40 40 H 1.09000 * 109.46029 * 301.21374 * 13 12 11 41 41 H 1.09008 * 109.45452 * 181.25914 * 13 12 11 42 42 H 0.97001 * 119.99788 * 94.85046 * 16 14 13 43 43 H 0.97003 * 119.99903 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58409 * 246.15354 * 25 10 8 45 45 H 1.08994 * 109.59001 * 6.43874 * 25 10 8 46 46 H 1.08989 * 109.46870 * 60.00231 * 28 27 26 47 47 H 1.09002 * 109.46951 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.47078 * 300.00341 * 28 27 26 49 49 H 1.08999 * 110.36190 * 142.96411 * 30 26 6 50 50 H 1.08998 * 110.36491 * 265.18090 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3332 2.0330 0.4478 5 6 3.3825 1.3033 0.7242 6 6 4.1258 2.4861 0.0685 7 1 5.1782 2.2349 -0.0639 8 6 3.9972 3.7145 0.9322 9 8 3.1806 4.5674 0.6557 10 7 4.7898 3.8650 2.0119 11 6 5.7796 2.8377 2.3632 12 6 5.5659 2.4171 3.8161 13 6 5.5999 3.6561 4.7137 14 6 4.4710 4.6089 4.3139 15 1 3.5132 4.0965 4.4045 16 7 4.4840 5.7800 5.1939 17 6 3.8382 5.7369 6.4007 18 1 3.3189 4.8397 6.7036 19 6 3.8510 6.8465 7.2348 20 7 4.4843 7.9398 6.8660 21 14 2.9694 6.7878 8.8806 22 1 2.3390 5.4550 9.0573 23 1 3.9464 7.0228 9.9741 24 1 1.9217 7.8395 8.9187 25 6 4.6757 5.0567 2.8637 26 7 3.4974 2.7261 -1.2387 27 6 3.8470 3.6901 -2.1133 28 6 3.1128 3.8220 -3.4227 29 8 4.7525 4.4515 -1.8465 30 6 2.4220 1.7369 -1.4349 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.9120 0.3677 0.5444 35 1 3.2545 1.4731 1.7933 36 1 5.6553 1.9726 1.7117 37 1 6.7845 3.2436 2.2472 38 1 6.3555 1.7283 4.1166 39 1 4.5980 1.9249 3.9117 40 1 6.5590 4.1612 4.5994 41 1 5.4699 3.3550 5.7533 42 1 4.9501 6.5860 4.9218 43 1 4.4929 8.7152 7.4487 44 1 5.5886 5.6477 2.7895 45 1 3.8249 5.6566 2.5409 46 1 2.0571 4.0119 -3.2296 47 1 3.5330 4.6504 -3.9930 48 1 3.2176 2.8988 -3.9926 49 1 1.5769 2.1928 -1.9507 50 1 2.7924 0.8805 -1.9984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999797448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -88.372489 kcal Electronic energy + Delta-G solvation = -31346.694256 eV Core-core repulsion = 27181.785446 eV Total energy + Delta-G solvation = -4164.908810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.07604 -39.30882 -38.54785 -37.27558 -36.27338 -34.51405 -32.45347 -31.90853 -31.24863 -29.93984 -29.25195 -28.03947 -26.86263 -25.38111 -24.15478 -23.40980 -22.06197 -21.91813 -20.71158 -19.59579 -18.59151 -17.81840 -17.26822 -17.16499 -16.85559 -16.05657 -15.62651 -15.37024 -15.20876 -14.93421 -14.84054 -14.54218 -14.08385 -14.05678 -13.72482 -13.51383 -13.34744 -13.21192 -13.03243 -12.95806 -12.87863 -12.70224 -12.41238 -12.26651 -12.13665 -12.06279 -11.71712 -11.23376 -11.08608 -10.92576 -10.90790 -10.65613 -10.40277 -10.33816 -10.23789 -10.05283 -9.95274 -9.81007 -9.67757 -8.91545 -8.83072 -8.36694 -6.98379 -5.77316 -3.07020 2.34658 2.57669 2.78298 3.14736 3.35993 3.42959 3.48378 3.50722 3.98031 4.10233 4.38734 4.56718 4.58705 4.64996 4.77965 4.86605 4.91076 4.97917 5.01838 5.03232 5.11860 5.15033 5.18668 5.27906 5.32229 5.35827 5.44543 5.48515 5.53435 5.56309 5.59314 5.67186 5.76809 5.83800 5.90381 6.05786 6.18055 6.26137 6.40254 6.55580 6.70498 6.72180 6.88556 7.05262 7.22302 7.58959 7.69398 7.99890 8.33367 8.40718 9.51629 10.07394 10.42432 11.45221 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.002967 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.834591 B = 9435.483002 C =10110.948767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.076 3.924 4 H 0.087 0.913 5 C -0.120 4.120 6 C 0.121 3.879 7 H 0.102 0.898 8 C 0.511 3.489 9 O -0.528 6.528 10 N -0.601 5.601 11 C 0.105 3.895 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.170 3.830 15 H 0.049 0.951 16 N -0.721 5.721 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.108 3.892 26 N -0.602 5.602 27 C 0.533 3.467 28 C -0.166 4.166 29 O -0.530 6.530 30 C 0.085 3.915 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 -19.737 -19.638 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.290 6.290 3 C 0.017 3.983 4 H 0.105 0.895 5 C -0.158 4.158 6 C 0.014 3.986 7 H 0.120 0.880 8 C 0.296 3.704 9 O -0.404 6.404 10 N -0.335 5.335 11 C -0.018 4.018 12 C -0.171 4.171 13 C -0.178 4.178 14 C 0.059 3.941 15 H 0.067 0.933 16 N -0.362 5.362 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.015 4.015 26 N -0.339 5.339 27 C 0.322 3.678 28 C -0.225 4.225 29 O -0.405 6.405 30 C -0.038 4.038 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.099 0.901 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.355 -18.965 -19.570 27.457 hybrid contribution -0.441 0.482 0.981 1.179 sum -3.796 -18.483 -18.588 26.487 Atomic orbital electron populations 1.22883 0.80364 1.03098 1.00514 1.87898 1.20256 1.26095 1.94718 1.23324 0.95092 0.85591 0.94320 0.89497 1.22733 0.94777 0.97319 1.00949 1.21520 0.99492 0.93587 0.84050 0.88009 1.20565 0.80950 0.87819 0.81044 1.90684 1.36076 1.43196 1.70452 1.48038 1.36797 1.22102 1.26602 1.21731 0.92411 0.90663 0.96961 1.21865 1.01972 0.99060 0.94249 1.22284 1.00931 0.95233 0.99352 1.20458 0.96131 0.89580 0.87973 0.93337 1.42325 1.63788 1.11881 1.18240 1.19242 1.25699 0.98274 0.93724 0.91122 1.24757 1.01040 0.96105 0.98967 1.69676 1.47160 1.03454 1.37600 0.86120 0.78918 0.77223 0.83931 1.20565 1.21855 1.21847 1.21980 1.02937 0.86198 0.90352 1.48121 1.36021 1.32843 1.16904 1.20476 0.83704 0.78355 0.85228 1.21875 1.01837 1.04667 0.94163 1.90761 1.30955 1.41235 1.77537 1.22805 0.90555 0.92254 0.98214 0.93476 0.93760 0.89241 0.88088 0.88624 0.90516 0.91201 0.91155 0.91881 0.92407 0.91515 0.78167 0.93498 0.91694 0.89062 0.89343 0.88799 0.89506 0.90089 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.26 16 2 O -0.37 -3.08 10.53 -35.23 -0.37 -3.45 16 3 C 0.08 0.66 3.57 -24.32 -0.09 0.58 16 4 H 0.09 0.87 7.83 -51.93 -0.41 0.46 16 5 C -0.12 -1.07 5.41 -24.90 -0.13 -1.21 16 6 C 0.12 1.43 2.36 -68.10 -0.16 1.27 16 7 H 0.10 1.09 6.90 -51.93 -0.36 0.73 16 8 C 0.51 8.28 6.07 -10.98 -0.07 8.21 16 9 O -0.53 -10.71 15.34 5.56 0.09 -10.63 16 10 N -0.60 -9.40 2.98 -173.06 -0.52 -9.92 16 11 C 0.11 1.25 6.13 -3.94 -0.02 1.22 16 12 C -0.13 -1.64 6.07 -26.83 -0.16 -1.80 16 13 C -0.14 -2.34 5.47 -26.69 -0.15 -2.48 16 14 C 0.17 3.42 2.92 -67.83 -0.20 3.22 16 15 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 16 N -0.72 -18.25 5.12 -53.33 -0.27 -18.53 16 17 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 C 0.11 2.04 5.90 -3.73 -0.02 2.01 16 26 N -0.60 -6.89 2.79 -164.01 -0.46 -7.35 16 27 C 0.53 7.04 7.29 -10.99 -0.08 6.96 16 28 C -0.17 -1.35 9.33 36.00 0.34 -1.02 16 29 O -0.53 -9.57 16.70 5.56 0.09 -9.48 16 30 C 0.09 0.67 6.45 -2.26 -0.01 0.66 16 31 H 0.05 0.29 8.12 -51.92 -0.42 -0.13 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.92 7.82 -51.93 -0.41 0.51 16 36 H 0.08 0.68 5.22 -51.93 -0.27 0.41 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 42 H 0.38 10.39 7.80 -40.82 -0.32 10.07 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.96 7.00 -51.93 -0.36 1.59 16 46 H 0.09 0.61 7.85 -51.94 -0.41 0.20 16 47 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 48 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.52 7.48 -51.93 -0.39 0.13 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -36.84 398.55 -8.02 -44.86 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.38 Total: 7.00 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 0.09 Total: 11.65 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -0.52 Total: -63.42 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.19 Total: -23.56 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.84 -8.02 -44.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999797448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.512 kcal (2) G-P(sol) polarization free energy of solvation -36.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds