Wall clock time and date at job start Sat Apr 11 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99904 * 2 1 4 4 H 1.09001 * 110.91936 * 26.09468 * 3 2 1 5 5 C 1.55157 * 111.00350 * 150.00256 * 3 2 1 6 6 C 1.54321 * 103.10033 * 153.66229 * 5 3 2 7 7 H 1.09003 * 109.88132 * 218.14177 * 6 5 3 8 8 C 1.50708 * 109.88173 * 97.13551 * 6 5 3 9 9 O 1.21278 * 120.00011 * 259.99562 * 8 6 5 10 10 N 1.34776 * 119.99648 * 79.99904 * 8 6 5 11 11 C 1.46920 * 120.63677 * 359.71998 * 10 8 6 12 12 C 1.52762 * 109.01137 * 233.58684 * 11 10 8 13 13 C 1.53042 * 109.37876 * 305.58736 * 12 11 10 14 14 C 1.53037 * 109.53889 * 61.23907 * 13 12 11 15 15 H 1.09001 * 109.49848 * 58.58913 * 14 13 12 16 16 N 1.46501 * 109.52390 * 178.66472 * 14 13 12 17 17 C 1.36934 * 120.00098 * 274.85592 * 16 14 13 18 18 H 1.07999 * 120.00427 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99953 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00006 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99878 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47274 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47215 * 120.00284 * 21 19 17 24 24 H 1.48501 * 109.47026 * 239.99867 * 21 19 17 25 25 C 1.46927 * 120.62426 * 180.02562 * 10 8 6 26 26 N 1.47019 * 107.27531 * 337.71659 * 6 5 3 27 27 C 1.34778 * 125.65277 * 178.97403 * 26 6 5 28 28 C 1.50696 * 120.00123 * 180.02562 * 27 26 6 29 29 O 1.21279 * 119.99640 * 0.02562 * 27 26 6 30 30 C 1.47431 * 108.70142 * 358.94050 * 26 6 5 31 31 H 1.09008 * 109.46986 * 300.00260 * 1 2 3 32 32 H 1.09001 * 109.47113 * 60.00000 * 1 2 3 33 33 H 1.08991 * 109.46921 * 180.02562 * 1 2 3 34 34 H 1.09002 * 110.72219 * 35.20926 * 5 3 2 35 35 H 1.09003 * 110.71618 * 272.11539 * 5 3 2 36 36 H 1.09004 * 109.58605 * 353.41894 * 11 10 8 37 37 H 1.08999 * 109.59294 * 113.84273 * 11 10 8 38 38 H 1.08995 * 109.56589 * 185.54947 * 12 11 10 39 39 H 1.09004 * 109.38680 * 65.51078 * 12 11 10 40 40 H 1.09000 * 109.46029 * 301.21374 * 13 12 11 41 41 H 1.09008 * 109.45452 * 181.25914 * 13 12 11 42 42 H 0.97001 * 119.99788 * 94.85046 * 16 14 13 43 43 H 0.97003 * 119.99903 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58409 * 246.15354 * 25 10 8 45 45 H 1.08994 * 109.59001 * 6.43874 * 25 10 8 46 46 H 1.08989 * 109.46870 * 60.00231 * 28 27 26 47 47 H 1.09002 * 109.46951 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.47078 * 300.00341 * 28 27 26 49 49 H 1.08999 * 110.36190 * 142.96411 * 30 26 6 50 50 H 1.08998 * 110.36491 * 265.18090 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3332 2.0330 0.4478 5 6 3.3825 1.3033 0.7242 6 6 4.1258 2.4861 0.0685 7 1 5.1782 2.2349 -0.0639 8 6 3.9972 3.7145 0.9322 9 8 3.1806 4.5674 0.6557 10 7 4.7898 3.8650 2.0119 11 6 5.7796 2.8377 2.3632 12 6 5.5659 2.4171 3.8161 13 6 5.5999 3.6561 4.7137 14 6 4.4710 4.6089 4.3139 15 1 3.5132 4.0965 4.4045 16 7 4.4840 5.7800 5.1939 17 6 3.8382 5.7369 6.4007 18 1 3.3189 4.8397 6.7036 19 6 3.8510 6.8465 7.2348 20 7 4.4843 7.9398 6.8660 21 14 2.9694 6.7878 8.8806 22 1 2.3390 5.4550 9.0573 23 1 3.9464 7.0228 9.9741 24 1 1.9217 7.8395 8.9187 25 6 4.6757 5.0567 2.8637 26 7 3.4974 2.7261 -1.2387 27 6 3.8470 3.6901 -2.1133 28 6 3.1128 3.8220 -3.4227 29 8 4.7525 4.4515 -1.8465 30 6 2.4220 1.7369 -1.4349 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.9120 0.3677 0.5444 35 1 3.2545 1.4731 1.7933 36 1 5.6553 1.9726 1.7117 37 1 6.7845 3.2436 2.2472 38 1 6.3555 1.7283 4.1166 39 1 4.5980 1.9249 3.9117 40 1 6.5590 4.1612 4.5994 41 1 5.4699 3.3550 5.7533 42 1 4.9501 6.5860 4.9218 43 1 4.4929 8.7152 7.4487 44 1 5.5886 5.6477 2.7895 45 1 3.8249 5.6566 2.5409 46 1 2.0571 4.0119 -3.2296 47 1 3.5330 4.6504 -3.9930 48 1 3.2176 2.8988 -3.9926 49 1 1.5769 2.1928 -1.9507 50 1 2.7924 0.8805 -1.9984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999797448.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:57 Heat of formation + Delta-G solvation = -116.080186 kcal Electronic energy + Delta-G solvation = -31347.895752 eV Core-core repulsion = 27181.785446 eV Total energy + Delta-G solvation = -4166.110306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.09907 -40.47510 -39.33384 -38.63174 -37.16598 -36.26710 -33.99509 -32.93435 -32.79383 -30.87615 -30.27041 -29.38636 -27.36280 -26.61480 -25.90746 -24.52429 -23.42091 -22.76414 -21.89435 -20.84978 -19.74542 -19.15906 -18.78095 -18.22146 -17.78072 -16.92842 -16.87430 -16.49165 -16.22800 -16.14906 -15.81679 -15.66995 -15.56688 -15.36552 -15.08561 -14.76992 -14.60794 -14.22050 -14.19830 -13.92403 -13.80874 -13.72542 -13.51513 -13.20640 -13.04341 -12.95915 -12.88677 -12.65838 -12.41972 -12.31144 -12.22112 -12.09626 -11.94101 -11.85196 -11.73837 -11.64046 -11.13440 -11.02666 -10.94954 -10.61585 -9.80188 -9.73178 -9.06608 -7.97813 -5.28192 1.35908 1.44409 1.46210 1.52741 1.56167 1.78562 2.00562 2.54051 2.70547 3.25631 3.34450 3.36392 3.38700 3.74277 3.80694 3.96615 3.97533 4.02676 4.05108 4.10197 4.20057 4.27826 4.31959 4.42302 4.44142 4.54288 4.57068 4.58068 4.61618 4.72281 4.74727 4.76615 4.79059 4.83571 4.85893 4.92107 4.96268 5.03908 5.10627 5.15999 5.37387 5.39385 5.48448 5.57104 6.12770 6.23178 6.31689 6.40458 7.02130 7.11792 7.28722 8.01004 8.25616 9.25938 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.002967 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.834591 B = 9435.483002 C =10110.948767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.376 6.376 3 C 0.077 3.923 4 H 0.066 0.934 5 C -0.113 4.113 6 C 0.123 3.877 7 H 0.119 0.881 8 C 0.501 3.499 9 O -0.580 6.580 10 N -0.602 5.602 11 C 0.100 3.900 12 C -0.121 4.121 13 C -0.128 4.128 14 C 0.171 3.829 15 H 0.035 0.965 16 N -0.737 5.737 17 C -0.238 4.238 18 H 0.076 0.924 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.975 3.025 22 H -0.264 1.264 23 H -0.291 1.291 24 H -0.295 1.295 25 C 0.121 3.879 26 N -0.603 5.603 27 C 0.519 3.481 28 C -0.158 4.158 29 O -0.592 6.592 30 C 0.086 3.914 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.123 0.877 49 H 0.097 0.903 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -23.819 -20.790 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.294 6.294 3 C 0.018 3.982 4 H 0.084 0.916 5 C -0.151 4.151 6 C 0.015 3.985 7 H 0.137 0.863 8 C 0.289 3.711 9 O -0.459 6.459 10 N -0.335 5.335 11 C -0.021 4.021 12 C -0.159 4.159 13 C -0.169 4.169 14 C 0.062 3.938 15 H 0.053 0.947 16 N -0.377 5.377 17 C -0.370 4.370 18 H 0.094 0.906 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.804 3.196 22 H -0.188 1.188 23 H -0.218 1.218 24 H -0.223 1.223 25 C -0.003 4.003 26 N -0.338 5.338 27 C 0.311 3.689 28 C -0.217 4.217 29 O -0.472 6.472 30 C -0.036 4.036 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.203 0.797 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.121 0.879 47 H 0.107 0.893 48 H 0.141 0.859 49 H 0.115 0.885 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.688 -23.167 -20.741 31.313 hybrid contribution -0.397 1.706 1.282 2.171 sum -4.085 -21.461 -19.460 29.256 Atomic orbital electron populations 1.23057 0.79276 1.04307 1.00831 1.87879 1.21416 1.25339 1.94780 1.23196 0.94691 0.85587 0.94771 0.91600 1.22774 0.94927 0.97111 1.00250 1.21646 1.01135 0.91959 0.83723 0.86336 1.21548 0.79785 0.88729 0.80999 1.90651 1.38249 1.45345 1.71687 1.48147 1.37576 1.21716 1.26070 1.22067 0.91648 0.90892 0.97476 1.21816 1.03870 0.97057 0.93172 1.22078 0.98726 0.96481 0.99580 1.20598 0.96864 0.88510 0.87846 0.94657 1.42533 1.63648 1.13057 1.18476 1.19603 1.24782 0.98223 0.94359 0.90567 1.25609 1.02551 0.95928 1.02775 1.69841 1.49202 1.04125 1.38935 0.85048 0.77490 0.77628 0.79441 1.18809 1.21778 1.22271 1.21519 1.01033 0.87527 0.90261 1.48295 1.36445 1.32894 1.16197 1.21438 0.83165 0.77582 0.86722 1.21909 1.01676 1.06379 0.91725 1.90725 1.33857 1.43580 1.79068 1.23036 0.90199 0.92315 0.98077 0.94206 0.92501 0.87591 0.84855 0.89288 0.86489 0.90398 0.87443 0.91160 0.92916 0.93049 0.79704 0.93996 0.92288 0.92679 0.87896 0.89313 0.85914 0.88482 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.85 113.37 1.23 1.43 16 2 O -0.38 -5.05 10.53 -148.98 -1.57 -6.62 16 3 C 0.08 1.16 3.57 32.16 0.11 1.28 16 4 H 0.07 1.27 7.83 -2.39 -0.02 1.25 16 5 C -0.11 -1.68 5.41 31.78 0.17 -1.50 16 6 C 0.12 2.66 2.36 44.60 0.11 2.77 16 7 H 0.12 2.18 6.90 -2.39 -0.02 2.16 16 8 C 0.50 16.38 6.07 87.66 0.53 16.91 16 9 O -0.58 -24.68 15.34 -3.02 -0.05 -24.73 16 10 N -0.60 -18.83 2.98 -819.82 -2.44 -21.27 16 11 C 0.10 2.12 6.13 86.22 0.53 2.65 16 12 C -0.12 -2.63 6.07 30.53 0.19 -2.45 16 13 C -0.13 -4.30 5.47 30.62 0.17 -4.14 16 14 C 0.17 7.12 2.92 45.05 0.13 7.25 16 15 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 16 N -0.74 -38.91 5.12 -322.64 -1.65 -40.56 16 17 C -0.24 -13.55 9.93 84.03 0.83 -12.71 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 20 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 21 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 25 C 0.12 4.81 5.90 86.35 0.51 5.32 16 26 N -0.60 -12.70 2.79 -791.21 -2.21 -14.91 16 27 C 0.52 13.33 7.29 87.66 0.64 13.97 16 28 C -0.16 -2.26 9.33 71.23 0.66 -1.59 16 29 O -0.59 -21.95 16.70 -3.03 -0.05 -22.00 16 30 C 0.09 1.08 6.45 87.02 0.56 1.64 16 31 H 0.04 0.43 8.12 -2.38 -0.02 0.42 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.48 7.82 -2.39 -0.02 1.46 16 36 H 0.12 1.58 5.22 -2.38 -0.01 1.57 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.37 21.22 7.80 -92.71 -0.72 20.50 16 43 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.05 2.57 7.00 -2.39 -0.02 2.55 16 46 H 0.10 1.18 7.85 -2.39 -0.02 1.16 16 47 H 0.09 1.37 8.12 -2.39 -0.02 1.35 16 48 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.10 0.93 7.48 -2.39 -0.02 0.91 16 50 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -86.38 398.55 1.40 -84.98 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.21 Total: 30.12 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 6.84 Total: 26.78 kcal Atomic # 7 Polarization: -131.55 SS G_CDS: -6.02 Total: -137.57 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -1.67 Total: -53.35 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -86.38 1.40 -84.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999797448.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.099 kcal (2) G-P(sol) polarization free energy of solvation -86.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds