Wall clock time and date at job start Sat Apr 11 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00363 * 2 1 4 4 H 1.08996 * 110.88642 * 32.41910 * 3 2 1 5 5 C 1.55153 * 111.03827 * 156.32890 * 3 2 1 6 6 C 1.54330 * 102.94220 * 153.58791 * 5 3 2 7 7 H 1.09000 * 110.00989 * 218.31954 * 6 5 3 8 8 C 1.50698 * 109.88268 * 97.22065 * 6 5 3 9 9 O 1.21276 * 120.00564 * 260.74126 * 8 6 5 10 10 N 1.34784 * 119.99966 * 80.73825 * 8 6 5 11 11 C 1.46928 * 120.62829 * 359.97438 * 10 8 6 12 12 C 1.53191 * 108.77343 * 126.41175 * 11 10 8 13 13 C 1.53039 * 109.31416 * 54.63452 * 12 11 10 14 14 C 1.53070 * 109.65812 * 298.69913 * 13 12 11 15 15 H 1.08997 * 109.38860 * 301.27396 * 14 13 12 16 16 N 1.46498 * 109.62217 * 181.16721 * 14 13 12 17 17 C 1.36936 * 119.99993 * 85.10793 * 16 14 13 18 18 H 1.07997 * 119.99979 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00011 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99724 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99974 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46737 * 90.00547 * 21 19 17 23 23 H 1.48500 * 109.46711 * 210.00077 * 21 19 17 24 24 H 1.48494 * 109.46996 * 330.00227 * 21 19 17 25 25 C 1.46919 * 120.63188 * 179.97438 * 10 8 6 26 26 N 1.47023 * 107.26961 * 337.80379 * 6 5 3 27 27 C 1.34772 * 125.64668 * 178.89990 * 26 6 5 28 28 C 1.50696 * 120.00095 * 180.02562 * 27 26 6 29 29 O 1.21288 * 120.00273 * 0.02562 * 27 26 6 30 30 C 1.47425 * 108.70220 * 358.94463 * 26 6 5 31 31 H 1.09001 * 109.47472 * 300.00664 * 1 2 3 32 32 H 1.09007 * 109.46629 * 60.00283 * 1 2 3 33 33 H 1.09003 * 109.47446 * 180.02562 * 1 2 3 34 34 H 1.09000 * 110.72522 * 35.22927 * 5 3 2 35 35 H 1.09001 * 110.72220 * 271.95006 * 5 3 2 36 36 H 1.08998 * 109.58787 * 246.20220 * 11 10 8 37 37 H 1.09007 * 109.58600 * 6.48533 * 11 10 8 38 38 H 1.09002 * 109.49529 * 174.58688 * 12 11 10 39 39 H 1.09001 * 109.49774 * 294.68244 * 12 11 10 40 40 H 1.09007 * 109.45640 * 58.65727 * 13 12 11 41 41 H 1.09000 * 109.45893 * 178.62518 * 13 12 11 42 42 H 0.97005 * 120.00342 * 265.10679 * 16 14 13 43 43 H 0.96998 * 120.00214 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.58751 * 353.37646 * 25 10 8 45 45 H 1.08996 * 109.58750 * 113.65831 * 25 10 8 46 46 H 1.09000 * 109.47206 * 0.02562 * 28 27 26 47 47 H 1.08999 * 109.47397 * 120.00464 * 28 27 26 48 48 H 1.09001 * 109.47714 * 240.00287 * 28 27 26 49 49 H 1.08999 * 110.36785 * 142.96536 * 30 26 6 50 50 H 1.08998 * 110.36158 * 265.28686 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3830 2.0101 0.5459 5 6 3.4484 1.2747 0.5814 6 6 4.1210 2.4873 -0.0960 7 1 5.1536 2.2474 -0.3499 8 6 4.0838 3.6767 0.8286 9 8 3.2354 4.5312 0.6837 10 7 4.9934 3.7910 1.8166 11 6 6.0269 2.7638 2.0051 12 6 7.4003 3.4424 2.0156 13 6 7.4111 4.5468 3.0749 14 6 6.3547 5.6000 2.7317 15 1 6.5648 6.0154 1.7461 16 7 6.3848 6.6708 3.7310 17 6 7.2680 7.7085 3.5961 18 1 7.9427 7.7373 2.7533 19 6 7.2969 8.7230 4.5432 20 7 8.1462 9.7201 4.4138 21 14 6.1304 8.6728 6.0014 22 1 6.7732 7.9445 7.1246 23 1 5.8117 10.0590 6.4281 24 1 4.8792 7.9751 5.6105 25 6 4.9702 4.9450 2.7256 26 7 3.3607 2.7811 -1.3196 27 6 3.6178 3.7840 -2.1824 28 6 2.7520 3.9695 -3.4018 29 8 4.5460 4.5373 -1.9774 30 6 2.2697 1.7976 -1.4457 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 3.9556 0.3496 0.3074 35 1 3.4295 1.3992 1.6641 36 1 5.8648 2.2522 2.9538 37 1 5.9791 2.0433 1.1886 38 1 8.1683 2.7054 2.2504 39 1 7.5991 3.8762 1.0356 40 1 7.1878 4.1159 4.0510 41 1 8.3951 5.0150 3.1013 42 1 5.7790 6.6448 4.4882 43 1 8.1662 10.4291 5.0754 44 1 4.2270 5.6651 2.3832 45 1 4.7194 4.6120 3.7327 46 1 1.9757 3.2044 -3.4160 47 1 2.2892 4.9558 -3.3722 48 1 3.3647 3.8825 -4.2991 49 1 1.3761 2.2722 -1.8510 50 1 2.5796 0.9667 -2.0795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999797456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:03 Heat of formation + Delta-G solvation = -81.225835 kcal Electronic energy + Delta-G solvation = -31340.709980 eV Core-core repulsion = 27176.111073 eV Total energy + Delta-G solvation = -4164.598908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13927 -39.37518 -38.60729 -37.35699 -36.31746 -34.64739 -32.50087 -31.91770 -31.38259 -30.06265 -29.36767 -28.39389 -26.97691 -25.45167 -24.12112 -23.34402 -22.14678 -21.79977 -20.63044 -19.68151 -18.79511 -17.82485 -17.60717 -17.31329 -16.94836 -16.11583 -15.69682 -15.38042 -15.27471 -15.09701 -14.79952 -14.57117 -14.15152 -13.95422 -13.90136 -13.63245 -13.42946 -13.27433 -13.09981 -13.05576 -12.76629 -12.70378 -12.49454 -12.30851 -12.21376 -12.10034 -11.79765 -11.34000 -11.25160 -11.06417 -10.98179 -10.64429 -10.48861 -10.37323 -10.31876 -10.06403 -9.95199 -9.85549 -9.56805 -8.90748 -8.85977 -8.45234 -7.26413 -5.74229 -3.10653 2.30133 2.56733 2.73936 3.05648 3.29354 3.39703 3.42487 3.47445 3.91260 4.04242 4.32649 4.54145 4.57355 4.61331 4.68855 4.78435 4.82576 4.90987 4.94804 4.98363 5.10336 5.12772 5.17675 5.23232 5.24174 5.30479 5.35970 5.37777 5.45377 5.46696 5.55471 5.57199 5.66744 5.74062 5.85899 5.95752 6.06839 6.14382 6.36742 6.48262 6.61459 6.62269 6.84286 6.99243 7.20144 7.50057 8.00301 8.01727 8.26249 8.44181 9.21853 9.94027 10.13107 11.44024 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.002932 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.561048 B = 9546.061534 C = 9972.122881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.076 3.924 4 H 0.085 0.915 5 C -0.115 4.115 6 C 0.120 3.880 7 H 0.105 0.895 8 C 0.511 3.489 9 O -0.528 6.528 10 N -0.602 5.602 11 C 0.105 3.895 12 C -0.134 4.134 13 C -0.136 4.136 14 C 0.172 3.828 15 H 0.060 0.940 16 N -0.745 5.745 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.106 3.894 26 N -0.603 5.603 27 C 0.531 3.469 28 C -0.166 4.166 29 O -0.524 6.524 30 C 0.082 3.918 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.697 -25.858 -12.267 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.017 3.983 4 H 0.103 0.897 5 C -0.153 4.153 6 C 0.012 3.988 7 H 0.122 0.878 8 C 0.297 3.703 9 O -0.404 6.404 10 N -0.336 5.336 11 C -0.018 4.018 12 C -0.173 4.173 13 C -0.177 4.177 14 C 0.062 3.938 15 H 0.078 0.922 16 N -0.387 5.387 17 C -0.371 4.371 18 H 0.109 0.891 19 C -0.191 4.191 20 N -0.581 5.581 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.017 4.017 26 N -0.340 5.340 27 C 0.321 3.679 28 C -0.226 4.226 29 O -0.399 6.399 30 C -0.042 4.042 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.360 -24.877 -12.397 31.285 hybrid contribution -0.892 0.307 1.178 1.509 sum -15.252 -24.571 -11.219 31.019 Atomic orbital electron populations 1.22865 0.80420 1.03107 1.00453 1.87907 1.20210 1.26115 1.94784 1.23245 0.94896 0.85377 0.94815 0.89682 1.22670 0.94348 0.97066 1.01260 1.21543 0.98299 0.93299 0.85624 0.87784 1.20585 0.81486 0.87445 0.80800 1.90682 1.37092 1.41770 1.70811 1.48026 1.30106 1.23826 1.31619 1.21853 0.88168 0.90011 1.01719 1.21931 0.95418 0.98853 1.01111 1.22228 1.02164 0.96021 0.97242 1.20441 0.91042 0.88198 0.94102 0.92241 1.42663 1.44646 1.24670 1.26732 1.19052 1.11710 0.98047 1.08304 0.89150 1.24665 0.98888 0.96836 0.98683 1.69700 1.38939 1.12474 1.36984 0.86547 0.81308 0.76942 0.83749 1.21091 1.21718 1.20296 1.21964 1.00114 0.87450 0.92180 1.48177 1.31885 1.31000 1.22914 1.20515 0.85221 0.78382 0.83777 1.21866 1.00155 1.04697 0.95859 1.90803 1.31173 1.42657 1.75267 1.22791 0.90723 0.92293 0.98344 0.93615 0.93725 0.89224 0.88009 0.88801 0.91108 0.90388 0.91069 0.91492 0.92587 0.91030 0.80656 0.93053 0.89009 0.91931 0.90634 0.88456 0.88594 0.89994 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.89 101.05 1.10 1.24 16 2 O -0.37 -2.73 10.51 -35.23 -0.37 -3.10 16 3 C 0.08 0.59 3.49 -24.58 -0.09 0.51 16 4 H 0.09 0.75 7.90 -51.93 -0.41 0.34 16 5 C -0.12 -0.91 5.81 -24.90 -0.14 -1.06 16 6 C 0.12 1.35 2.37 -68.10 -0.16 1.19 16 7 H 0.10 1.10 6.59 -51.93 -0.34 0.76 16 8 C 0.51 7.96 6.05 -10.98 -0.07 7.89 16 9 O -0.53 -10.34 15.38 5.56 0.09 -10.25 16 10 N -0.60 -8.95 2.97 -172.79 -0.51 -9.46 16 11 C 0.11 1.17 6.19 -3.71 -0.02 1.15 16 12 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 13 C -0.14 -2.32 5.47 -26.67 -0.15 -2.46 16 14 C 0.17 3.50 2.92 -67.81 -0.20 3.30 16 15 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 16 N -0.74 -18.13 4.93 -53.31 -0.26 -18.39 16 17 C -0.24 -6.98 10.41 -15.06 -0.16 -7.14 16 18 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 20 N -0.93 -29.91 13.97 55.49 0.78 -29.13 16 21 Si 0.88 22.54 27.74 -169.99 -4.71 17.82 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 24 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 25 C 0.11 1.88 5.90 -3.73 -0.02 1.86 16 26 N -0.60 -6.77 2.79 -164.32 -0.46 -7.23 16 27 C 0.53 7.14 7.30 -10.99 -0.08 7.06 16 28 C -0.17 -1.40 10.19 36.00 0.37 -1.03 16 29 O -0.52 -9.82 16.72 5.55 0.09 -9.72 16 30 C 0.08 0.61 6.12 -2.53 -0.02 0.59 16 31 H 0.05 0.22 8.11 -51.93 -0.42 -0.20 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.74 7.82 -51.93 -0.41 0.33 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.66 5.35 -51.92 -0.28 0.38 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.36 8.56 5.66 -40.82 -0.23 8.32 16 43 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 44 H 0.09 1.87 7.01 -51.93 -0.36 1.51 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.42 6.08 -51.93 -0.32 0.10 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.08 0.49 6.94 -51.93 -0.36 0.13 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -38.60 394.08 -7.53 -46.14 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.21 Total: 6.15 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 0.11 Total: 11.25 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.46 Total: -64.22 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.19 Total: -23.08 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.60 -7.53 -46.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999797456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.090 kcal (2) G-P(sol) polarization free energy of solvation -38.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds