Wall clock time and date at job start Sat Apr 11 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00363 * 2 1 4 4 H 1.08996 * 110.88642 * 32.41910 * 3 2 1 5 5 C 1.55153 * 111.03827 * 156.32890 * 3 2 1 6 6 C 1.54330 * 102.94220 * 153.58791 * 5 3 2 7 7 H 1.09000 * 110.00989 * 218.31954 * 6 5 3 8 8 C 1.50698 * 109.88268 * 97.22065 * 6 5 3 9 9 O 1.21276 * 120.00564 * 260.74126 * 8 6 5 10 10 N 1.34784 * 119.99966 * 80.73825 * 8 6 5 11 11 C 1.46928 * 120.62829 * 359.97438 * 10 8 6 12 12 C 1.53191 * 108.77343 * 126.41175 * 11 10 8 13 13 C 1.53039 * 109.31416 * 54.63452 * 12 11 10 14 14 C 1.53070 * 109.65812 * 298.69913 * 13 12 11 15 15 H 1.08997 * 109.38860 * 301.27396 * 14 13 12 16 16 N 1.46498 * 109.62217 * 181.16721 * 14 13 12 17 17 C 1.36936 * 119.99993 * 85.10793 * 16 14 13 18 18 H 1.07997 * 119.99979 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00011 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99724 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99974 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46737 * 90.00547 * 21 19 17 23 23 H 1.48500 * 109.46711 * 210.00077 * 21 19 17 24 24 H 1.48494 * 109.46996 * 330.00227 * 21 19 17 25 25 C 1.46919 * 120.63188 * 179.97438 * 10 8 6 26 26 N 1.47023 * 107.26961 * 337.80379 * 6 5 3 27 27 C 1.34772 * 125.64668 * 178.89990 * 26 6 5 28 28 C 1.50696 * 120.00095 * 180.02562 * 27 26 6 29 29 O 1.21288 * 120.00273 * 0.02562 * 27 26 6 30 30 C 1.47425 * 108.70220 * 358.94463 * 26 6 5 31 31 H 1.09001 * 109.47472 * 300.00664 * 1 2 3 32 32 H 1.09007 * 109.46629 * 60.00283 * 1 2 3 33 33 H 1.09003 * 109.47446 * 180.02562 * 1 2 3 34 34 H 1.09000 * 110.72522 * 35.22927 * 5 3 2 35 35 H 1.09001 * 110.72220 * 271.95006 * 5 3 2 36 36 H 1.08998 * 109.58787 * 246.20220 * 11 10 8 37 37 H 1.09007 * 109.58600 * 6.48533 * 11 10 8 38 38 H 1.09002 * 109.49529 * 174.58688 * 12 11 10 39 39 H 1.09001 * 109.49774 * 294.68244 * 12 11 10 40 40 H 1.09007 * 109.45640 * 58.65727 * 13 12 11 41 41 H 1.09000 * 109.45893 * 178.62518 * 13 12 11 42 42 H 0.97005 * 120.00342 * 265.10679 * 16 14 13 43 43 H 0.96998 * 120.00214 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.58751 * 353.37646 * 25 10 8 45 45 H 1.08996 * 109.58750 * 113.65831 * 25 10 8 46 46 H 1.09000 * 109.47206 * 0.02562 * 28 27 26 47 47 H 1.08999 * 109.47397 * 120.00464 * 28 27 26 48 48 H 1.09001 * 109.47714 * 240.00287 * 28 27 26 49 49 H 1.08999 * 110.36785 * 142.96536 * 30 26 6 50 50 H 1.08998 * 110.36158 * 265.28686 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3830 2.0101 0.5459 5 6 3.4484 1.2747 0.5814 6 6 4.1210 2.4873 -0.0960 7 1 5.1536 2.2474 -0.3499 8 6 4.0838 3.6767 0.8286 9 8 3.2354 4.5312 0.6837 10 7 4.9934 3.7910 1.8166 11 6 6.0269 2.7638 2.0051 12 6 7.4003 3.4424 2.0156 13 6 7.4111 4.5468 3.0749 14 6 6.3547 5.6000 2.7317 15 1 6.5648 6.0154 1.7461 16 7 6.3848 6.6708 3.7310 17 6 7.2680 7.7085 3.5961 18 1 7.9427 7.7373 2.7533 19 6 7.2969 8.7230 4.5432 20 7 8.1462 9.7201 4.4138 21 14 6.1304 8.6728 6.0014 22 1 6.7732 7.9445 7.1246 23 1 5.8117 10.0590 6.4281 24 1 4.8792 7.9751 5.6105 25 6 4.9702 4.9450 2.7256 26 7 3.3607 2.7811 -1.3196 27 6 3.6178 3.7840 -2.1824 28 6 2.7520 3.9695 -3.4018 29 8 4.5460 4.5373 -1.9774 30 6 2.2697 1.7976 -1.4457 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 3.9556 0.3496 0.3074 35 1 3.4295 1.3992 1.6641 36 1 5.8648 2.2522 2.9538 37 1 5.9791 2.0433 1.1886 38 1 8.1683 2.7054 2.2504 39 1 7.5991 3.8762 1.0356 40 1 7.1878 4.1159 4.0510 41 1 8.3951 5.0150 3.1013 42 1 5.7790 6.6448 4.4882 43 1 8.1662 10.4291 5.0754 44 1 4.2270 5.6651 2.3832 45 1 4.7194 4.6120 3.7327 46 1 1.9757 3.2044 -3.4160 47 1 2.2892 4.9558 -3.3722 48 1 3.3647 3.8825 -4.2991 49 1 1.3761 2.2722 -1.8510 50 1 2.5796 0.9667 -2.0795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999797456.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:02 Heat of formation + Delta-G solvation = -111.467325 kcal Electronic energy + Delta-G solvation = -31342.021350 eV Core-core repulsion = 27176.111073 eV Total energy + Delta-G solvation = -4165.910277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.11218 -40.51031 -39.36370 -38.68812 -37.16496 -36.38763 -34.08743 -33.05463 -32.91419 -31.09474 -30.40894 -29.51426 -27.38680 -26.61439 -25.72435 -24.50519 -23.42948 -22.77239 -21.79243 -21.02900 -19.90672 -19.59287 -18.70606 -18.27277 -17.81166 -16.97937 -16.82777 -16.49539 -16.43113 -16.13130 -15.90982 -15.65019 -15.49149 -15.35692 -15.20499 -14.75718 -14.63318 -14.27765 -14.18608 -14.04822 -13.93646 -13.85858 -13.61733 -13.26368 -13.07210 -13.00962 -12.97333 -12.61953 -12.52229 -12.35116 -12.18360 -12.04532 -11.89667 -11.84723 -11.82160 -11.73253 -11.16959 -11.02760 -10.99669 -10.61373 -9.80875 -9.75970 -9.36821 -8.07461 -5.43038 1.30199 1.33888 1.38826 1.45823 1.55031 1.79353 1.98732 2.44233 2.71078 3.22645 3.25091 3.37684 3.38038 3.50271 3.77476 3.91353 3.93678 3.98316 4.02737 4.05993 4.15632 4.23991 4.28162 4.37154 4.47777 4.53632 4.55167 4.58736 4.61810 4.67412 4.72647 4.75062 4.78476 4.80309 4.87887 4.92727 4.95469 4.98750 5.06221 5.12208 5.35574 5.40618 5.47965 5.70337 6.13953 6.15423 6.29807 6.38410 6.99503 7.02152 7.11219 7.73461 7.95519 9.14255 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.002932 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.561048 B = 9546.061534 C = 9972.122881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.378 6.378 3 C 0.079 3.921 4 H 0.070 0.930 5 C -0.106 4.106 6 C 0.120 3.880 7 H 0.115 0.885 8 C 0.502 3.498 9 O -0.579 6.579 10 N -0.603 5.603 11 C 0.103 3.897 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.169 3.831 15 H 0.015 0.985 16 N -0.747 5.747 17 C -0.234 4.234 18 H 0.048 0.952 19 C -0.064 4.064 20 N -0.984 5.984 21 Si 0.961 3.039 22 H -0.269 1.269 23 H -0.295 1.295 24 H -0.255 1.255 25 C 0.118 3.882 26 N -0.603 5.603 27 C 0.518 3.482 28 C -0.159 4.159 29 O -0.593 6.593 30 C 0.080 3.920 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.368 0.632 43 H 0.259 0.741 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.110 0.890 49 H 0.098 0.902 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.799 -30.480 -11.782 36.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.296 6.296 3 C 0.020 3.980 4 H 0.088 0.912 5 C -0.144 4.144 6 C 0.012 3.988 7 H 0.132 0.868 8 C 0.290 3.710 9 O -0.458 6.458 10 N -0.336 5.336 11 C -0.018 4.018 12 C -0.166 4.166 13 C -0.167 4.167 14 C 0.061 3.939 15 H 0.034 0.966 16 N -0.391 5.391 17 C -0.365 4.365 18 H 0.066 0.934 19 C -0.255 4.255 20 N -0.634 5.634 21 Si 0.787 3.213 22 H -0.195 1.195 23 H -0.222 1.222 24 H -0.179 1.179 25 C -0.006 4.006 26 N -0.338 5.338 27 C 0.310 3.690 28 C -0.218 4.218 29 O -0.474 6.474 30 C -0.042 4.042 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.201 0.799 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.128 0.872 47 H 0.110 0.890 48 H 0.129 0.871 49 H 0.116 0.884 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.496 -29.625 -11.930 35.946 hybrid contribution -0.224 1.721 0.917 1.963 sum -16.720 -27.904 -11.013 34.344 Atomic orbital electron populations 1.23051 0.79239 1.04281 1.00949 1.87892 1.21478 1.25365 1.94817 1.23105 0.94715 0.85515 0.94709 0.91216 1.22718 0.94292 0.96245 1.01146 1.21705 0.99628 0.92423 0.85035 0.86778 1.21497 0.80604 0.88155 0.80749 1.90651 1.39241 1.43885 1.71991 1.48151 1.30998 1.23456 1.30993 1.22206 0.85389 0.89247 1.04991 1.21906 0.98180 0.98205 0.98309 1.22039 0.98795 0.96081 0.99779 1.20575 0.94181 0.88188 0.91000 0.96646 1.42587 1.43934 1.24754 1.27841 1.18921 1.11428 0.99393 1.06734 0.93439 1.25564 1.01223 0.96368 1.02346 1.69896 1.41377 1.13608 1.38515 0.85324 0.79495 0.76958 0.79476 1.19460 1.22163 1.17935 1.21578 0.96878 0.88170 0.93997 1.48339 1.32493 1.30867 1.22120 1.21448 0.84797 0.77767 0.85028 1.21906 1.00356 1.05566 0.93993 1.90767 1.34231 1.45241 1.77114 1.23057 0.90195 0.92145 0.98826 0.93851 0.92587 0.87740 0.85076 0.88409 0.87752 0.86926 0.87240 0.93659 0.90607 0.94100 0.79866 0.93175 0.92464 0.89444 0.87200 0.88962 0.87146 0.88427 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.89 113.37 1.23 1.37 16 2 O -0.38 -4.17 10.51 -148.98 -1.57 -5.74 16 3 C 0.08 0.99 3.49 31.98 0.11 1.10 16 4 H 0.07 1.10 7.90 -2.39 -0.02 1.08 16 5 C -0.11 -1.29 5.81 31.78 0.18 -1.11 16 6 C 0.12 2.47 2.37 44.60 0.11 2.57 16 7 H 0.11 2.12 6.59 -2.39 -0.02 2.10 16 8 C 0.50 15.51 6.05 87.66 0.53 16.04 16 9 O -0.58 -23.47 15.38 -3.02 -0.05 -23.52 16 10 N -0.60 -17.38 2.97 -818.97 -2.44 -19.81 16 11 C 0.10 1.94 6.19 86.36 0.53 2.47 16 12 C -0.13 -3.06 6.08 30.67 0.19 -2.87 16 13 C -0.13 -4.29 5.47 30.63 0.17 -4.12 16 14 C 0.17 7.15 2.92 45.07 0.13 7.28 16 15 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 16 N -0.75 -37.35 4.93 -322.58 -1.59 -38.94 16 17 C -0.23 -14.22 10.41 84.03 0.88 -13.34 16 18 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 19 C -0.06 -3.92 5.50 84.86 0.47 -3.45 16 20 N -0.98 -65.63 13.97 21.65 0.30 -65.33 16 21 Si 0.96 47.13 27.74 68.60 1.90 49.03 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 24 H -0.25 -11.42 6.52 99.48 0.65 -10.77 16 25 C 0.12 4.22 5.90 86.35 0.51 4.73 16 26 N -0.60 -12.61 2.79 -792.18 -2.21 -14.82 16 27 C 0.52 13.87 7.30 87.66 0.64 14.51 16 28 C -0.16 -2.47 10.19 71.23 0.73 -1.74 16 29 O -0.59 -23.34 16.72 -3.05 -0.05 -23.39 16 30 C 0.08 0.93 6.12 86.85 0.53 1.46 16 31 H 0.04 0.32 8.11 -2.39 -0.02 0.30 16 32 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 1.17 7.82 -2.39 -0.02 1.15 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.41 5.35 -2.38 -0.01 1.40 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.37 17.24 5.66 -92.70 -0.52 16.72 16 43 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 44 H 0.06 2.45 7.01 -2.39 -0.02 2.43 16 45 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.11 0.88 6.08 -2.39 -0.01 0.86 16 47 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.10 0.84 6.94 -2.39 -0.02 0.82 16 50 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -93.11 394.08 1.60 -91.51 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.36 Total: 26.11 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 6.94 Total: 24.89 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -5.94 Total: -138.90 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -1.66 Total: -52.64 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.03 kcal Total: -93.11 1.60 -91.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999797456.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.957 kcal (2) G-P(sol) polarization free energy of solvation -93.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds