Wall clock time and date at job start Sat Apr 11 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21283 * 119.99734 * 2 1 4 4 N 1.34781 * 120.00329 * 179.97438 * 2 1 3 5 5 C 1.47151 * 120.97871 * 3.58015 * 4 2 1 6 6 C 1.53297 * 108.38290 * 129.48562 * 5 4 2 7 7 O 1.42956 * 109.22205 * 52.30048 * 6 5 4 8 8 C 1.42960 * 114.16785 * 297.41859 * 7 6 5 9 9 C 1.47152 * 120.98235 * 183.60058 * 4 2 1 10 10 H 1.08995 * 109.67734 * 110.75578 * 9 4 2 11 11 C 1.50695 * 109.68095 * 350.23717 * 9 4 2 12 12 O 1.21277 * 120.00313 * 295.66329 * 11 9 4 13 13 N 1.34780 * 119.99725 * 115.66981 * 11 9 4 14 14 C 1.46504 * 120.00104 * 179.97438 * 13 11 9 15 15 C 1.52993 * 109.47451 * 179.97438 * 14 13 11 16 16 C 1.53045 * 109.46119 * 295.06987 * 15 14 13 17 17 C 1.53190 * 109.31262 * 178.61506 * 16 15 14 18 18 N 1.46927 * 108.77889 * 54.63071 * 17 16 15 19 19 C 1.36937 * 120.62908 * 126.36932 * 18 17 16 20 20 H 1.07991 * 119.99845 * 215.43573 * 19 18 17 21 21 C 1.38810 * 120.00111 * 35.43393 * 19 18 17 22 22 N 1.31622 * 120.00034 * 355.82547 * 21 19 18 23 23 Si 1.86797 * 120.00299 * 175.82496 * 21 19 18 24 24 H 1.48506 * 109.46943 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47437 * 119.99894 * 23 21 19 26 26 H 1.48497 * 109.47168 * 240.00126 * 23 21 19 27 27 C 1.46923 * 118.73617 * 306.39381 * 18 17 16 28 28 C 1.53039 * 109.46342 * 174.99972 * 15 14 13 29 29 H 1.09008 * 109.47488 * 239.99929 * 1 2 3 30 30 H 1.09001 * 109.47339 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47528 * 120.00090 * 1 2 3 32 32 H 1.08993 * 109.68196 * 249.20785 * 5 4 2 33 33 H 1.09000 * 109.68565 * 9.76022 * 5 4 2 34 34 H 1.09002 * 109.51033 * 172.22366 * 6 5 4 35 35 H 1.09001 * 109.51184 * 292.37735 * 6 5 4 36 36 H 1.09001 * 109.51579 * 302.65520 * 8 7 6 37 37 H 1.09006 * 109.51066 * 182.50730 * 8 7 6 38 38 H 0.97001 * 120.00121 * 359.97438 * 13 11 9 39 39 H 1.09005 * 109.46930 * 299.99878 * 14 13 11 40 40 H 1.09008 * 109.46941 * 59.99434 * 14 13 11 41 41 H 1.09002 * 109.45796 * 55.02469 * 15 14 13 42 42 H 1.08997 * 109.49218 * 298.56394 * 16 15 14 43 43 H 1.08998 * 109.49538 * 58.65758 * 16 15 14 44 44 H 1.09005 * 109.58366 * 294.84134 * 17 16 15 45 45 H 1.08999 * 109.58620 * 174.42131 * 17 16 15 46 46 H 0.96999 * 120.00613 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.59069 * 293.81816 * 27 18 17 48 48 H 1.09005 * 109.58227 * 173.39549 * 27 18 17 49 49 H 1.08998 * 109.49692 * 301.33936 * 28 15 14 50 50 H 1.09001 * 109.49550 * 61.39884 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4692 -2.4528 -0.0777 6 6 2.1042 -3.2898 -1.1940 7 8 3.5169 -3.3577 -0.9858 8 6 4.1787 -2.0919 -1.0442 9 6 3.6500 -1.1936 0.0798 10 1 3.9584 -1.5933 1.0457 11 6 4.1925 0.2023 -0.0885 12 8 4.0352 0.7918 -1.1366 13 7 4.8526 0.7955 0.9259 14 6 5.3805 2.1523 0.7622 15 6 6.0794 2.5867 2.0520 16 6 5.0510 2.6841 3.1813 17 6 5.7597 3.0856 4.4787 18 7 6.5148 4.3235 4.2416 19 6 6.3352 5.4156 5.0481 20 1 6.3848 6.4098 4.6296 21 6 6.0892 5.2445 6.4035 22 7 5.9470 4.0334 6.8988 23 14 5.9602 6.7331 7.5245 24 1 6.1572 7.9710 6.7282 25 1 4.6178 6.7603 8.1587 26 1 7.0037 6.6514 8.5779 27 6 7.4657 4.3676 3.1225 28 6 6.7379 3.9518 1.8403 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 1.5580 -2.9799 0.8721 33 1 0.4175 -2.2771 -0.3036 34 1 1.6850 -4.2958 -1.1781 35 1 1.9004 -2.8248 -2.1586 36 1 3.9824 -1.6225 -2.0082 37 1 5.2521 -2.2362 -0.9206 38 1 4.9782 0.3241 1.7643 39 1 6.0946 2.1674 -0.0612 40 1 4.5608 2.8373 0.5450 41 1 6.8410 1.8533 2.3171 42 1 4.3028 3.4352 2.9280 43 1 4.5658 1.7174 3.3158 44 1 6.4436 2.2928 4.7818 45 1 5.0206 3.2527 5.2622 46 1 5.7755 3.9137 7.8460 47 1 8.2887 3.6794 3.3150 48 1 7.8522 5.3807 3.0112 49 1 7.4532 3.8874 1.0205 50 1 5.9737 4.6908 1.5991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002138312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:18 Heat of formation + Delta-G solvation = -84.596037 kcal Electronic energy + Delta-G solvation = -31054.967196 eV Core-core repulsion = 26890.222145 eV Total energy + Delta-G solvation = -4164.745051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.20084 -38.92047 -38.55602 -37.57598 -35.13581 -34.76400 -32.89180 -32.28608 -30.51204 -30.19587 -29.73490 -28.00175 -26.84669 -25.04161 -23.77582 -22.61584 -22.13360 -21.20147 -20.67115 -19.46904 -18.94388 -17.75447 -17.22269 -16.85300 -16.67721 -16.29098 -15.90695 -15.46725 -15.19815 -14.93507 -14.76601 -14.65886 -13.99600 -13.95601 -13.67312 -13.47595 -13.39577 -13.24416 -12.91200 -12.68837 -12.55696 -12.41669 -12.23105 -12.18144 -11.85829 -11.68477 -11.44566 -11.34105 -10.86303 -10.73926 -10.68970 -10.47139 -10.15618 -10.09273 -9.85257 -9.82029 -9.65646 -9.41469 -9.36297 -9.00456 -8.70477 -8.41781 -6.50318 -5.75094 -3.27838 2.19323 2.39151 3.07404 3.13122 3.38081 3.45494 3.47733 3.49633 4.16555 4.28169 4.50173 4.50732 4.57221 4.64743 4.71340 4.79340 4.89896 4.98560 5.05874 5.17685 5.26086 5.27006 5.39071 5.40172 5.46576 5.50790 5.52794 5.68683 5.91453 6.02858 6.06291 6.20805 6.31908 6.39440 6.56429 6.57149 6.68043 6.72233 6.80633 6.87320 6.93838 6.95888 7.06977 7.50443 7.70097 7.81783 7.85383 7.89197 8.48362 8.57270 9.28878 9.88244 10.48138 11.30609 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.002492 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.916427 B =11232.256339 C =11730.573149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.503 3.497 3 O -0.495 6.495 4 N -0.612 5.612 5 C 0.076 3.924 6 C 0.044 3.956 7 O -0.373 6.373 8 C 0.063 3.937 9 C 0.091 3.909 10 H 0.095 0.905 11 C 0.535 3.465 12 O -0.529 6.529 13 N -0.718 5.718 14 C 0.132 3.868 15 C -0.090 4.090 16 C -0.133 4.133 17 C 0.167 3.833 18 N -0.595 5.595 19 C -0.250 4.250 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.905 5.905 23 Si 0.902 3.098 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.147 3.853 28 C -0.124 4.124 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.396 0.604 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.012 0.988 45 H 0.099 0.901 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 -17.979 -15.319 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.292 3.708 3 O -0.368 6.368 4 N -0.351 5.351 5 C -0.047 4.047 6 C -0.034 4.034 7 O -0.291 6.291 8 C -0.015 4.015 9 C -0.016 4.016 10 H 0.113 0.887 11 C 0.320 3.680 12 O -0.405 6.405 13 N -0.370 5.370 14 C 0.009 3.991 15 C -0.109 4.109 16 C -0.172 4.172 17 C 0.041 3.959 18 N -0.318 5.318 19 C -0.380 4.380 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.550 5.550 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.020 3.980 28 C -0.164 4.164 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.231 0.769 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.030 0.970 45 H 0.117 0.883 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.452 -17.120 -15.868 25.183 hybrid contribution -0.292 0.550 1.122 1.283 sum -9.744 -16.570 -14.746 24.227 Atomic orbital electron populations 1.21908 0.91098 1.05841 1.03893 1.20999 0.90897 0.82979 0.75952 1.90865 1.68590 1.30400 1.46984 1.48096 1.04799 1.06603 1.75622 1.22493 0.97421 0.84121 1.00685 1.23036 0.81845 1.01273 0.97242 1.87997 1.19634 1.28595 1.92893 1.22846 0.97728 0.83579 0.97322 1.21898 0.81862 0.96227 1.01635 0.88692 1.19438 0.77742 0.86242 0.84611 1.90673 1.57071 1.64421 1.28369 1.45867 1.57704 1.17476 1.15969 1.21463 0.97732 0.82022 0.97892 1.21305 0.97870 0.97884 0.93836 1.22260 0.97608 0.99454 0.97920 1.20959 0.94987 0.86947 0.92965 1.44008 1.43385 1.12110 1.32273 1.19214 1.44088 0.86500 0.88183 0.91891 1.25321 1.00565 0.96332 0.96947 1.69906 1.52910 1.19729 1.12465 0.86211 0.77208 0.82500 0.80868 1.20237 1.21718 1.21536 1.20902 0.91362 0.98492 0.87217 1.21981 0.99589 0.95786 0.99073 0.89246 0.88673 0.89533 0.90009 0.88234 0.87243 0.92287 0.91070 0.87111 0.76946 0.92435 0.91575 0.91580 0.92737 0.93963 0.96958 0.88327 0.93677 0.96546 0.92819 0.93093 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 8.74 36.00 0.31 -0.92 16 2 C 0.50 6.14 7.66 -10.99 -0.08 6.05 16 3 O -0.50 -8.68 12.87 -18.90 -0.24 -8.92 16 4 N -0.61 -6.09 3.02 -166.07 -0.50 -6.59 16 5 C 0.08 0.42 6.53 -3.53 -0.02 0.40 16 6 C 0.04 0.25 6.98 37.31 0.26 0.51 16 7 O -0.37 -3.27 10.74 -35.23 -0.38 -3.65 16 8 C 0.06 0.60 6.23 37.31 0.23 0.84 16 9 C 0.09 1.00 3.51 -68.58 -0.24 0.76 16 10 H 0.10 0.88 7.93 -51.93 -0.41 0.47 16 11 C 0.53 7.96 4.34 -10.99 -0.05 7.92 16 12 O -0.53 -9.95 14.72 -18.90 -0.28 -10.22 16 13 N -0.72 -10.41 5.27 -60.29 -0.32 -10.73 16 14 C 0.13 2.15 5.06 -4.04 -0.02 2.13 16 15 C -0.09 -1.54 2.19 -90.58 -0.20 -1.74 16 16 C -0.13 -2.62 5.25 -26.61 -0.14 -2.76 16 17 C 0.17 4.04 5.26 -3.71 -0.02 4.02 16 18 N -0.59 -15.20 3.00 -172.33 -0.52 -15.72 16 19 C -0.25 -6.98 9.55 -15.06 -0.14 -7.13 16 20 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 21 C 0.01 0.18 5.32 -17.43 -0.09 0.09 16 22 N -0.91 -26.27 10.62 55.49 0.59 -25.69 16 23 Si 0.90 21.91 29.56 -169.99 -5.02 16.88 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 28 C -0.12 -2.25 5.36 -26.61 -0.14 -2.39 16 29 H 0.09 0.46 8.12 -51.92 -0.42 0.04 16 30 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 31 H 0.09 0.42 7.51 -51.93 -0.39 0.03 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.30 6.07 -51.93 -0.32 -0.01 16 34 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.78 7.82 -51.93 -0.41 0.38 16 37 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 5.01 7.50 -40.82 -0.31 4.70 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.04 0.75 7.15 -51.93 -0.37 0.38 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 2.71 5.92 -51.93 -0.31 2.40 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -36.31 387.55 -9.58 -45.90 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.38 Total: 2.00 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.37 Total: 10.90 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.75 Total: -58.72 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.90 Total: -22.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.31 -9.58 -45.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002138312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.701 kcal (2) G-P(sol) polarization free energy of solvation -36.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds