Wall clock time and date at job start Sat Apr 11 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21283 * 119.99734 * 2 1 4 4 N 1.34781 * 120.00329 * 179.97438 * 2 1 3 5 5 C 1.47151 * 120.97871 * 3.58015 * 4 2 1 6 6 C 1.53297 * 108.38290 * 129.48562 * 5 4 2 7 7 O 1.42956 * 109.22205 * 52.30048 * 6 5 4 8 8 C 1.42960 * 114.16785 * 297.41859 * 7 6 5 9 9 C 1.47152 * 120.98235 * 183.60058 * 4 2 1 10 10 H 1.08995 * 109.67734 * 110.75578 * 9 4 2 11 11 C 1.50695 * 109.68095 * 350.23717 * 9 4 2 12 12 O 1.21277 * 120.00313 * 295.66329 * 11 9 4 13 13 N 1.34780 * 119.99725 * 115.66981 * 11 9 4 14 14 C 1.46504 * 120.00104 * 179.97438 * 13 11 9 15 15 C 1.52993 * 109.47451 * 179.97438 * 14 13 11 16 16 C 1.53045 * 109.46119 * 295.06987 * 15 14 13 17 17 C 1.53190 * 109.31262 * 178.61506 * 16 15 14 18 18 N 1.46927 * 108.77889 * 54.63071 * 17 16 15 19 19 C 1.36937 * 120.62908 * 126.36932 * 18 17 16 20 20 H 1.07991 * 119.99845 * 215.43573 * 19 18 17 21 21 C 1.38810 * 120.00111 * 35.43393 * 19 18 17 22 22 N 1.31622 * 120.00034 * 355.82547 * 21 19 18 23 23 Si 1.86797 * 120.00299 * 175.82496 * 21 19 18 24 24 H 1.48506 * 109.46943 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47437 * 119.99894 * 23 21 19 26 26 H 1.48497 * 109.47168 * 240.00126 * 23 21 19 27 27 C 1.46923 * 118.73617 * 306.39381 * 18 17 16 28 28 C 1.53039 * 109.46342 * 174.99972 * 15 14 13 29 29 H 1.09008 * 109.47488 * 239.99929 * 1 2 3 30 30 H 1.09001 * 109.47339 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47528 * 120.00090 * 1 2 3 32 32 H 1.08993 * 109.68196 * 249.20785 * 5 4 2 33 33 H 1.09000 * 109.68565 * 9.76022 * 5 4 2 34 34 H 1.09002 * 109.51033 * 172.22366 * 6 5 4 35 35 H 1.09001 * 109.51184 * 292.37735 * 6 5 4 36 36 H 1.09001 * 109.51579 * 302.65520 * 8 7 6 37 37 H 1.09006 * 109.51066 * 182.50730 * 8 7 6 38 38 H 0.97001 * 120.00121 * 359.97438 * 13 11 9 39 39 H 1.09005 * 109.46930 * 299.99878 * 14 13 11 40 40 H 1.09008 * 109.46941 * 59.99434 * 14 13 11 41 41 H 1.09002 * 109.45796 * 55.02469 * 15 14 13 42 42 H 1.08997 * 109.49218 * 298.56394 * 16 15 14 43 43 H 1.08998 * 109.49538 * 58.65758 * 16 15 14 44 44 H 1.09005 * 109.58366 * 294.84134 * 17 16 15 45 45 H 1.08999 * 109.58620 * 174.42131 * 17 16 15 46 46 H 0.96999 * 120.00613 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.59069 * 293.81816 * 27 18 17 48 48 H 1.09005 * 109.58227 * 173.39549 * 27 18 17 49 49 H 1.08998 * 109.49692 * 301.33936 * 28 15 14 50 50 H 1.09001 * 109.49550 * 61.39884 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4692 -2.4528 -0.0777 6 6 2.1042 -3.2898 -1.1940 7 8 3.5169 -3.3577 -0.9858 8 6 4.1787 -2.0919 -1.0442 9 6 3.6500 -1.1936 0.0798 10 1 3.9584 -1.5933 1.0457 11 6 4.1925 0.2023 -0.0885 12 8 4.0352 0.7918 -1.1366 13 7 4.8526 0.7955 0.9259 14 6 5.3805 2.1523 0.7622 15 6 6.0794 2.5867 2.0520 16 6 5.0510 2.6841 3.1813 17 6 5.7597 3.0856 4.4787 18 7 6.5148 4.3235 4.2416 19 6 6.3352 5.4156 5.0481 20 1 6.3848 6.4098 4.6296 21 6 6.0892 5.2445 6.4035 22 7 5.9470 4.0334 6.8988 23 14 5.9602 6.7331 7.5245 24 1 6.1572 7.9710 6.7282 25 1 4.6178 6.7603 8.1587 26 1 7.0037 6.6514 8.5779 27 6 7.4657 4.3676 3.1225 28 6 6.7379 3.9518 1.8403 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 1.5580 -2.9799 0.8721 33 1 0.4175 -2.2771 -0.3036 34 1 1.6850 -4.2958 -1.1781 35 1 1.9004 -2.8248 -2.1586 36 1 3.9824 -1.6225 -2.0082 37 1 5.2521 -2.2362 -0.9206 38 1 4.9782 0.3241 1.7643 39 1 6.0946 2.1674 -0.0612 40 1 4.5608 2.8373 0.5450 41 1 6.8410 1.8533 2.3171 42 1 4.3028 3.4352 2.9280 43 1 4.5658 1.7174 3.3158 44 1 6.4436 2.2928 4.7818 45 1 5.0206 3.2527 5.2622 46 1 5.7755 3.9137 7.8460 47 1 8.2887 3.6794 3.3150 48 1 7.8522 5.3807 3.0112 49 1 7.4532 3.8874 1.0205 50 1 5.9737 4.6908 1.5991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002138312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:16 Heat of formation + Delta-G solvation = -110.419938 kcal Electronic energy + Delta-G solvation = -31056.087004 eV Core-core repulsion = 26890.222145 eV Total energy + Delta-G solvation = -4165.864859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.08560 -40.11480 -39.35506 -39.11918 -36.34399 -35.92485 -34.52256 -33.21071 -32.22851 -31.50906 -30.82380 -28.85009 -28.27609 -26.25599 -25.18233 -23.83261 -23.30415 -22.70279 -21.89057 -20.83005 -20.16858 -18.84329 -18.58149 -17.96974 -17.71151 -17.06771 -16.86632 -16.71125 -16.37016 -16.04845 -15.91148 -15.76871 -15.52838 -15.26969 -14.95387 -14.77228 -14.68891 -14.53501 -14.18267 -13.89762 -13.79146 -13.35685 -13.25966 -13.19787 -13.12855 -13.02893 -12.77406 -12.63258 -12.46605 -12.31047 -12.03716 -11.94104 -11.86688 -11.61170 -11.39820 -11.26262 -11.14505 -10.84071 -10.60970 -10.53681 -10.02377 -9.70893 -8.55028 -7.86568 -5.42885 1.34912 1.44563 1.45822 1.53683 1.56442 2.10551 2.14454 2.48781 2.81623 3.27102 3.45237 3.62260 3.72382 3.80506 3.81347 3.87636 3.95247 3.99631 4.05615 4.17682 4.19754 4.38257 4.45023 4.51759 4.54453 4.56983 4.59146 4.67779 4.73819 4.76861 4.79389 4.89051 4.93090 5.01775 5.02604 5.15757 5.21675 5.24405 5.28431 5.41452 5.49585 5.60563 5.66564 5.84394 5.97188 6.21611 6.46452 6.57125 7.03971 7.18224 7.37630 7.86653 8.40106 9.16678 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.002492 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.916427 B =11232.256339 C =11730.573149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.489 3.511 3 O -0.561 6.561 4 N -0.611 5.611 5 C 0.072 3.928 6 C 0.037 3.963 7 O -0.381 6.381 8 C 0.072 3.928 9 C 0.090 3.910 10 H 0.116 0.884 11 C 0.533 3.467 12 O -0.573 6.573 13 N -0.716 5.716 14 C 0.148 3.852 15 C -0.077 4.077 16 C -0.117 4.117 17 C 0.175 3.825 18 N -0.615 5.615 19 C -0.266 4.266 20 H 0.061 0.939 21 C -0.046 4.046 22 N -0.932 5.932 23 Si 0.968 3.032 24 H -0.269 1.269 25 H -0.290 1.290 26 H -0.288 1.288 27 C 0.143 3.857 28 C -0.116 4.116 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.123 0.877 38 H 0.406 0.594 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.081 0.919 42 H 0.031 0.969 43 H 0.061 0.939 44 H 0.000 1.000 45 H 0.062 0.938 46 H 0.250 0.750 47 H 0.022 0.978 48 H 0.053 0.947 49 H 0.084 0.916 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 -20.043 -15.908 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.279 3.721 3 O -0.439 6.439 4 N -0.348 5.348 5 C -0.049 4.049 6 C -0.040 4.040 7 O -0.299 6.299 8 C -0.006 4.006 9 C -0.017 4.017 10 H 0.133 0.867 11 C 0.321 3.679 12 O -0.452 6.452 13 N -0.368 5.368 14 C 0.024 3.976 15 C -0.096 4.096 16 C -0.156 4.156 17 C 0.049 3.951 18 N -0.339 5.339 19 C -0.396 4.396 20 H 0.078 0.922 21 C -0.241 4.241 22 N -0.577 5.577 23 Si 0.796 3.204 24 H -0.193 1.193 25 H -0.217 1.217 26 H -0.214 1.214 27 C 0.018 3.982 28 C -0.156 4.156 29 H 0.136 0.864 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.141 0.859 38 H 0.242 0.758 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.018 0.982 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.040 0.960 48 H 0.072 0.928 49 H 0.103 0.897 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.230 -19.252 -16.466 27.320 hybrid contribution -0.089 1.128 1.270 1.701 sum -10.319 -18.123 -15.196 25.804 Atomic orbital electron populations 1.21928 0.87425 1.05900 1.06590 1.21931 0.92827 0.82578 0.74722 1.90834 1.70044 1.32738 1.50269 1.48306 1.04436 1.07776 1.74304 1.22856 0.98596 0.81942 1.01513 1.23326 0.80384 1.03178 0.97099 1.87996 1.21373 1.27707 1.92840 1.22717 0.98594 0.83648 0.95662 1.21928 0.82881 0.93642 1.03230 0.86657 1.20060 0.76683 0.87498 0.83675 1.90640 1.58446 1.65967 1.30111 1.45811 1.57665 1.16775 1.16588 1.21118 0.96639 0.82571 0.97283 1.21161 0.97297 0.97954 0.93145 1.22015 0.97373 0.99547 0.96665 1.20715 0.93946 0.86359 0.94033 1.44282 1.44709 1.11770 1.33180 1.19488 1.43960 0.87234 0.88939 0.92181 1.26050 1.00769 0.98993 0.98287 1.70085 1.53793 1.21445 1.12417 0.85193 0.76861 0.79577 0.78766 1.19310 1.21690 1.21430 1.21046 0.91120 0.98845 0.87204 1.21872 0.99695 0.95692 0.98300 0.86438 0.90091 0.86553 0.88396 0.85154 0.84018 0.92704 0.93085 0.85926 0.75779 0.91625 0.94604 0.90072 0.94975 0.92025 0.98174 0.91966 0.94004 0.96011 0.92844 0.89724 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.74 71.23 0.62 -1.37 16 2 C 0.49 11.54 7.66 87.65 0.67 12.21 16 3 O -0.56 -20.22 12.87 20.34 0.26 -19.96 16 4 N -0.61 -11.02 3.02 -797.70 -2.41 -13.43 16 5 C 0.07 0.54 6.53 86.35 0.56 1.11 16 6 C 0.04 0.31 6.98 72.08 0.50 0.81 16 7 O -0.38 -5.73 10.74 -148.98 -1.60 -7.33 16 8 C 0.07 1.29 6.23 72.08 0.45 1.74 16 9 C 0.09 1.86 3.51 44.22 0.16 2.02 16 10 H 0.12 1.89 7.93 -2.39 -0.02 1.87 16 11 C 0.53 15.88 4.34 87.66 0.38 16.26 16 12 O -0.57 -22.11 14.72 20.36 0.30 -21.81 16 13 N -0.72 -20.44 5.27 -463.05 -2.44 -22.88 16 14 C 0.15 4.78 5.06 86.38 0.44 5.22 16 15 C -0.08 -2.57 2.19 -10.77 -0.02 -2.60 16 16 C -0.12 -4.65 5.25 30.67 0.16 -4.49 16 17 C 0.17 8.68 5.26 86.36 0.45 9.14 16 18 N -0.62 -32.01 3.00 -699.12 -2.10 -34.10 16 19 C -0.27 -15.12 9.55 84.03 0.80 -14.32 16 20 H 0.06 3.37 7.83 -2.92 -0.02 3.35 16 21 C -0.05 -2.60 5.32 84.86 0.45 -2.14 16 22 N -0.93 -55.33 10.62 21.65 0.23 -55.10 16 23 Si 0.97 45.68 29.56 68.60 2.03 47.70 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 27 C 0.14 6.09 6.52 86.36 0.56 6.65 16 28 C -0.12 -4.09 5.36 30.67 0.16 -3.93 16 29 H 0.12 0.80 8.12 -2.38 -0.02 0.78 16 30 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 31 H 0.12 0.74 7.51 -2.39 -0.02 0.72 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.13 0.19 6.07 -2.39 -0.01 0.17 16 34 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 1.11 7.82 -2.39 -0.02 1.10 16 37 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.41 9.78 7.50 -92.71 -0.70 9.09 16 39 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 2.19 7.15 -2.39 -0.02 2.17 16 44 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 45 H 0.06 3.55 5.92 -2.39 -0.01 3.53 16 46 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 47 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.05 2.23 7.93 -2.38 -0.02 2.21 16 49 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 50 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -83.31 387.55 0.87 -82.44 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.24 Total: 18.17 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 6.36 Total: 26.30 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -6.72 Total: -125.51 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -1.04 Total: -49.11 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -83.31 0.87 -82.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002138312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.976 kcal (2) G-P(sol) polarization free energy of solvation -83.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds