Wall clock time and date at job start Sat Apr 11 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00295 * 2 1 4 4 H 1.09006 * 110.91762 * 26.09265 * 3 2 1 5 5 C 1.55154 * 111.01048 * 149.99903 * 3 2 1 6 6 C 1.54321 * 102.94574 * 153.57727 * 5 3 2 7 7 H 1.08998 * 109.88075 * 218.23413 * 6 5 3 8 8 C 1.50698 * 109.88391 * 97.22486 * 6 5 3 9 9 O 1.21279 * 120.00009 * 260.31797 * 8 6 5 10 10 N 1.34774 * 120.00089 * 80.04011 * 8 6 5 11 11 C 1.46500 * 120.00333 * 180.27917 * 10 8 6 12 12 C 1.53042 * 109.45598 * 275.02609 * 11 10 8 13 13 C 1.53193 * 109.31179 * 178.60191 * 12 11 10 14 14 N 1.46923 * 108.76755 * 54.65140 * 13 12 11 15 15 C 1.36935 * 120.62697 * 126.40732 * 14 13 12 16 16 H 1.07997 * 120.00497 * 332.60660 * 15 14 13 17 17 C 1.38820 * 119.99534 * 152.61100 * 15 14 13 18 18 N 1.31620 * 119.99435 * 159.34717 * 17 15 14 19 19 Si 1.86799 * 120.00211 * 339.34161 * 17 15 14 20 20 H 1.48492 * 109.46953 * 92.94477 * 19 17 15 21 21 H 1.48497 * 109.46990 * 212.94878 * 19 17 15 22 22 H 1.48505 * 109.46910 * 332.94530 * 19 17 15 23 23 C 1.46924 * 118.74160 * 306.38357 * 14 13 12 24 24 C 1.53043 * 109.46425 * 154.97310 * 11 10 8 25 25 N 1.47014 * 107.40208 * 337.72710 * 6 5 3 26 26 C 1.34781 * 125.65197 * 178.97885 * 25 6 5 27 27 C 1.50700 * 120.00291 * 180.02562 * 26 25 6 28 28 O 1.21275 * 119.99421 * 0.02562 * 26 25 6 29 29 C 1.47741 * 108.53599 * 359.07254 * 25 6 5 30 30 H 1.09005 * 109.47096 * 60.00453 * 1 2 3 31 31 H 1.08998 * 109.47272 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47308 * 300.00508 * 1 2 3 33 33 H 1.08999 * 110.71979 * 35.20593 * 5 3 2 34 34 H 1.09002 * 110.71666 * 271.94179 * 5 3 2 35 35 H 0.97006 * 120.00281 * 0.26832 * 10 8 6 36 36 H 1.09002 * 109.45962 * 34.99502 * 11 10 8 37 37 H 1.09001 * 109.49911 * 298.55877 * 12 11 10 38 38 H 1.08999 * 109.49959 * 58.66195 * 12 11 10 39 39 H 1.09006 * 109.59710 * 294.86461 * 13 12 11 40 40 H 1.08998 * 109.58871 * 174.43672 * 13 12 11 41 41 H 0.97007 * 119.99241 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.59084 * 293.82394 * 23 14 13 43 43 H 1.08998 * 109.70765 * 173.46229 * 23 14 13 44 44 H 1.09001 * 109.49483 * 301.33616 * 24 11 10 45 45 H 1.08989 * 109.49789 * 61.42912 * 24 11 10 46 46 H 1.09001 * 109.46570 * 60.00220 * 27 26 25 47 47 H 1.08997 * 109.47090 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.46994 * 300.00378 * 27 26 25 49 49 H 1.08997 * 110.28599 * 265.17245 * 29 25 6 50 50 H 1.08994 * 110.38326 * 142.88835 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0329 0.4478 5 6 3.3824 1.3034 0.7242 6 6 4.1232 2.4855 0.0645 7 1 5.1753 2.2346 -0.0705 8 6 3.9964 3.7151 0.9265 9 8 3.1745 4.5643 0.6542 10 7 4.7925 3.8684 2.0032 11 6 4.6650 5.0608 2.8446 12 6 5.4990 6.1971 2.2483 13 6 5.3356 7.4522 3.1113 14 7 5.6772 7.1183 4.5007 15 6 6.6096 7.8511 5.1853 16 1 7.3977 8.3586 4.6489 17 6 6.5419 7.9415 6.5689 18 7 7.6110 8.2770 7.2594 19 14 4.9336 7.5874 7.4505 20 1 4.8939 6.1585 7.8527 21 1 4.8322 8.4448 8.6586 22 1 3.7962 7.8773 6.5407 23 6 4.9989 5.9836 5.1418 24 6 5.1658 4.7450 4.2559 25 7 3.4943 2.7241 -1.2427 26 6 3.8435 3.6875 -2.1183 27 6 3.1087 3.8181 -3.4275 28 8 4.7490 4.4492 -1.8524 29 6 2.4155 1.7328 -1.4328 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.9118 0.3677 0.5446 34 1 3.2546 1.4763 1.7928 35 1 5.4498 3.1891 2.2211 36 1 3.6188 5.3633 2.8898 37 1 6.5488 5.9049 2.2260 38 1 5.1573 6.4058 1.2345 39 1 4.3031 7.7981 3.0618 40 1 6.0028 8.2342 2.7488 41 1 7.5638 8.3398 8.2263 42 1 3.9389 6.2096 5.2579 43 1 5.4417 5.7956 6.1199 44 1 4.5870 3.9200 4.6711 45 1 6.2187 4.4665 4.2144 46 1 2.0530 4.0080 -3.2342 47 1 3.5286 4.6460 -3.9988 48 1 3.2135 2.8944 -3.9966 49 1 2.7853 0.8749 -1.9942 50 1 1.5687 2.1873 -1.9469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003380241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:28 Heat of formation + Delta-G solvation = -79.617857 kcal Electronic energy + Delta-G solvation = -31047.013232 eV Core-core repulsion = 26882.484051 eV Total energy + Delta-G solvation = -4164.529180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.03511 -39.20805 -38.64209 -37.57005 -36.35747 -34.53637 -32.50220 -31.92022 -30.47433 -30.30378 -29.77304 -28.85618 -26.96082 -25.20419 -23.97479 -22.90572 -22.29248 -21.71532 -20.65628 -19.82427 -19.22205 -17.94301 -17.52018 -16.86790 -16.65633 -16.18662 -15.81068 -15.47820 -15.27425 -15.14934 -14.91497 -14.57870 -14.12817 -14.06511 -13.75604 -13.63895 -13.36258 -13.22003 -13.08038 -12.96737 -12.84568 -12.48526 -12.38796 -12.31908 -12.17583 -11.99278 -11.81758 -11.74001 -11.32249 -10.95634 -10.79198 -10.51698 -10.32397 -10.24593 -10.15504 -10.01392 -9.91839 -9.73348 -9.45062 -8.92935 -8.78052 -8.60491 -6.96715 -5.93184 -3.28628 2.28034 2.51914 2.72378 3.16793 3.31483 3.34983 3.49568 3.53249 3.89478 4.02807 4.47822 4.51196 4.54156 4.63448 4.70402 4.81674 4.89432 4.91896 4.97559 4.98781 5.06043 5.10839 5.20407 5.22481 5.27120 5.34962 5.36412 5.41950 5.44046 5.52333 5.69327 5.81687 5.86741 6.07240 6.13930 6.19072 6.36837 6.48068 6.59758 6.60926 6.68187 6.71017 6.78755 6.96927 7.15592 7.60854 7.95433 7.98367 8.31165 8.35202 8.96120 9.73819 10.11804 11.22924 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.002801 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.023481 B = 9992.670253 C =11092.395589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.075 3.925 4 H 0.086 0.914 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.102 0.898 8 C 0.509 3.491 9 O -0.528 6.528 10 N -0.721 5.721 11 C 0.154 3.846 12 C -0.140 4.140 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.258 4.258 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.882 3.118 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.130 3.870 24 C -0.140 4.140 25 N -0.603 5.603 26 C 0.532 3.468 27 C -0.166 4.166 28 O -0.527 6.527 29 C 0.086 3.914 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.397 0.603 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.825 -20.613 -18.974 31.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.016 3.984 4 H 0.104 0.896 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.120 0.880 8 C 0.292 3.708 9 O -0.403 6.403 10 N -0.372 5.372 11 C 0.050 3.950 12 C -0.181 4.181 13 C 0.025 3.975 14 N -0.330 5.330 15 C -0.386 4.386 16 H 0.104 0.896 17 C -0.177 4.177 18 N -0.552 5.552 19 Si 0.712 3.288 20 H -0.217 1.217 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.004 3.996 24 C -0.180 4.180 25 N -0.340 5.340 26 C 0.322 3.678 27 C -0.226 4.226 28 O -0.402 6.402 29 C -0.038 4.038 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.230 0.770 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.721 -19.589 -18.956 30.517 hybrid contribution -0.761 -0.346 0.741 1.117 sum -14.482 -19.934 -18.215 30.641 Atomic orbital electron populations 1.22879 0.80369 1.03136 1.00452 1.87907 1.20247 1.26125 1.94741 1.23246 0.95108 0.85556 0.94471 0.89607 1.22706 0.94715 0.97497 1.00674 1.21503 0.99693 0.93501 0.84198 0.88049 1.20604 0.81245 0.87719 0.81189 1.90684 1.36158 1.43314 1.70170 1.46224 1.38735 1.24201 1.28024 1.20975 1.00562 0.84199 0.89262 1.22362 0.99902 0.96600 0.99200 1.20899 0.98037 0.94193 0.84368 1.44410 1.47106 1.31114 1.10370 1.18950 1.03344 1.26595 0.89708 0.89623 1.25290 0.97026 0.99006 0.96359 1.69844 1.27239 1.51576 1.06546 0.86964 0.86401 0.76513 0.78899 1.21650 1.23131 1.19532 1.21289 0.95865 0.86421 0.96066 1.22350 1.01588 0.99675 0.94379 1.48178 1.35923 1.32983 1.16883 1.20481 0.83732 0.78368 0.85207 1.21878 1.01775 1.04723 0.94180 1.90777 1.30813 1.41106 1.77478 1.22777 0.90551 0.92271 0.98184 0.93736 0.89213 0.93570 0.88075 0.88766 0.76988 0.90124 0.91863 0.92096 0.95804 0.91592 0.92801 0.95590 0.90513 0.92308 0.91083 0.89393 0.88749 0.89506 0.89860 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.85 101.05 1.10 1.23 16 2 O -0.37 -2.71 10.51 -35.23 -0.37 -3.08 16 3 C 0.08 0.57 3.54 -24.58 -0.09 0.48 16 4 H 0.09 0.72 7.83 -51.93 -0.41 0.32 16 5 C -0.12 -0.89 6.22 -24.90 -0.15 -1.05 16 6 C 0.12 1.25 3.28 -68.11 -0.22 1.02 16 7 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 8 C 0.51 7.32 6.15 -10.99 -0.07 7.26 16 9 O -0.53 -9.69 15.61 5.56 0.09 -9.61 16 10 N -0.72 -9.86 5.08 -53.76 -0.27 -10.13 16 11 C 0.15 2.59 2.42 -67.89 -0.16 2.43 16 12 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 13 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 14 N -0.61 -14.77 2.77 -172.32 -0.48 -15.25 16 15 C -0.26 -7.32 10.04 -15.06 -0.15 -7.48 16 16 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 17 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 18 N -0.91 -28.09 13.97 55.49 0.78 -27.32 16 19 Si 0.88 22.53 24.35 -169.99 -4.14 18.40 16 20 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 21 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 22 H -0.27 -6.85 6.64 56.52 0.38 -6.47 16 23 C 0.13 2.84 4.20 -3.71 -0.02 2.82 16 24 C -0.14 -2.41 5.55 -26.61 -0.15 -2.55 16 25 N -0.60 -6.33 2.80 -164.08 -0.46 -6.79 16 26 C 0.53 6.68 7.30 -10.98 -0.08 6.60 16 27 C -0.17 -1.27 9.34 36.01 0.34 -0.94 16 28 O -0.53 -9.22 16.70 5.56 0.09 -9.13 16 29 C 0.09 0.60 6.44 -2.35 -0.02 0.58 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.22 8.12 -51.93 -0.42 -0.20 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.71 7.82 -51.93 -0.41 0.30 16 35 H 0.40 4.25 8.60 -40.82 -0.35 3.90 16 36 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 43 H 0.08 1.81 4.50 -51.93 -0.23 1.58 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.09 0.55 7.86 -51.93 -0.41 0.15 16 47 H 0.09 0.74 8.12 -51.93 -0.42 0.32 16 48 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.45 7.50 -51.93 -0.39 0.06 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -37.38 393.74 -7.24 -44.62 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.47 Total: 0.97 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 0.06 Total: 11.38 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.43 Total: -59.49 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.19 Total: -21.81 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.38 -7.24 -44.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003380241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.999 kcal (2) G-P(sol) polarization free energy of solvation -37.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds