Wall clock time and date at job start Sat Apr 11 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00521 * 2 1 4 4 N 1.34778 * 120.00181 * 180.02562 * 2 1 3 5 5 C 1.47159 * 120.97801 * 359.97391 * 4 2 1 6 6 C 1.53297 * 108.38242 * 129.48842 * 5 4 2 7 7 O 1.42959 * 109.22484 * 52.30039 * 6 5 4 8 8 C 1.42963 * 114.16720 * 297.42074 * 7 6 5 9 9 H 1.08998 * 109.55067 * 302.62676 * 8 7 6 10 10 C 1.50706 * 109.51358 * 182.50358 * 8 7 6 11 11 O 1.21281 * 119.99509 * 349.68247 * 10 8 7 12 12 N 1.34769 * 120.00185 * 169.68358 * 10 8 7 13 13 C 1.46496 * 120.00207 * 184.76396 * 12 10 8 14 14 C 1.46500 * 119.99918 * 4.76700 * 12 10 8 15 15 C 1.53036 * 109.46359 * 121.90183 * 14 12 10 16 16 C 1.53190 * 109.31770 * 181.37547 * 15 14 12 17 17 N 1.46931 * 108.77108 * 305.35910 * 16 15 14 18 18 C 1.36936 * 120.63403 * 233.58456 * 17 16 15 19 19 H 1.07994 * 119.99958 * 153.50536 * 18 17 16 20 20 C 1.38807 * 119.99673 * 333.50418 * 18 17 16 21 21 N 1.31623 * 120.00674 * 343.39000 * 20 18 17 22 22 Si 1.86801 * 119.99868 * 163.39103 * 20 18 17 23 23 H 1.48503 * 109.46891 * 270.00076 * 22 20 18 24 24 H 1.48502 * 109.47291 * 29.99656 * 22 20 18 25 25 H 1.48504 * 109.47460 * 149.99896 * 22 20 18 26 26 C 1.46928 * 118.73465 * 53.86272 * 17 16 15 27 27 C 1.53046 * 109.45032 * 241.96190 * 14 12 10 28 28 C 1.47149 * 120.98334 * 179.97438 * 4 2 1 29 29 H 1.08997 * 109.46450 * 240.00234 * 1 2 3 30 30 H 1.09004 * 109.47016 * 359.97438 * 1 2 3 31 31 H 1.08991 * 109.47452 * 119.99572 * 1 2 3 32 32 H 1.09001 * 109.67844 * 249.20827 * 5 4 2 33 33 H 1.08998 * 109.68348 * 9.76251 * 5 4 2 34 34 H 1.09001 * 109.51100 * 172.22696 * 6 5 4 35 35 H 1.08996 * 109.51437 * 292.32247 * 6 5 4 36 36 H 1.08995 * 109.47568 * 267.50833 * 13 12 10 37 37 H 1.09005 * 109.46746 * 27.51368 * 13 12 10 38 38 H 1.09002 * 109.47059 * 147.50912 * 13 12 10 39 39 H 1.09006 * 109.46082 * 1.92449 * 14 12 10 40 40 H 1.08996 * 109.50069 * 61.41482 * 15 14 12 41 41 H 1.09007 * 109.52036 * 301.34092 * 15 14 12 42 42 H 1.09002 * 109.58710 * 185.57720 * 16 15 14 43 43 H 1.08995 * 109.58980 * 65.14708 * 16 15 14 44 44 H 0.96998 * 120.00443 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.58904 * 65.92909 * 26 17 16 46 46 H 1.09005 * 109.58427 * 186.34869 * 26 17 16 47 47 H 1.08993 * 109.49661 * 298.57206 * 27 14 12 48 48 H 1.09004 * 109.49234 * 58.63788 * 27 14 12 49 49 H 1.09000 * 109.68290 * 110.79610 * 28 4 2 50 50 H 1.08997 * 109.68313 * 350.23002 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4670 -2.4540 -0.0005 6 6 2.0410 -3.3253 -1.1236 7 8 3.4630 -3.3881 -0.9907 8 6 4.1197 -2.1252 -1.1237 9 1 3.8716 -1.6851 -2.0895 10 6 5.6109 -2.3206 -1.0277 11 8 6.0609 -3.3910 -0.6774 12 7 6.4444 -1.3060 -1.3312 13 6 7.8929 -1.5253 -1.3392 14 6 5.9020 0.0163 -1.6529 15 6 6.4743 1.0522 -0.6826 16 6 5.8787 2.4274 -1.0001 17 7 6.1191 2.7309 -2.4175 18 6 6.7316 3.8987 -2.7868 19 1 7.2824 3.9496 -3.7143 20 6 6.6442 5.0169 -1.9691 21 7 5.7284 5.0723 -1.0254 22 14 7.8266 6.4432 -2.2079 23 1 9.0336 6.2313 -1.3692 24 1 8.2243 6.5227 -3.6364 25 1 7.1620 7.7095 -1.8079 26 6 5.6844 1.7604 -3.4313 27 6 6.2871 0.3902 -3.0862 28 6 3.6522 -1.1924 -0.0011 29 1 -0.3632 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5137 -0.8899 32 1 1.6079 -2.9519 0.9588 33 1 0.4044 -2.2844 -0.1741 34 1 1.6241 -4.3300 -1.0542 35 1 1.7838 -2.8904 -2.0894 36 1 8.3034 -1.2771 -0.3604 37 1 8.1007 -2.5710 -1.5659 38 1 8.3522 -0.8909 -2.0973 39 1 4.8159 -0.0049 -1.5625 40 1 7.5582 1.0915 -0.7900 41 1 6.2200 0.7729 0.3400 42 1 6.3560 3.1847 -0.3782 43 1 4.8063 2.4148 -0.8059 44 1 5.6676 5.8536 -0.4537 45 1 4.5963 1.6946 -3.4314 46 1 6.0333 2.0776 -4.4141 47 1 7.3727 0.4357 -3.1710 48 1 5.8995 -0.3609 -3.7746 49 1 4.0134 -1.5632 0.9581 50 1 4.0365 -0.1874 -0.1752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006360614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:33 Heat of formation + Delta-G solvation = -68.144827 kcal Electronic energy + Delta-G solvation = -32370.677825 eV Core-core repulsion = 28206.646153 eV Total energy + Delta-G solvation = -4164.031673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.95555 -39.64286 -38.30604 -37.49655 -35.14013 -34.82973 -32.43415 -32.26699 -30.19755 -30.08755 -29.51219 -28.56183 -26.49287 -25.20609 -24.51323 -22.78950 -22.23242 -22.07079 -19.66850 -19.42509 -18.94209 -17.47908 -17.29369 -16.94523 -16.55281 -16.25631 -15.76794 -15.40326 -15.27899 -14.94716 -14.61549 -14.52469 -13.96616 -13.77264 -13.69927 -13.57757 -13.28347 -13.09671 -12.84318 -12.66037 -12.55194 -12.46945 -12.33457 -12.18202 -11.92956 -11.80484 -11.50927 -11.15641 -11.06864 -10.79758 -10.74198 -10.44824 -10.34450 -10.24891 -10.11401 -9.97162 -9.77110 -9.73008 -9.47156 -8.80031 -8.55227 -8.34304 -6.69990 -5.76209 -3.19613 2.41076 2.55060 2.70127 2.79138 3.38757 3.45671 3.46897 3.71365 4.27967 4.38429 4.48131 4.50098 4.60461 4.71297 4.84327 4.87986 5.00711 5.03302 5.14914 5.25871 5.28569 5.36414 5.40400 5.43343 5.47504 5.49831 5.57041 5.65181 5.70238 5.76865 5.91374 5.98222 6.09682 6.16776 6.28156 6.37542 6.47549 6.57533 6.67809 6.70966 6.78100 6.91787 7.14870 7.38306 7.47117 7.72050 7.80552 8.05278 8.19044 8.45259 9.21765 9.84996 10.40449 11.31430 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.004032 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.674741 B = 6942.314076 C = 8562.211379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.516 6.516 4 N -0.621 5.621 5 C 0.071 3.929 6 C 0.045 3.955 7 O -0.351 6.351 8 C 0.063 3.937 9 H 0.088 0.912 10 C 0.523 3.477 11 O -0.527 6.527 12 N -0.603 5.603 13 C 0.088 3.912 14 C 0.130 3.870 15 C -0.146 4.146 16 C 0.170 3.830 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.291 1.291 26 C 0.148 3.852 27 C -0.142 4.142 28 C 0.081 3.919 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.254 0.746 45 H 0.019 0.981 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.052 0.948 49 H 0.080 0.920 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 -16.474 1.005 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.295 3.705 3 O -0.390 6.390 4 N -0.358 5.358 5 C -0.052 4.052 6 C -0.033 4.033 7 O -0.268 6.268 8 C 0.001 3.999 9 H 0.106 0.894 10 C 0.308 3.692 11 O -0.403 6.403 12 N -0.336 5.336 13 C -0.054 4.054 14 C 0.028 3.972 15 C -0.187 4.187 16 C 0.044 3.956 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.543 5.543 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.205 1.205 25 H -0.218 1.218 26 C 0.020 3.980 27 C -0.182 4.182 28 C -0.042 4.042 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.083 -16.459 1.334 18.846 hybrid contribution 0.331 0.913 -0.102 0.977 sum -8.752 -15.546 1.231 17.883 Atomic orbital electron populations 1.21933 0.91470 1.05826 1.03838 1.20941 0.90764 0.82862 0.75942 1.90884 1.70294 1.30310 1.47552 1.48181 1.06204 1.06201 1.75225 1.22493 0.97575 0.84478 1.00644 1.23071 0.81402 1.01321 0.97470 1.88082 1.18313 1.27170 1.93270 1.22271 0.91644 0.86101 0.99850 0.89402 1.19832 0.87288 0.84117 0.77916 1.90688 1.77665 1.25998 1.45990 1.48120 1.06891 1.10620 1.67957 1.21593 0.79413 1.02377 1.02048 1.21623 0.98542 0.80544 0.96515 1.22595 1.01342 0.97997 0.96721 1.20857 0.97597 0.91096 0.86063 1.44097 1.68463 1.18465 1.00293 1.19188 1.24775 0.87616 1.06810 0.91567 1.25031 0.97740 0.97124 0.99686 1.70031 1.32236 1.29455 1.22620 0.86301 0.80742 0.81965 0.77803 1.21481 1.20489 1.21781 1.20940 0.95682 0.87845 0.93499 1.22506 1.01990 0.99351 0.94367 1.22399 0.80594 1.02537 0.98717 0.89472 0.88606 0.89451 0.90185 0.88331 0.87000 0.92278 0.92616 0.90908 0.90674 0.89335 0.91943 0.92966 0.88679 0.95457 0.93564 0.96345 0.92346 0.91494 0.92926 0.90188 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 8.69 36.00 0.31 -1.04 16 2 C 0.51 6.63 7.82 -10.99 -0.09 6.55 16 3 O -0.52 -9.72 16.55 5.55 0.09 -9.63 16 4 N -0.62 -7.21 3.02 -172.29 -0.52 -7.73 16 5 C 0.07 0.53 6.54 -3.53 -0.02 0.51 16 6 C 0.05 0.37 6.98 37.31 0.26 0.63 16 7 O -0.35 -4.62 9.94 -54.90 -0.55 -5.17 16 8 C 0.06 0.88 2.34 -27.74 -0.06 0.81 16 9 H 0.09 1.17 7.49 -51.93 -0.39 0.78 16 10 C 0.52 8.38 7.04 -10.99 -0.08 8.30 16 11 O -0.53 -9.94 16.12 -14.11 -0.23 -10.17 16 12 N -0.60 -9.17 2.76 -173.88 -0.48 -9.65 16 13 C 0.09 1.20 9.46 59.84 0.57 1.77 16 14 C 0.13 2.13 1.71 -67.89 -0.12 2.01 16 15 C -0.15 -2.74 5.14 -26.61 -0.14 -2.88 16 16 C 0.17 4.03 5.32 -3.71 -0.02 4.01 16 17 N -0.59 -14.46 3.00 -172.05 -0.52 -14.98 16 18 C -0.25 -6.87 9.61 -15.06 -0.14 -7.02 16 19 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 21 N -0.90 -26.17 11.05 55.49 0.61 -25.56 16 22 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.15 2.99 6.54 -3.49 -0.02 2.97 16 27 C -0.14 -2.36 5.36 -26.39 -0.14 -2.50 16 28 C 0.08 1.11 5.50 -3.55 -0.02 1.09 16 29 H 0.09 0.48 8.02 -51.93 -0.42 0.07 16 30 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.09 0.49 7.66 -51.93 -0.40 0.09 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.42 6.05 -51.93 -0.31 0.11 16 34 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.98 7.42 -51.93 -0.39 0.60 16 38 H 0.07 0.96 6.56 -51.93 -0.34 0.62 16 39 H 0.09 1.48 3.97 -51.93 -0.21 1.28 16 40 H 0.06 1.18 7.68 -51.93 -0.40 0.78 16 41 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.10 2.55 5.91 -51.93 -0.31 2.24 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 46 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 47 H 0.07 1.12 6.80 -51.93 -0.35 0.77 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 50 H 0.12 1.97 4.41 -51.93 -0.23 1.74 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -35.14 383.80 -8.55 -43.69 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.92 Total: 1.60 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 0.20 Total: 15.22 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.90 Total: -57.91 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.68 Total: -24.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.14 -8.55 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006360614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.453 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds