Wall clock time and date at job start Sat Apr 11 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00521 * 2 1 4 4 N 1.34778 * 120.00181 * 180.02562 * 2 1 3 5 5 C 1.47159 * 120.97801 * 359.97391 * 4 2 1 6 6 C 1.53297 * 108.38242 * 129.48842 * 5 4 2 7 7 O 1.42959 * 109.22484 * 52.30039 * 6 5 4 8 8 C 1.42963 * 114.16720 * 297.42074 * 7 6 5 9 9 H 1.08998 * 109.55067 * 302.62676 * 8 7 6 10 10 C 1.50706 * 109.51358 * 182.50358 * 8 7 6 11 11 O 1.21281 * 119.99509 * 349.68247 * 10 8 7 12 12 N 1.34769 * 120.00185 * 169.68358 * 10 8 7 13 13 C 1.46496 * 120.00207 * 184.76396 * 12 10 8 14 14 C 1.46500 * 119.99918 * 4.76700 * 12 10 8 15 15 C 1.53036 * 109.46359 * 121.90183 * 14 12 10 16 16 C 1.53190 * 109.31770 * 181.37547 * 15 14 12 17 17 N 1.46931 * 108.77108 * 305.35910 * 16 15 14 18 18 C 1.36936 * 120.63403 * 233.58456 * 17 16 15 19 19 H 1.07994 * 119.99958 * 153.50536 * 18 17 16 20 20 C 1.38807 * 119.99673 * 333.50418 * 18 17 16 21 21 N 1.31623 * 120.00674 * 343.39000 * 20 18 17 22 22 Si 1.86801 * 119.99868 * 163.39103 * 20 18 17 23 23 H 1.48503 * 109.46891 * 270.00076 * 22 20 18 24 24 H 1.48502 * 109.47291 * 29.99656 * 22 20 18 25 25 H 1.48504 * 109.47460 * 149.99896 * 22 20 18 26 26 C 1.46928 * 118.73465 * 53.86272 * 17 16 15 27 27 C 1.53046 * 109.45032 * 241.96190 * 14 12 10 28 28 C 1.47149 * 120.98334 * 179.97438 * 4 2 1 29 29 H 1.08997 * 109.46450 * 240.00234 * 1 2 3 30 30 H 1.09004 * 109.47016 * 359.97438 * 1 2 3 31 31 H 1.08991 * 109.47452 * 119.99572 * 1 2 3 32 32 H 1.09001 * 109.67844 * 249.20827 * 5 4 2 33 33 H 1.08998 * 109.68348 * 9.76251 * 5 4 2 34 34 H 1.09001 * 109.51100 * 172.22696 * 6 5 4 35 35 H 1.08996 * 109.51437 * 292.32247 * 6 5 4 36 36 H 1.08995 * 109.47568 * 267.50833 * 13 12 10 37 37 H 1.09005 * 109.46746 * 27.51368 * 13 12 10 38 38 H 1.09002 * 109.47059 * 147.50912 * 13 12 10 39 39 H 1.09006 * 109.46082 * 1.92449 * 14 12 10 40 40 H 1.08996 * 109.50069 * 61.41482 * 15 14 12 41 41 H 1.09007 * 109.52036 * 301.34092 * 15 14 12 42 42 H 1.09002 * 109.58710 * 185.57720 * 16 15 14 43 43 H 1.08995 * 109.58980 * 65.14708 * 16 15 14 44 44 H 0.96998 * 120.00443 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.58904 * 65.92909 * 26 17 16 46 46 H 1.09005 * 109.58427 * 186.34869 * 26 17 16 47 47 H 1.08993 * 109.49661 * 298.57206 * 27 14 12 48 48 H 1.09004 * 109.49234 * 58.63788 * 27 14 12 49 49 H 1.09000 * 109.68290 * 110.79610 * 28 4 2 50 50 H 1.08997 * 109.68313 * 350.23002 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4670 -2.4540 -0.0005 6 6 2.0410 -3.3253 -1.1236 7 8 3.4630 -3.3881 -0.9907 8 6 4.1197 -2.1252 -1.1237 9 1 3.8716 -1.6851 -2.0895 10 6 5.6109 -2.3206 -1.0277 11 8 6.0609 -3.3910 -0.6774 12 7 6.4444 -1.3060 -1.3312 13 6 7.8929 -1.5253 -1.3392 14 6 5.9020 0.0163 -1.6529 15 6 6.4743 1.0522 -0.6826 16 6 5.8787 2.4274 -1.0001 17 7 6.1191 2.7309 -2.4175 18 6 6.7316 3.8987 -2.7868 19 1 7.2824 3.9496 -3.7143 20 6 6.6442 5.0169 -1.9691 21 7 5.7284 5.0723 -1.0254 22 14 7.8266 6.4432 -2.2079 23 1 9.0336 6.2313 -1.3692 24 1 8.2243 6.5227 -3.6364 25 1 7.1620 7.7095 -1.8079 26 6 5.6844 1.7604 -3.4313 27 6 6.2871 0.3902 -3.0862 28 6 3.6522 -1.1924 -0.0011 29 1 -0.3632 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5137 -0.8899 32 1 1.6079 -2.9519 0.9588 33 1 0.4044 -2.2844 -0.1741 34 1 1.6241 -4.3300 -1.0542 35 1 1.7838 -2.8904 -2.0894 36 1 8.3034 -1.2771 -0.3604 37 1 8.1007 -2.5710 -1.5659 38 1 8.3522 -0.8909 -2.0973 39 1 4.8159 -0.0049 -1.5625 40 1 7.5582 1.0915 -0.7900 41 1 6.2200 0.7729 0.3400 42 1 6.3560 3.1847 -0.3782 43 1 4.8063 2.4148 -0.8059 44 1 5.6676 5.8536 -0.4537 45 1 4.5963 1.6946 -3.4314 46 1 6.0333 2.0776 -4.4141 47 1 7.3727 0.4357 -3.1710 48 1 5.8995 -0.3609 -3.7746 49 1 4.0134 -1.5632 0.9581 50 1 4.0365 -0.1874 -0.1752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006360614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:31 Heat of formation + Delta-G solvation = -92.169975 kcal Electronic energy + Delta-G solvation = -32371.719634 eV Core-core repulsion = 28206.646153 eV Total energy + Delta-G solvation = -4165.073481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.05944 -40.79918 -39.49506 -38.90591 -36.67897 -35.90109 -34.10376 -33.37826 -31.88717 -31.27033 -30.85016 -29.49975 -27.61542 -26.96576 -25.55308 -24.00368 -23.88782 -23.43037 -21.07097 -20.63513 -20.11919 -18.87989 -18.60039 -18.09031 -17.83773 -17.29865 -16.88463 -16.68420 -16.53161 -16.29587 -15.87697 -15.72978 -15.43364 -15.31076 -14.90450 -14.74737 -14.61673 -14.48260 -14.26376 -13.93734 -13.76818 -13.63532 -13.21892 -13.12045 -13.06620 -13.00488 -12.93855 -12.73447 -12.61068 -12.44093 -12.07052 -12.01622 -11.94010 -11.87740 -11.52651 -11.44476 -11.39937 -11.01961 -10.79926 -10.55180 -9.80218 -9.71617 -8.72198 -7.85157 -5.31450 1.23558 1.47502 1.48914 1.55263 1.57800 1.59876 1.82042 2.51992 2.67904 3.27574 3.30501 3.39560 3.56612 3.63998 3.69847 3.71419 3.93630 3.95007 4.12838 4.14962 4.23449 4.28540 4.38827 4.42486 4.45315 4.50920 4.55934 4.63431 4.64178 4.68434 4.71708 4.85273 4.86223 4.89122 4.93949 5.00527 5.07139 5.08856 5.21435 5.28246 5.33836 5.50023 5.64729 5.74490 5.88657 6.19570 6.27331 6.38975 6.92887 7.08896 7.14471 7.85644 8.36844 9.20827 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.004032 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.674741 B = 6942.314076 C = 8562.211379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.498 3.502 3 O -0.589 6.589 4 N -0.618 5.618 5 C 0.068 3.932 6 C 0.036 3.964 7 O -0.372 6.372 8 C 0.075 3.925 9 H 0.093 0.907 10 C 0.522 3.478 11 O -0.556 6.556 12 N -0.598 5.598 13 C 0.084 3.916 14 C 0.144 3.856 15 C -0.130 4.130 16 C 0.184 3.816 17 N -0.607 5.607 18 C -0.261 4.261 19 H 0.073 0.927 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.286 1.286 24 H -0.266 1.266 25 H -0.298 1.298 26 C 0.144 3.856 27 C -0.128 4.128 28 C 0.083 3.917 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.059 0.941 43 H -0.008 1.008 44 H 0.248 0.752 45 H 0.012 0.988 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.611 -18.755 -0.092 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.289 3.711 3 O -0.469 6.469 4 N -0.353 5.353 5 C -0.053 4.053 6 C -0.040 4.040 7 O -0.291 6.291 8 C 0.013 3.987 9 H 0.111 0.889 10 C 0.309 3.691 11 O -0.434 6.434 12 N -0.330 5.330 13 C -0.058 4.058 14 C 0.041 3.959 15 C -0.170 4.170 16 C 0.057 3.943 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.091 0.909 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.795 3.205 23 H -0.213 1.213 24 H -0.191 1.191 25 H -0.225 1.225 26 C 0.018 3.982 27 C -0.168 4.168 28 C -0.041 4.041 29 H 0.138 0.862 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.010 0.990 44 H 0.057 0.943 45 H 0.030 0.970 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.997 -18.814 0.209 21.306 hybrid contribution 0.532 1.531 0.234 1.638 sum -9.466 -17.282 0.443 19.710 Atomic orbital electron populations 1.21977 0.87000 1.06220 1.06885 1.21972 0.92831 0.82035 0.74241 1.90864 1.72017 1.32944 1.51066 1.48331 1.05298 1.07659 1.74025 1.22849 0.99310 0.82149 1.00991 1.23467 0.78871 1.03492 0.98165 1.88061 1.21111 1.26469 1.93425 1.22057 0.90301 0.86623 0.99757 0.88907 1.20217 0.88296 0.83576 0.77036 1.90669 1.78370 1.27020 1.47334 1.48042 1.07654 1.09796 1.67545 1.21735 0.78410 1.02937 1.02699 1.21316 0.98322 0.80459 0.95780 1.22310 1.01069 0.95889 0.97761 1.20487 0.95303 0.92805 0.85678 1.44344 1.68710 1.18783 1.01218 1.19567 1.24333 0.88405 1.06752 0.90934 1.25798 0.99297 0.99779 0.99824 1.70218 1.34199 1.29949 1.23847 0.85273 0.78471 0.78510 0.78233 1.21260 1.19053 1.22520 1.21089 0.95491 0.88807 0.92807 1.22334 1.02108 0.97625 0.94735 1.22144 0.82605 1.00826 0.98531 0.86236 0.89743 0.86127 0.89346 0.84186 0.83780 0.91335 0.92313 0.90512 0.89492 0.89577 0.91589 0.92542 0.92261 0.98959 0.94265 0.97044 0.91679 0.90945 0.89999 0.90838 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.69 71.24 0.62 -1.53 16 2 C 0.50 12.88 7.82 87.66 0.69 13.57 16 3 O -0.59 -23.54 16.55 -3.04 -0.05 -23.59 16 4 N -0.62 -13.63 3.02 -817.40 -2.47 -16.10 16 5 C 0.07 0.79 6.54 86.35 0.56 1.35 16 6 C 0.04 0.48 6.98 72.08 0.50 0.98 16 7 O -0.37 -9.07 9.94 -130.18 -1.29 -10.37 16 8 C 0.07 2.00 2.34 29.94 0.07 2.07 16 9 H 0.09 2.36 7.49 -2.39 -0.02 2.34 16 10 C 0.52 16.30 7.04 87.66 0.62 16.91 16 11 O -0.56 -20.50 16.12 15.77 0.25 -20.24 16 12 N -0.60 -17.60 2.76 -822.44 -2.27 -19.87 16 13 C 0.08 2.17 9.46 127.77 1.21 3.37 16 14 C 0.14 4.67 1.71 45.02 0.08 4.75 16 15 C -0.13 -5.00 5.14 30.67 0.16 -4.84 16 16 C 0.18 9.17 5.32 86.36 0.46 9.63 16 17 N -0.61 -30.41 3.00 -698.26 -2.09 -32.51 16 18 C -0.26 -14.26 9.61 84.03 0.81 -13.45 16 19 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 20 C -0.05 -2.92 4.94 84.86 0.42 -2.50 16 21 N -0.94 -56.93 11.05 21.65 0.24 -56.70 16 22 Si 0.97 45.24 29.58 68.60 2.03 47.27 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 C 0.14 5.81 6.54 86.51 0.57 6.37 16 27 C -0.13 -4.06 5.36 30.82 0.17 -3.89 16 28 C 0.08 2.32 5.50 86.34 0.47 2.80 16 29 H 0.12 0.84 8.02 -2.39 -0.02 0.82 16 30 H 0.08 1.37 8.12 -2.38 -0.02 1.35 16 31 H 0.12 0.82 7.66 -2.39 -0.02 0.80 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.14 0.46 6.05 -2.39 -0.01 0.45 16 34 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.95 7.42 -2.38 -0.02 1.93 16 38 H 0.09 2.04 6.56 -2.39 -0.02 2.03 16 39 H 0.09 2.93 3.97 -2.38 -0.01 2.92 16 40 H 0.07 2.48 7.68 -2.39 -0.02 2.46 16 41 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.06 3.38 5.91 -2.39 -0.01 3.36 16 43 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.06 2.51 7.93 -2.38 -0.02 2.49 16 47 H 0.07 2.26 6.80 -2.39 -0.02 2.24 16 48 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 50 H 0.09 3.16 4.41 -2.39 -0.01 3.15 16 Total: -1.00 -81.67 383.80 2.68 -78.99 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.94 Total: 17.53 kcal Atomic # 6 Polarization: 28.18 SS G_CDS: 7.39 Total: 35.58 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -6.59 Total: -125.17 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -1.09 Total: -54.20 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -81.67 2.68 -78.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006360614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.184 kcal (2) G-P(sol) polarization free energy of solvation -81.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds