Wall clock time and date at job start Sat Apr 11 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00250 * 2 1 4 4 N 1.34774 * 120.00394 * 180.02562 * 2 1 3 5 5 C 1.47157 * 120.97751 * 359.97438 * 4 2 1 6 6 C 1.53298 * 108.38301 * 230.55722 * 5 4 2 7 7 O 1.42963 * 109.22422 * 307.69875 * 6 5 4 8 8 C 1.42957 * 114.16414 * 62.57730 * 7 6 5 9 9 H 1.09007 * 109.51063 * 57.40171 * 8 7 6 10 10 C 1.50698 * 109.51040 * 177.49142 * 8 7 6 11 11 O 1.21280 * 120.00073 * 5.01209 * 10 8 7 12 12 N 1.34781 * 120.00170 * 185.00083 * 10 8 7 13 13 C 1.46498 * 119.99715 * 0.02562 * 12 10 8 14 14 C 1.46503 * 120.00058 * 180.02562 * 12 10 8 15 15 C 1.53038 * 109.45605 * 120.00255 * 14 12 10 16 16 C 1.53193 * 109.31189 * 181.38546 * 15 14 12 17 17 N 1.46924 * 108.77475 * 305.37051 * 16 15 14 18 18 C 1.36944 * 120.62776 * 233.58699 * 17 16 15 19 19 H 1.07998 * 119.99976 * 27.68401 * 18 17 16 20 20 C 1.38812 * 119.99668 * 207.69197 * 18 17 16 21 21 N 1.31617 * 120.00378 * 17.36465 * 20 18 17 22 22 Si 1.86807 * 119.99569 * 197.36515 * 20 18 17 23 23 H 1.48498 * 109.47304 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46961 * 120.00130 * 22 20 18 25 25 H 1.48499 * 109.46781 * 239.99743 * 22 20 18 26 26 C 1.46923 * 118.74467 * 53.60395 * 17 16 15 27 27 C 1.53034 * 109.46330 * 240.07136 * 14 12 10 28 28 C 1.47144 * 120.98587 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.46923 * 269.99924 * 1 2 3 30 30 H 1.09002 * 109.47075 * 29.99708 * 1 2 3 31 31 H 1.08996 * 109.47237 * 149.99924 * 1 2 3 32 32 H 1.08999 * 109.67801 * 110.83574 * 5 4 2 33 33 H 1.08996 * 109.71232 * 350.30014 * 5 4 2 34 34 H 1.09006 * 109.50691 * 187.77818 * 6 5 4 35 35 H 1.08999 * 109.55597 * 67.65119 * 6 5 4 36 36 H 1.08998 * 109.46859 * 269.99449 * 13 12 10 37 37 H 1.08994 * 109.47348 * 29.99586 * 13 12 10 38 38 H 1.09000 * 109.46876 * 149.99640 * 13 12 10 39 39 H 1.09002 * 109.44616 * 0.04084 * 14 12 10 40 40 H 1.08999 * 109.49981 * 301.33879 * 15 14 12 41 41 H 1.08996 * 109.50014 * 61.43762 * 15 14 12 42 42 H 1.09002 * 109.58758 * 65.15128 * 16 15 14 43 43 H 1.08994 * 109.59007 * 185.57824 * 16 15 14 44 44 H 0.96999 * 120.00020 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.59086 * 186.60270 * 26 17 16 46 46 H 1.09000 * 109.58307 * 66.18245 * 26 17 16 47 47 H 1.09002 * 109.49852 * 298.57064 * 27 14 12 48 48 H 1.09011 * 109.49750 * 58.62907 * 27 14 12 49 49 H 1.09004 * 109.68633 * 9.71863 * 28 4 2 50 50 H 1.09005 * 109.68391 * 249.16690 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4671 -2.4540 -0.0005 6 6 2.0412 -3.3253 1.1225 7 8 3.4632 -3.3881 0.9894 8 6 4.1198 -2.1252 1.1224 9 1 3.8717 -1.6859 2.0887 10 6 5.6109 -2.3206 1.0264 11 8 6.0637 -3.4161 0.7700 12 7 6.4415 -1.2778 1.2253 13 6 5.8945 0.0454 1.5353 14 6 7.8911 -1.4677 1.1314 15 6 8.4527 -0.5675 0.0285 16 6 9.9632 -0.7940 -0.0902 17 7 10.5774 -0.5877 1.2285 18 6 11.6201 0.2864 1.3834 19 1 11.7209 1.1301 0.7168 20 6 12.5474 0.0878 2.3970 21 7 12.6396 -1.0867 2.9839 22 14 13.6645 1.4877 2.9283 23 1 13.3642 2.6954 2.1180 24 1 13.4357 1.7855 4.3650 25 1 15.0818 1.0947 2.7238 26 6 10.0519 -1.3373 2.3777 27 6 8.5406 -1.1046 2.4687 28 6 3.6522 -1.1923 0.0000 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6079 -2.9518 -0.9599 33 1 0.4044 -2.2849 0.1728 34 1 1.6243 -4.3301 1.0529 35 1 1.7848 -2.8908 2.0887 36 1 5.7228 0.5936 0.6090 37 1 4.9519 -0.0674 2.0708 38 1 6.6020 0.5944 2.1567 39 1 8.1060 -2.5097 0.8943 40 1 7.9727 -0.8108 -0.9194 41 1 8.2599 0.4760 0.2772 42 1 10.1545 -1.8129 -0.4269 43 1 10.3839 -0.0860 -0.8041 44 1 13.2874 -1.2253 3.6925 45 1 10.5312 -0.9876 3.2921 46 1 10.2505 -2.4004 2.2422 47 1 8.3468 -0.0560 2.6944 48 1 8.1226 -1.7299 3.2578 49 1 4.0366 -0.1873 0.1741 50 1 4.0134 -1.5630 -0.9593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006360621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:37 Heat of formation + Delta-G solvation = -70.967534 kcal Electronic energy + Delta-G solvation = -31194.073952 eV Core-core repulsion = 27029.919877 eV Total energy + Delta-G solvation = -4164.154074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.06705 -39.82602 -38.52057 -37.26798 -35.38436 -35.03239 -33.03188 -31.96622 -30.39256 -30.16283 -29.61551 -28.03516 -27.00564 -25.37039 -24.61701 -23.20187 -22.20007 -21.81352 -19.85509 -19.43208 -18.87960 -17.68001 -17.47169 -17.01803 -16.66902 -16.41947 -15.98522 -15.75991 -15.43978 -14.91581 -14.68912 -14.53306 -14.05621 -14.00611 -13.79516 -13.62478 -13.49102 -13.07119 -13.03235 -12.82566 -12.62544 -12.57406 -12.48752 -12.32633 -12.03934 -11.95263 -11.48071 -11.28337 -11.11997 -10.80943 -10.72770 -10.63676 -10.34123 -10.26837 -10.19061 -10.08775 -9.76447 -9.68681 -9.47443 -9.05265 -8.55730 -8.33428 -6.69073 -5.78866 -3.21005 2.14421 2.29803 2.63623 2.66521 3.37352 3.45454 3.47590 3.62385 4.04073 4.19389 4.34686 4.40224 4.49785 4.49991 4.61265 4.68761 4.74908 4.90446 4.99426 5.10522 5.14481 5.22589 5.29843 5.35728 5.38532 5.41135 5.43656 5.49933 5.64046 5.73780 5.80981 5.86948 6.07979 6.19924 6.32434 6.48436 6.53300 6.59828 6.62839 6.77408 6.84138 6.89865 6.96583 7.33674 7.46943 7.65748 7.67074 7.80217 8.21273 8.44641 9.20919 9.84301 10.40951 11.29898 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.002519 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.188878 B =11114.339432 C =11784.229948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.514 3.486 3 O -0.539 6.539 4 N -0.618 5.618 5 C 0.068 3.932 6 C 0.045 3.955 7 O -0.348 6.348 8 C 0.064 3.936 9 H 0.087 0.913 10 C 0.520 3.480 11 O -0.516 6.516 12 N -0.603 5.603 13 C 0.069 3.931 14 C 0.146 3.854 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.174 3.826 27 C -0.146 4.146 28 C 0.082 3.918 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.253 0.747 45 H 0.091 0.909 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.115 0.885 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.966 -1.215 -3.873 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.303 3.697 3 O -0.416 6.416 4 N -0.353 5.353 5 C -0.055 4.055 6 C -0.032 4.032 7 O -0.265 6.265 8 C 0.001 3.999 9 H 0.105 0.895 10 C 0.304 3.696 11 O -0.391 6.391 12 N -0.337 5.337 13 C -0.074 4.074 14 C 0.045 3.955 15 C -0.178 4.178 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.047 3.953 27 C -0.186 4.186 28 C -0.041 4.041 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.133 0.867 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -27.174 -1.445 -3.931 27.495 hybrid contribution 0.261 0.862 0.445 1.005 sum -26.913 -0.582 -3.486 27.144 Atomic orbital electron populations 1.21964 0.91352 1.05112 1.04967 1.20891 0.90752 0.82739 0.75312 1.90750 1.70608 1.30767 1.49479 1.48226 1.06541 1.06307 1.74245 1.22600 0.97636 0.84247 1.01057 1.23073 0.81556 1.01439 0.97174 1.88140 1.18138 1.27090 1.93153 1.22291 0.92086 0.86106 0.99372 0.89524 1.19802 0.86937 0.84842 0.77971 1.90729 1.77162 1.24380 1.46818 1.48112 1.07498 1.08636 1.69425 1.21939 0.99479 0.84692 1.01244 1.21251 0.75788 1.01566 0.96891 1.22372 0.99119 0.99458 0.96841 1.20868 0.89588 0.98263 0.89218 1.44110 1.36569 1.49223 1.01617 1.19225 1.01628 1.02335 1.14936 0.91563 1.25049 0.97234 0.96191 1.01229 1.70043 1.36990 1.20308 1.27305 0.86237 0.80302 0.82000 0.78323 1.20258 1.21582 1.21739 1.20766 0.86836 0.94532 0.93149 1.22578 1.00466 1.00749 0.94804 1.22331 0.80105 1.02373 0.99252 0.88614 0.88599 0.89838 0.89917 0.88104 0.86834 0.92331 0.92086 0.91720 0.89792 0.88536 0.92902 0.91962 0.96163 0.92399 0.93641 0.89046 0.96092 0.92286 0.93004 0.86685 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 9.45 36.00 0.34 -0.42 16 2 C 0.51 4.64 7.82 -10.99 -0.09 4.55 16 3 O -0.54 -7.21 16.57 5.55 0.09 -7.12 16 4 N -0.62 -5.20 3.02 -172.30 -0.52 -5.72 16 5 C 0.07 0.36 6.39 -3.53 -0.02 0.33 16 6 C 0.05 0.30 6.98 37.31 0.26 0.56 16 7 O -0.35 -4.18 9.92 -55.06 -0.55 -4.73 16 8 C 0.06 0.75 2.37 -27.76 -0.07 0.68 16 9 H 0.09 0.90 7.13 -51.93 -0.37 0.53 16 10 C 0.52 8.10 7.10 -10.98 -0.08 8.02 16 11 O -0.52 -10.23 15.84 -14.28 -0.23 -10.46 16 12 N -0.60 -8.96 2.76 -173.89 -0.48 -9.44 16 13 C 0.07 0.81 8.01 59.85 0.48 1.29 16 14 C 0.15 2.61 2.48 -67.89 -0.17 2.44 16 15 C -0.14 -2.43 5.34 -26.61 -0.14 -2.57 16 16 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 17 N -0.59 -14.79 2.99 -172.33 -0.52 -15.30 16 18 C -0.25 -6.86 9.59 -15.06 -0.14 -7.01 16 19 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 21 N -0.90 -26.23 11.19 55.49 0.62 -25.61 16 22 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.17 4.15 5.31 -3.72 -0.02 4.13 16 27 C -0.15 -2.80 5.31 -26.62 -0.14 -2.94 16 28 C 0.08 0.87 5.57 -3.56 -0.02 0.85 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.17 6.28 -51.93 -0.33 -0.15 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.20 5.68 -51.93 -0.30 -0.09 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.67 7.18 -51.93 -0.37 0.30 16 37 H 0.06 0.63 6.02 -51.93 -0.31 0.32 16 38 H 0.08 1.02 6.46 -51.93 -0.34 0.68 16 39 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.10 6.73 -51.93 -0.35 0.75 16 48 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 49 H 0.12 1.28 4.32 -51.93 -0.22 1.06 16 50 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -35.52 382.33 -8.61 -44.13 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.85 Total: -1.11 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 0.08 Total: 12.99 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.90 Total: -56.07 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.68 Total: -22.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.52 -8.61 -44.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006360621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.837 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds