Wall clock time and date at job start Sat Apr 11 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 120.00303 * 2 1 4 4 N 1.34783 * 120.00243 * 179.97438 * 2 1 3 5 5 C 1.47149 * 120.97827 * 4.09003 * 4 2 1 6 6 C 1.53298 * 108.38213 * 129.48349 * 5 4 2 7 7 O 1.42958 * 109.21921 * 52.30323 * 6 5 4 8 8 C 1.42958 * 114.17077 * 297.41522 * 7 6 5 9 9 C 1.47149 * 120.98366 * 184.11130 * 4 2 1 10 10 H 1.09001 * 109.71234 * 110.77147 * 9 4 2 11 11 C 1.50703 * 109.68100 * 350.23807 * 9 4 2 12 12 O 1.21281 * 120.00268 * 297.20704 * 11 9 4 13 13 N 1.34776 * 120.00117 * 117.20783 * 11 9 4 14 14 C 1.46509 * 119.99837 * 4.49232 * 13 11 9 15 15 C 1.46498 * 120.00393 * 184.49410 * 13 11 9 16 16 C 1.53037 * 109.46324 * 119.99804 * 15 13 11 17 17 C 1.53186 * 109.31429 * 181.38830 * 16 15 13 18 18 N 1.46929 * 108.77431 * 305.36378 * 17 16 15 19 19 C 1.36938 * 120.62888 * 233.58973 * 18 17 16 20 20 H 1.08004 * 120.00078 * 139.43847 * 19 18 17 21 21 C 1.38812 * 119.99951 * 319.42531 * 19 18 17 22 22 N 1.31622 * 119.99936 * 174.59534 * 21 19 18 23 23 Si 1.86794 * 120.00132 * 354.60559 * 21 19 18 24 24 H 1.48498 * 109.47333 * 87.23830 * 23 21 19 25 25 H 1.48505 * 109.47019 * 207.23916 * 23 21 19 26 26 H 1.48498 * 109.47169 * 327.23665 * 23 21 19 27 27 C 1.46925 * 118.73873 * 53.60945 * 18 17 16 28 28 C 1.53044 * 109.45959 * 240.06854 * 15 13 11 29 29 H 1.08995 * 109.47626 * 272.97408 * 1 2 3 30 30 H 1.09004 * 109.46782 * 32.97475 * 1 2 3 31 31 H 1.09000 * 109.46887 * 152.97007 * 1 2 3 32 32 H 1.09001 * 109.68109 * 9.76021 * 5 4 2 33 33 H 1.08997 * 109.68440 * 249.20563 * 5 4 2 34 34 H 1.08989 * 109.51480 * 292.37506 * 6 5 4 35 35 H 1.09003 * 109.50951 * 172.22336 * 6 5 4 36 36 H 1.09003 * 109.50987 * 302.66079 * 8 7 6 37 37 H 1.08996 * 109.55660 * 182.53429 * 8 7 6 38 38 H 1.09002 * 109.46833 * 274.94032 * 14 13 11 39 39 H 1.09003 * 109.46933 * 34.93979 * 14 13 11 40 40 H 1.08994 * 109.47285 * 154.94152 * 14 13 11 41 41 H 1.09000 * 109.44741 * 0.03004 * 15 13 11 42 42 H 1.09006 * 109.49547 * 61.43086 * 16 15 13 43 43 H 1.08997 * 109.49801 * 301.34198 * 16 15 13 44 44 H 1.08991 * 109.59128 * 65.15475 * 17 16 15 45 45 H 1.08999 * 109.58608 * 185.43930 * 17 16 15 46 46 H 0.96996 * 119.99860 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.58986 * 66.17850 * 27 18 17 48 48 H 1.09004 * 109.58770 * 186.60657 * 27 18 17 49 49 H 1.08995 * 109.49844 * 58.65799 * 28 15 13 50 50 H 1.08999 * 109.52058 * 298.58068 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4699 -2.4524 -0.0889 6 6 2.1135 -3.2844 -1.2041 7 8 3.5245 -3.3534 -0.9852 8 6 4.1868 -2.0873 -1.0329 9 6 3.6494 -1.1940 0.0910 10 1 3.9509 -1.5983 1.0573 11 6 4.1932 0.2026 -0.0668 12 8 4.0196 0.8074 -1.1036 13 7 4.8724 0.7796 0.9443 14 6 5.1674 0.0151 2.1587 15 6 5.3155 2.1711 0.8290 16 6 4.6867 3.0011 1.9504 17 6 5.1246 4.4620 1.8062 18 7 6.5925 4.5140 1.7674 19 6 7.2851 5.3213 2.6298 20 1 8.1972 4.9667 3.0868 21 6 6.8150 6.5956 2.9164 22 7 7.4201 7.3314 3.8246 23 14 5.3234 7.2659 2.0135 24 1 4.0873 6.8555 2.7267 25 1 5.3985 8.7483 1.9660 26 1 5.2988 6.7270 0.6300 27 6 7.3031 3.6836 0.7854 28 6 6.8407 2.2314 0.9411 29 1 -0.3634 0.0533 1.0262 30 1 -0.3633 0.8622 -0.5594 31 1 -0.3633 -0.9154 -0.4670 32 1 0.4199 -2.2756 -0.3221 33 1 1.5514 -2.9838 0.8593 34 1 1.9170 -2.8152 -2.1680 35 1 1.6942 -4.2905 -1.1958 36 1 3.9979 -1.6137 -1.9963 37 1 5.2592 -2.2315 -0.9021 38 1 4.3170 0.0703 2.8384 39 1 5.3555 -1.0260 1.8960 40 1 6.0491 0.4320 2.6453 41 1 5.0063 2.5717 -0.1365 42 1 5.0153 2.6163 2.9159 43 1 3.6005 2.9387 1.8840 44 1 4.7198 4.8754 0.8826 45 1 4.7589 5.0386 2.6558 46 1 7.0914 8.2217 4.0251 47 1 7.0759 4.0334 -0.2216 48 1 8.3768 3.7461 0.9627 49 1 7.2876 1.6212 0.1563 50 1 7.1495 1.8537 1.9158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006428999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:42 Heat of formation + Delta-G solvation = -57.039280 kcal Electronic energy + Delta-G solvation = -32172.542992 eV Core-core repulsion = 28008.992892 eV Total energy + Delta-G solvation = -4163.550100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.29255 -39.26818 -38.56703 -37.40139 -35.18971 -35.06979 -32.82185 -32.01781 -30.30898 -30.25006 -30.17024 -27.94398 -26.87660 -25.61533 -24.41351 -22.76090 -22.63532 -21.90555 -20.43309 -19.16799 -18.74267 -17.64770 -17.27299 -16.97696 -16.76426 -16.22387 -15.89093 -15.64559 -15.40449 -15.10089 -14.75657 -14.65514 -14.09569 -13.96230 -13.83943 -13.62286 -13.44157 -12.99510 -12.91293 -12.84519 -12.66204 -12.47772 -12.41370 -12.26778 -12.20236 -11.80960 -11.72235 -11.65631 -11.41183 -10.83375 -10.74236 -10.67281 -10.43143 -10.11890 -9.99144 -9.77746 -9.65288 -9.50862 -9.37989 -8.97273 -8.57213 -8.26652 -6.71765 -5.90706 -3.43272 2.18556 2.39560 3.00218 3.11235 3.37835 3.40380 3.51683 3.56970 4.15189 4.21506 4.38623 4.55031 4.55678 4.57132 4.60630 4.69295 4.88429 4.96489 5.07878 5.09821 5.11760 5.17477 5.25291 5.31974 5.33914 5.40064 5.42819 5.51609 5.63152 5.69536 5.81733 5.92334 5.93557 6.16833 6.18926 6.31739 6.46395 6.55291 6.58449 6.70971 6.74399 6.77888 6.90362 6.96063 7.00664 7.63206 7.89957 8.14581 8.42654 8.46068 9.00318 9.75034 10.19991 11.24615 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.003174 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.517550 B = 8818.464274 C = 9558.249087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.501 3.499 3 O -0.493 6.493 4 N -0.611 5.611 5 C 0.073 3.927 6 C 0.043 3.957 7 O -0.374 6.374 8 C 0.062 3.938 9 C 0.087 3.913 10 H 0.100 0.900 11 C 0.537 3.463 12 O -0.523 6.523 13 N -0.605 5.605 14 C 0.076 3.924 15 C 0.155 3.845 16 C -0.135 4.135 17 C 0.127 3.873 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.080 0.920 21 C 0.030 3.970 22 N -0.915 5.915 23 Si 0.894 3.106 24 H -0.287 1.287 25 H -0.304 1.304 26 H -0.266 1.266 27 C 0.152 3.848 28 C -0.141 4.141 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.028 0.972 45 H 0.070 0.930 46 H 0.263 0.737 47 H 0.024 0.976 48 H 0.066 0.934 49 H 0.055 0.945 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.942 -25.887 -7.324 30.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.290 3.710 3 O -0.366 6.366 4 N -0.350 5.350 5 C -0.050 4.050 6 C -0.034 4.034 7 O -0.291 6.291 8 C -0.016 4.016 9 C -0.020 4.020 10 H 0.117 0.883 11 C 0.324 3.676 12 O -0.398 6.398 13 N -0.339 5.339 14 C -0.068 4.068 15 C 0.053 3.947 16 C -0.175 4.175 17 C 0.001 3.999 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.098 0.902 21 C -0.169 4.169 22 N -0.558 5.558 23 Si 0.725 3.275 24 H -0.214 1.214 25 H -0.232 1.232 26 H -0.191 1.191 27 C 0.026 3.974 28 C -0.181 4.181 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.601 -24.941 -7.758 29.449 hybrid contribution -1.161 0.481 -0.120 1.262 sum -14.761 -24.460 -7.878 29.635 Atomic orbital electron populations 1.21958 0.91268 1.04753 1.04975 1.20983 0.90829 0.83098 0.76123 1.90900 1.68452 1.30394 1.46832 1.48107 1.04857 1.06579 1.75507 1.22575 0.97631 0.84181 1.00624 1.23038 0.81873 1.01267 0.97249 1.87988 1.19776 1.28565 1.92802 1.22849 0.97623 0.83647 0.97476 1.22053 0.81813 0.96370 1.01803 0.88281 1.19460 0.77667 0.86320 0.84191 1.90673 1.57163 1.63472 1.28519 1.47862 1.56199 1.13545 1.16255 1.21764 1.01889 0.95500 0.87618 1.21007 0.93908 0.78952 1.00816 1.22312 0.99342 0.97803 0.98049 1.21386 0.85616 0.93441 0.99436 1.44310 1.00215 1.50166 1.38595 1.18843 1.08367 0.92895 1.19107 0.90199 1.25572 0.98190 0.95581 0.97591 1.69751 1.41468 1.10922 1.33626 0.86786 0.82633 0.76764 0.81341 1.21387 1.23195 1.19126 1.20909 0.96544 0.87972 0.92013 1.22403 0.94615 0.99841 1.01248 0.88639 0.88652 0.90124 0.87958 0.90116 0.92256 0.87263 0.91091 0.87188 0.93111 0.91870 0.89981 0.88711 0.92000 0.92485 0.95431 0.91162 0.92735 0.95820 0.91523 0.92617 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.84 36.00 0.35 -0.90 16 2 C 0.50 6.20 7.66 -10.98 -0.08 6.11 16 3 O -0.49 -8.82 12.80 -19.10 -0.24 -9.06 16 4 N -0.61 -6.18 3.02 -166.06 -0.50 -6.69 16 5 C 0.07 0.40 6.52 -3.53 -0.02 0.38 16 6 C 0.04 0.25 6.99 37.31 0.26 0.51 16 7 O -0.37 -3.29 10.74 -35.23 -0.38 -3.67 16 8 C 0.06 0.62 6.24 37.31 0.23 0.85 16 9 C 0.09 0.98 3.12 -68.57 -0.21 0.76 16 10 H 0.10 0.95 5.60 -51.93 -0.29 0.66 16 11 C 0.54 8.42 4.26 -10.98 -0.05 8.37 16 12 O -0.52 -10.34 13.94 -19.10 -0.27 -10.61 16 13 N -0.61 -9.30 2.76 -173.88 -0.48 -9.78 16 14 C 0.08 0.87 8.86 59.85 0.53 1.40 16 15 C 0.16 2.85 2.47 -67.89 -0.17 2.68 16 16 C -0.13 -2.66 5.34 -26.62 -0.14 -2.81 16 17 C 0.13 2.97 4.15 -3.71 -0.02 2.96 16 18 N -0.61 -15.08 2.65 -172.33 -0.46 -15.54 16 19 C -0.26 -7.55 9.99 -15.06 -0.15 -7.70 16 20 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 21 C 0.03 0.90 5.41 -17.43 -0.09 0.81 16 22 N -0.92 -28.65 13.97 55.49 0.78 -27.87 16 23 Si 0.89 23.55 24.36 -169.99 -4.14 19.41 16 24 H -0.29 -7.32 6.69 56.52 0.38 -6.94 16 25 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 26 H -0.27 -6.97 6.26 56.52 0.35 -6.62 16 27 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 28 C -0.14 -2.48 5.32 -26.61 -0.14 -2.62 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.34 5.66 -51.93 -0.29 0.04 16 32 H 0.10 0.31 5.33 -51.93 -0.28 0.03 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 8.14 -51.94 -0.42 -0.05 16 35 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.54 6.40 -51.93 -0.33 0.21 16 40 H 0.08 0.96 6.47 -51.93 -0.34 0.63 16 41 H 0.09 2.02 6.91 -51.93 -0.36 1.66 16 42 H 0.06 1.19 7.72 -51.93 -0.40 0.79 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.03 0.67 6.63 -51.93 -0.34 0.32 16 45 H 0.07 1.75 5.14 -51.93 -0.27 1.48 16 46 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 49 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.06 1.09 6.72 -51.93 -0.35 0.74 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -38.05 373.13 -7.72 -45.77 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.93 Total: -1.56 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 0.27 Total: 13.97 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.66 Total: -59.87 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.89 Total: -23.34 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.14 Total: 19.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.05 -7.72 -45.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006428999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.270 kcal (2) G-P(sol) polarization free energy of solvation -38.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds