Wall clock time and date at job start Sat Apr 11 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 120.00303 * 2 1 4 4 N 1.34783 * 120.00243 * 179.97438 * 2 1 3 5 5 C 1.47149 * 120.97827 * 4.09003 * 4 2 1 6 6 C 1.53298 * 108.38213 * 129.48349 * 5 4 2 7 7 O 1.42958 * 109.21921 * 52.30323 * 6 5 4 8 8 C 1.42958 * 114.17077 * 297.41522 * 7 6 5 9 9 C 1.47149 * 120.98366 * 184.11130 * 4 2 1 10 10 H 1.09001 * 109.71234 * 110.77147 * 9 4 2 11 11 C 1.50703 * 109.68100 * 350.23807 * 9 4 2 12 12 O 1.21281 * 120.00268 * 297.20704 * 11 9 4 13 13 N 1.34776 * 120.00117 * 117.20783 * 11 9 4 14 14 C 1.46509 * 119.99837 * 4.49232 * 13 11 9 15 15 C 1.46498 * 120.00393 * 184.49410 * 13 11 9 16 16 C 1.53037 * 109.46324 * 119.99804 * 15 13 11 17 17 C 1.53186 * 109.31429 * 181.38830 * 16 15 13 18 18 N 1.46929 * 108.77431 * 305.36378 * 17 16 15 19 19 C 1.36938 * 120.62888 * 233.58973 * 18 17 16 20 20 H 1.08004 * 120.00078 * 139.43847 * 19 18 17 21 21 C 1.38812 * 119.99951 * 319.42531 * 19 18 17 22 22 N 1.31622 * 119.99936 * 174.59534 * 21 19 18 23 23 Si 1.86794 * 120.00132 * 354.60559 * 21 19 18 24 24 H 1.48498 * 109.47333 * 87.23830 * 23 21 19 25 25 H 1.48505 * 109.47019 * 207.23916 * 23 21 19 26 26 H 1.48498 * 109.47169 * 327.23665 * 23 21 19 27 27 C 1.46925 * 118.73873 * 53.60945 * 18 17 16 28 28 C 1.53044 * 109.45959 * 240.06854 * 15 13 11 29 29 H 1.08995 * 109.47626 * 272.97408 * 1 2 3 30 30 H 1.09004 * 109.46782 * 32.97475 * 1 2 3 31 31 H 1.09000 * 109.46887 * 152.97007 * 1 2 3 32 32 H 1.09001 * 109.68109 * 9.76021 * 5 4 2 33 33 H 1.08997 * 109.68440 * 249.20563 * 5 4 2 34 34 H 1.08989 * 109.51480 * 292.37506 * 6 5 4 35 35 H 1.09003 * 109.50951 * 172.22336 * 6 5 4 36 36 H 1.09003 * 109.50987 * 302.66079 * 8 7 6 37 37 H 1.08996 * 109.55660 * 182.53429 * 8 7 6 38 38 H 1.09002 * 109.46833 * 274.94032 * 14 13 11 39 39 H 1.09003 * 109.46933 * 34.93979 * 14 13 11 40 40 H 1.08994 * 109.47285 * 154.94152 * 14 13 11 41 41 H 1.09000 * 109.44741 * 0.03004 * 15 13 11 42 42 H 1.09006 * 109.49547 * 61.43086 * 16 15 13 43 43 H 1.08997 * 109.49801 * 301.34198 * 16 15 13 44 44 H 1.08991 * 109.59128 * 65.15475 * 17 16 15 45 45 H 1.08999 * 109.58608 * 185.43930 * 17 16 15 46 46 H 0.96996 * 119.99860 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.58986 * 66.17850 * 27 18 17 48 48 H 1.09004 * 109.58770 * 186.60657 * 27 18 17 49 49 H 1.08995 * 109.49844 * 58.65799 * 28 15 13 50 50 H 1.08999 * 109.52058 * 298.58068 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4699 -2.4524 -0.0889 6 6 2.1135 -3.2844 -1.2041 7 8 3.5245 -3.3534 -0.9852 8 6 4.1868 -2.0873 -1.0329 9 6 3.6494 -1.1940 0.0910 10 1 3.9509 -1.5983 1.0573 11 6 4.1932 0.2026 -0.0668 12 8 4.0196 0.8074 -1.1036 13 7 4.8724 0.7796 0.9443 14 6 5.1674 0.0151 2.1587 15 6 5.3155 2.1711 0.8290 16 6 4.6867 3.0011 1.9504 17 6 5.1246 4.4620 1.8062 18 7 6.5925 4.5140 1.7674 19 6 7.2851 5.3213 2.6298 20 1 8.1972 4.9667 3.0868 21 6 6.8150 6.5956 2.9164 22 7 7.4201 7.3314 3.8246 23 14 5.3234 7.2659 2.0135 24 1 4.0873 6.8555 2.7267 25 1 5.3985 8.7483 1.9660 26 1 5.2988 6.7270 0.6300 27 6 7.3031 3.6836 0.7854 28 6 6.8407 2.2314 0.9411 29 1 -0.3634 0.0533 1.0262 30 1 -0.3633 0.8622 -0.5594 31 1 -0.3633 -0.9154 -0.4670 32 1 0.4199 -2.2756 -0.3221 33 1 1.5514 -2.9838 0.8593 34 1 1.9170 -2.8152 -2.1680 35 1 1.6942 -4.2905 -1.1958 36 1 3.9979 -1.6137 -1.9963 37 1 5.2592 -2.2315 -0.9021 38 1 4.3170 0.0703 2.8384 39 1 5.3555 -1.0260 1.8960 40 1 6.0491 0.4320 2.6453 41 1 5.0063 2.5717 -0.1365 42 1 5.0153 2.6163 2.9159 43 1 3.6005 2.9387 1.8840 44 1 4.7198 4.8754 0.8826 45 1 4.7589 5.0386 2.6558 46 1 7.0914 8.2217 4.0251 47 1 7.0759 4.0334 -0.2216 48 1 8.3768 3.7461 0.9627 49 1 7.2876 1.6212 0.1563 50 1 7.1495 1.8537 1.9158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006428999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:41 Heat of formation + Delta-G solvation = -85.052548 kcal Electronic energy + Delta-G solvation = -32173.757738 eV Core-core repulsion = 28008.992892 eV Total energy + Delta-G solvation = -4164.764846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.21529 -40.47654 -39.35805 -38.94745 -36.58867 -35.94599 -34.47731 -33.27634 -32.01749 -31.90943 -30.80681 -28.65384 -27.98190 -27.05866 -25.62711 -24.41546 -23.70936 -23.21373 -21.67908 -20.64604 -19.72932 -18.90553 -18.55563 -18.09972 -17.82713 -17.40752 -16.90895 -16.70918 -16.44681 -16.08124 -15.98359 -15.80143 -15.71414 -15.42125 -14.91539 -14.75502 -14.62597 -14.54391 -14.43603 -14.09744 -13.90857 -13.69513 -13.46850 -13.36077 -13.19707 -13.05167 -12.95891 -12.72825 -12.53207 -12.40006 -12.22782 -12.03617 -11.99480 -11.76544 -11.56931 -11.40797 -11.35793 -10.86022 -10.74478 -10.52403 -9.77038 -9.50373 -8.80066 -8.21503 -5.71265 1.25046 1.32147 1.34820 1.44421 1.53250 1.93760 2.12390 2.35642 2.74665 3.08381 3.22602 3.34911 3.51457 3.71907 3.76496 3.83423 3.93786 3.99594 4.04618 4.17099 4.18442 4.24444 4.27185 4.32701 4.42987 4.47546 4.51956 4.58007 4.60766 4.62423 4.64935 4.74575 4.81263 4.86317 4.88843 4.90250 5.02115 5.03575 5.07471 5.09848 5.21762 5.37246 5.59263 5.92307 5.95358 6.13208 6.21889 6.46968 6.88849 7.03913 7.33323 7.53205 8.02445 8.97149 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.003174 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.517550 B = 8818.464274 C = 9558.249087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.487 3.513 3 O -0.559 6.559 4 N -0.610 5.610 5 C 0.069 3.931 6 C 0.036 3.964 7 O -0.379 6.379 8 C 0.070 3.930 9 C 0.090 3.910 10 H 0.123 0.877 11 C 0.533 3.467 12 O -0.572 6.572 13 N -0.608 5.608 14 C 0.070 3.930 15 C 0.165 3.835 16 C -0.118 4.118 17 C 0.126 3.874 18 N -0.619 5.619 19 C -0.251 4.251 20 H 0.054 0.946 21 C -0.020 4.020 22 N -0.956 5.956 23 Si 0.948 3.052 24 H -0.275 1.275 25 H -0.305 1.305 26 H -0.268 1.268 27 C 0.147 3.853 28 C -0.124 4.124 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.144 0.856 36 H 0.046 0.954 37 H 0.123 0.877 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.018 0.982 45 H 0.054 0.946 46 H 0.264 0.736 47 H 0.022 0.978 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.865 -29.733 -7.325 34.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.278 3.722 3 O -0.437 6.437 4 N -0.348 5.348 5 C -0.051 4.051 6 C -0.041 4.041 7 O -0.297 6.297 8 C -0.008 4.008 9 C -0.017 4.017 10 H 0.141 0.859 11 C 0.322 3.678 12 O -0.451 6.451 13 N -0.340 5.340 14 C -0.071 4.071 15 C 0.061 3.939 16 C -0.159 4.159 17 C 0.001 3.999 18 N -0.345 5.345 19 C -0.381 4.381 20 H 0.072 0.928 21 C -0.216 4.216 22 N -0.601 5.601 23 Si 0.777 3.223 24 H -0.201 1.201 25 H -0.233 1.233 26 H -0.193 1.193 27 C 0.021 3.979 28 C -0.164 4.164 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.161 0.839 36 H 0.065 0.935 37 H 0.141 0.859 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.554 -28.899 -7.757 33.723 hybrid contribution -0.568 1.548 -0.154 1.656 sum -16.122 -27.350 -7.911 32.719 Atomic orbital electron populations 1.21975 0.87549 1.06198 1.06291 1.21908 0.92757 0.82686 0.74849 1.90871 1.69955 1.32794 1.50109 1.48330 1.04470 1.07822 1.74191 1.22945 0.98642 0.81914 1.01609 1.23339 0.80448 1.03281 0.97028 1.87991 1.21485 1.27466 1.92725 1.22713 0.98559 0.83831 0.95707 1.22047 0.82856 0.93368 1.03426 0.85937 1.20175 0.76630 0.87741 0.83222 1.90640 1.58666 1.65188 1.30573 1.47848 1.56146 1.12382 1.17671 1.22018 1.02069 0.96933 0.86125 1.20598 0.94114 0.80915 0.98300 1.22085 0.99120 0.95570 0.99075 1.21313 0.84752 0.95706 0.98141 1.44415 1.00814 1.50296 1.38929 1.18782 1.07452 0.93171 1.18660 0.92798 1.26144 1.00903 0.96056 0.98518 1.69860 1.43402 1.11457 1.35401 0.85910 0.80335 0.75867 0.80181 1.20143 1.23306 1.19252 1.21064 0.96462 0.89486 0.90851 1.22203 0.94059 0.97503 1.02611 0.86931 0.89752 0.86417 0.85022 0.88022 0.93007 0.83850 0.93533 0.85946 0.92568 0.88290 0.89997 0.92112 0.91153 0.92804 0.96395 0.92824 0.92714 0.96020 0.91350 0.90454 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.84 71.23 0.70 -1.26 16 2 C 0.49 11.42 7.66 87.65 0.67 12.10 16 3 O -0.56 -20.34 12.80 20.54 0.26 -20.08 16 4 N -0.61 -10.81 3.02 -797.67 -2.41 -13.22 16 5 C 0.07 0.47 6.52 86.36 0.56 1.03 16 6 C 0.04 0.28 6.99 72.08 0.50 0.79 16 7 O -0.38 -5.48 10.74 -148.98 -1.60 -7.08 16 8 C 0.07 1.26 6.24 72.08 0.45 1.71 16 9 C 0.09 1.83 3.12 44.22 0.14 1.97 16 10 H 0.12 1.89 5.60 -2.39 -0.01 1.87 16 11 C 0.53 16.42 4.26 87.66 0.37 16.80 16 12 O -0.57 -23.29 13.94 20.54 0.29 -23.01 16 13 N -0.61 -17.98 2.76 -822.42 -2.27 -20.25 16 14 C 0.07 1.43 8.86 127.77 1.13 2.56 16 15 C 0.16 6.01 2.47 45.02 0.11 6.13 16 16 C -0.12 -4.67 5.34 30.67 0.16 -4.51 16 17 C 0.13 5.96 4.15 86.36 0.36 6.32 16 18 N -0.62 -30.98 2.65 -699.11 -1.85 -32.83 16 19 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 20 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 21 C -0.02 -1.23 5.41 84.86 0.46 -0.77 16 22 N -0.96 -61.21 13.97 21.65 0.30 -60.91 16 23 Si 0.95 49.65 24.36 68.60 1.67 51.32 16 24 H -0.28 -13.75 6.69 99.48 0.67 -13.09 16 25 H -0.30 -15.89 7.11 99.48 0.71 -15.19 16 26 H -0.27 -13.92 6.26 99.48 0.62 -13.30 16 27 C 0.15 6.15 6.52 86.36 0.56 6.71 16 28 C -0.12 -4.23 5.32 30.67 0.16 -4.06 16 29 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.12 0.47 5.66 -2.39 -0.01 0.46 16 32 H 0.13 0.10 5.33 -2.39 -0.01 0.08 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.05 1.06 7.85 -2.39 -0.02 1.05 16 37 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 1.29 6.40 -2.39 -0.02 1.28 16 40 H 0.08 1.69 6.47 -2.39 -0.02 1.67 16 41 H 0.06 2.67 6.91 -2.39 -0.02 2.66 16 42 H 0.07 2.64 7.72 -2.38 -0.02 2.62 16 43 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 44 H 0.02 0.89 6.63 -2.39 -0.02 0.87 16 45 H 0.05 2.69 5.14 -2.39 -0.01 2.68 16 46 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 48 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 49 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.07 2.40 6.72 -2.39 -0.02 2.38 16 Total: -1.00 -87.84 373.13 2.40 -85.43 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.82 Total: 8.93 kcal Atomic # 6 Polarization: 24.50 SS G_CDS: 7.19 Total: 31.68 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -6.23 Total: -127.21 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -1.05 Total: -50.17 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.67 Total: 51.32 kcal Total: -87.84 2.40 -85.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006428999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.382 kcal (2) G-P(sol) polarization free energy of solvation -87.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds