Wall clock time and date at job start Sat Apr 11 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42902 * 114.00286 * 2 1 4 4 H 1.09006 * 110.88179 * 29.30370 * 3 2 1 5 5 C 1.55156 * 111.00595 * 153.17930 * 3 2 1 6 6 C 1.54366 * 102.92065 * 153.55311 * 5 3 2 7 7 H 1.09006 * 109.89988 * 218.42867 * 6 5 3 8 8 C 1.50696 * 109.98017 * 97.33991 * 6 5 3 9 9 O 1.21280 * 120.00253 * 260.66377 * 8 6 5 10 10 N 1.34771 * 119.99818 * 80.66106 * 8 6 5 11 11 C 1.46506 * 120.00134 * 180.02562 * 10 8 6 12 12 H 1.09003 * 109.49375 * 324.99721 * 11 10 8 13 13 C 1.53044 * 109.49852 * 204.93706 * 11 10 8 14 14 C 1.53039 * 109.53576 * 178.71246 * 13 11 10 15 15 C 1.53196 * 109.33860 * 61.31913 * 14 13 11 16 16 N 1.46926 * 108.77156 * 305.37502 * 15 14 13 17 17 C 1.36942 * 120.63020 * 233.58713 * 16 15 14 18 18 H 1.08000 * 119.99796 * 27.69172 * 17 16 15 19 19 C 1.38816 * 120.00017 * 207.69523 * 17 16 15 20 20 N 1.31622 * 119.99729 * 17.36521 * 19 17 16 21 21 Si 1.86798 * 120.00068 * 197.36847 * 19 17 16 22 22 H 1.48504 * 109.47088 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47386 * 119.99951 * 21 19 17 24 24 H 1.48502 * 109.47099 * 240.00156 * 21 19 17 25 25 C 1.46931 * 118.74032 * 53.61410 * 16 15 14 26 26 N 1.47023 * 107.28882 * 337.85695 * 6 5 3 27 27 C 1.34778 * 125.65340 * 178.87375 * 26 6 5 28 28 C 1.50693 * 120.00040 * 180.02562 * 27 26 6 29 29 O 1.21279 * 119.99428 * 0.02562 * 27 26 6 30 30 C 1.47426 * 108.70025 * 358.91366 * 26 6 5 31 31 H 1.08999 * 109.47367 * 60.00086 * 1 2 3 32 32 H 1.09007 * 109.47140 * 299.99746 * 1 2 3 33 33 H 1.09007 * 109.47307 * 179.97438 * 1 2 3 34 34 H 1.09007 * 110.72041 * 271.94017 * 5 3 2 35 35 H 1.08999 * 110.72067 * 35.21729 * 5 3 2 36 36 H 0.97003 * 120.00389 * 0.02562 * 10 8 6 37 37 H 1.08997 * 109.45692 * 298.69720 * 13 11 10 38 38 H 1.09001 * 109.45990 * 58.66302 * 13 11 10 39 39 H 1.09000 * 109.47479 * 301.36499 * 14 13 11 40 40 H 1.09002 * 109.51984 * 181.29568 * 14 13 11 41 41 H 1.09001 * 109.58745 * 185.59354 * 15 14 13 42 42 H 1.08990 * 109.70622 * 65.23466 * 15 14 13 43 43 H 0.97004 * 119.99703 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58359 * 186.60309 * 25 16 15 45 45 H 1.08994 * 109.70180 * 66.24546 * 25 16 15 46 46 H 1.08996 * 109.47815 * 0.02562 * 28 27 26 47 47 H 1.09009 * 109.47189 * 120.00005 * 28 27 26 48 48 H 1.09003 * 109.47343 * 239.99630 * 28 27 26 49 49 H 1.09004 * 110.36573 * 265.28346 * 30 26 6 50 50 H 1.09003 * 110.36616 * 142.96780 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3569 2.0217 0.4985 5 6 3.4173 1.2877 0.6535 6 6 4.1244 2.4849 -0.0170 7 1 5.1674 2.2368 -0.2142 8 6 4.0460 3.6957 0.8768 9 8 3.2086 4.5485 0.6706 10 7 4.9064 3.8309 1.9053 11 6 4.8298 5.0077 2.7745 12 1 4.5417 5.8777 2.1844 13 6 6.1957 5.2569 3.4184 14 6 6.1251 6.5048 4.3016 15 6 5.0982 6.2801 5.4160 16 7 3.8165 5.8981 4.8079 17 6 2.6697 6.5837 5.1085 18 1 2.7225 7.6216 5.4024 19 6 1.4396 5.9446 5.0354 20 7 1.3812 4.6298 5.0178 21 14 -0.1327 6.9505 4.9622 22 1 0.2029 8.3967 4.9967 23 1 -0.8605 6.6406 3.7055 24 1 -0.9903 6.6139 6.1268 25 6 3.7882 4.7661 3.8715 26 7 3.4260 2.7518 -1.2829 27 6 3.7268 3.7355 -2.1538 28 6 2.9227 3.8940 -3.4184 29 8 4.6445 4.4929 -1.9196 30 6 2.3416 1.7658 -1.4415 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 3.3440 1.4364 1.7309 35 1 3.9365 0.3567 0.4260 36 1 5.5764 3.1491 2.0701 37 1 6.4722 4.3965 4.0278 38 1 6.9430 5.4050 2.6389 39 1 5.8250 7.3610 3.6975 40 1 7.1039 6.6952 4.7418 41 1 4.9719 7.1998 5.9873 42 1 5.4410 5.4839 6.0766 43 1 0.5216 4.1832 4.9671 44 1 2.7976 4.6869 3.4238 45 1 4.0240 3.8440 4.4026 46 1 2.1472 3.1290 -3.4543 47 1 2.4599 4.8809 -3.4334 48 1 3.5791 3.7874 -4.2821 49 1 2.6815 0.9211 -2.0408 50 1 1.4697 2.2314 -1.9009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008060670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:50 Heat of formation + Delta-G solvation = -83.525509 kcal Electronic energy + Delta-G solvation = -31755.960799 eV Core-core repulsion = 27591.262170 eV Total energy + Delta-G solvation = -4164.698629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.75558 -38.85497 -38.36770 -37.21969 -36.06894 -34.05774 -32.69516 -31.96347 -30.09267 -29.82085 -29.24658 -28.11254 -26.67941 -25.24692 -24.02417 -22.38060 -22.08076 -21.50572 -20.24409 -19.54621 -18.93311 -17.59161 -17.31708 -16.74077 -16.39305 -15.94533 -15.33795 -15.20788 -15.04933 -14.85100 -14.58866 -14.35774 -14.02188 -13.71131 -13.52081 -13.30167 -13.09629 -12.98800 -12.95340 -12.78922 -12.44405 -12.28059 -12.16973 -12.07284 -11.82919 -11.82032 -11.50803 -11.00619 -10.98942 -10.73610 -10.69452 -10.43824 -10.20779 -10.07808 -9.95688 -9.91638 -9.75580 -9.52368 -9.46596 -8.65247 -8.46300 -8.41861 -6.63946 -5.75130 -3.17338 2.52158 2.75541 3.09121 3.41174 3.48907 3.50061 3.51359 3.65607 4.19751 4.31732 4.54249 4.71950 4.83776 4.94575 4.98079 5.06955 5.12445 5.18114 5.25469 5.29502 5.37744 5.39635 5.43914 5.51453 5.53008 5.58551 5.66607 5.67113 5.68072 5.73798 5.79181 6.05508 6.13775 6.20669 6.37411 6.46532 6.55481 6.74522 6.81842 6.91662 6.98904 7.01663 7.32718 7.38724 7.74009 7.84227 7.97926 8.15633 8.49036 8.72225 9.24287 9.88446 10.43363 11.32857 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.004181 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.586783 B = 6696.073059 C = 7929.829987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.075 3.925 4 H 0.089 0.911 5 C -0.117 4.117 6 C 0.120 3.880 7 H 0.099 0.901 8 C 0.508 3.492 9 O -0.519 6.519 10 N -0.718 5.718 11 C 0.119 3.881 12 H 0.080 0.920 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.143 3.857 16 N -0.589 5.589 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.006 3.994 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.169 3.831 26 N -0.599 5.599 27 C 0.534 3.466 28 C -0.167 4.167 29 O -0.533 6.533 30 C 0.083 3.917 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.391 0.609 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.251 0.749 44 H 0.093 0.907 45 H 0.016 0.984 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.082 0.918 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -11.236 -13.601 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.291 6.291 3 C 0.016 3.984 4 H 0.107 0.893 5 C -0.155 4.155 6 C 0.013 3.987 7 H 0.116 0.884 8 C 0.291 3.709 9 O -0.393 6.393 10 N -0.369 5.369 11 C 0.014 3.986 12 H 0.098 0.902 13 C -0.154 4.154 14 C -0.171 4.171 15 C 0.016 3.984 16 N -0.312 5.312 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.544 5.544 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.042 3.958 26 N -0.336 5.336 27 C 0.323 3.677 28 C -0.226 4.226 29 O -0.409 6.409 30 C -0.040 4.040 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.224 0.776 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.061 0.939 44 H 0.111 0.889 45 H 0.034 0.966 46 H 0.094 0.906 47 H 0.115 0.885 48 H 0.112 0.888 49 H 0.100 0.900 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.876 -10.362 -13.690 17.601 hybrid contribution -0.784 0.257 0.038 0.825 sum 3.092 -10.105 -13.652 17.264 Atomic orbital electron populations 1.22870 0.80456 1.02930 1.00620 1.87876 1.20220 1.26246 1.94766 1.23263 0.95271 0.85545 0.94288 0.89271 1.22696 0.94365 0.96906 1.01534 1.21519 0.98596 0.93820 0.84811 0.88366 1.20471 0.81749 0.87567 0.81135 1.90726 1.35528 1.42182 1.70871 1.45994 1.35411 1.25084 1.30419 1.21948 0.96970 0.87384 0.92328 0.90186 1.21668 0.96204 0.98962 0.98546 1.21998 0.99208 0.97182 0.98678 1.20954 0.86675 0.98011 0.92732 1.43980 1.03306 1.36448 1.47452 1.19210 0.84102 0.92833 1.42063 0.91579 1.25003 0.98115 0.95302 1.00889 1.70041 1.23888 1.06716 1.53779 0.86253 0.83661 0.79857 0.77206 1.20180 1.21552 1.21754 1.21067 0.98068 0.88868 0.87835 1.48130 1.33814 1.31752 1.19888 1.20442 0.84384 0.78349 0.84478 1.21863 1.00798 1.04815 0.95153 1.90743 1.31296 1.42156 1.76700 1.22775 0.90596 0.92133 0.98535 0.93899 0.93277 0.89372 0.88292 0.88354 0.77606 0.92277 0.93055 0.92153 0.92628 0.92672 0.96373 0.93872 0.88863 0.96567 0.90560 0.88524 0.88773 0.89999 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.87 101.05 1.10 1.34 16 2 O -0.37 -4.09 10.51 -35.23 -0.37 -4.46 16 3 C 0.08 0.88 3.51 -24.59 -0.09 0.79 16 4 H 0.09 1.24 7.86 -51.93 -0.41 0.83 16 5 C -0.12 -1.34 6.23 -24.87 -0.15 -1.49 16 6 C 0.12 1.65 3.29 -68.08 -0.22 1.43 16 7 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 8 C 0.51 9.37 6.15 -10.99 -0.07 9.30 16 9 O -0.52 -12.15 15.62 5.56 0.09 -12.07 16 10 N -0.72 -12.34 5.08 -53.69 -0.27 -12.61 16 11 C 0.12 2.44 2.60 -67.81 -0.18 2.26 16 12 H 0.08 1.93 7.58 -51.93 -0.39 1.53 16 13 C -0.12 -1.97 5.36 -26.69 -0.14 -2.12 16 14 C -0.13 -2.32 6.08 -26.61 -0.16 -2.49 16 15 C 0.14 3.03 6.52 -3.71 -0.02 3.01 16 16 N -0.59 -15.25 3.00 -172.32 -0.52 -15.77 16 17 C -0.25 -7.20 9.59 -15.06 -0.14 -7.35 16 18 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 19 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 20 N -0.90 -26.73 11.19 55.49 0.62 -26.11 16 21 Si 0.90 22.68 29.59 -169.99 -5.03 17.65 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C 0.17 4.16 4.89 -3.71 -0.02 4.15 16 26 N -0.60 -8.08 2.79 -164.30 -0.46 -8.54 16 27 C 0.53 7.99 7.30 -10.99 -0.08 7.91 16 28 C -0.17 -1.65 10.19 36.00 0.37 -1.28 16 29 O -0.53 -10.39 16.71 5.56 0.09 -10.30 16 30 C 0.08 0.85 6.13 -2.53 -0.02 0.83 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.46 8.11 -51.92 -0.42 0.04 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.25 7.83 -51.93 -0.41 0.84 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.39 5.21 8.60 -40.82 -0.35 4.86 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.09 2.70 6.04 -51.93 -0.31 2.38 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.56 6.08 -51.93 -0.32 0.24 16 47 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 0.72 6.94 -51.93 -0.36 0.36 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -37.36 398.43 -8.19 -45.55 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -8.43 Total: 4.28 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 0.08 Total: 16.37 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.63 Total: -63.03 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.19 Total: -26.82 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.36 -8.19 -45.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008060670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.978 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds