Wall clock time and date at job start Sat Apr 11 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42902 * 114.00286 * 2 1 4 4 H 1.09006 * 110.88179 * 29.30370 * 3 2 1 5 5 C 1.55156 * 111.00595 * 153.17930 * 3 2 1 6 6 C 1.54366 * 102.92065 * 153.55311 * 5 3 2 7 7 H 1.09006 * 109.89988 * 218.42867 * 6 5 3 8 8 C 1.50696 * 109.98017 * 97.33991 * 6 5 3 9 9 O 1.21280 * 120.00253 * 260.66377 * 8 6 5 10 10 N 1.34771 * 119.99818 * 80.66106 * 8 6 5 11 11 C 1.46506 * 120.00134 * 180.02562 * 10 8 6 12 12 H 1.09003 * 109.49375 * 324.99721 * 11 10 8 13 13 C 1.53044 * 109.49852 * 204.93706 * 11 10 8 14 14 C 1.53039 * 109.53576 * 178.71246 * 13 11 10 15 15 C 1.53196 * 109.33860 * 61.31913 * 14 13 11 16 16 N 1.46926 * 108.77156 * 305.37502 * 15 14 13 17 17 C 1.36942 * 120.63020 * 233.58713 * 16 15 14 18 18 H 1.08000 * 119.99796 * 27.69172 * 17 16 15 19 19 C 1.38816 * 120.00017 * 207.69523 * 17 16 15 20 20 N 1.31622 * 119.99729 * 17.36521 * 19 17 16 21 21 Si 1.86798 * 120.00068 * 197.36847 * 19 17 16 22 22 H 1.48504 * 109.47088 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47386 * 119.99951 * 21 19 17 24 24 H 1.48502 * 109.47099 * 240.00156 * 21 19 17 25 25 C 1.46931 * 118.74032 * 53.61410 * 16 15 14 26 26 N 1.47023 * 107.28882 * 337.85695 * 6 5 3 27 27 C 1.34778 * 125.65340 * 178.87375 * 26 6 5 28 28 C 1.50693 * 120.00040 * 180.02562 * 27 26 6 29 29 O 1.21279 * 119.99428 * 0.02562 * 27 26 6 30 30 C 1.47426 * 108.70025 * 358.91366 * 26 6 5 31 31 H 1.08999 * 109.47367 * 60.00086 * 1 2 3 32 32 H 1.09007 * 109.47140 * 299.99746 * 1 2 3 33 33 H 1.09007 * 109.47307 * 179.97438 * 1 2 3 34 34 H 1.09007 * 110.72041 * 271.94017 * 5 3 2 35 35 H 1.08999 * 110.72067 * 35.21729 * 5 3 2 36 36 H 0.97003 * 120.00389 * 0.02562 * 10 8 6 37 37 H 1.08997 * 109.45692 * 298.69720 * 13 11 10 38 38 H 1.09001 * 109.45990 * 58.66302 * 13 11 10 39 39 H 1.09000 * 109.47479 * 301.36499 * 14 13 11 40 40 H 1.09002 * 109.51984 * 181.29568 * 14 13 11 41 41 H 1.09001 * 109.58745 * 185.59354 * 15 14 13 42 42 H 1.08990 * 109.70622 * 65.23466 * 15 14 13 43 43 H 0.97004 * 119.99703 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58359 * 186.60309 * 25 16 15 45 45 H 1.08994 * 109.70180 * 66.24546 * 25 16 15 46 46 H 1.08996 * 109.47815 * 0.02562 * 28 27 26 47 47 H 1.09009 * 109.47189 * 120.00005 * 28 27 26 48 48 H 1.09003 * 109.47343 * 239.99630 * 28 27 26 49 49 H 1.09004 * 110.36573 * 265.28346 * 30 26 6 50 50 H 1.09003 * 110.36616 * 142.96780 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3569 2.0217 0.4985 5 6 3.4173 1.2877 0.6535 6 6 4.1244 2.4849 -0.0170 7 1 5.1674 2.2368 -0.2142 8 6 4.0460 3.6957 0.8768 9 8 3.2086 4.5485 0.6706 10 7 4.9064 3.8309 1.9053 11 6 4.8298 5.0077 2.7745 12 1 4.5417 5.8777 2.1844 13 6 6.1957 5.2569 3.4184 14 6 6.1251 6.5048 4.3016 15 6 5.0982 6.2801 5.4160 16 7 3.8165 5.8981 4.8079 17 6 2.6697 6.5837 5.1085 18 1 2.7225 7.6216 5.4024 19 6 1.4396 5.9446 5.0354 20 7 1.3812 4.6298 5.0178 21 14 -0.1327 6.9505 4.9622 22 1 0.2029 8.3967 4.9967 23 1 -0.8605 6.6406 3.7055 24 1 -0.9903 6.6139 6.1268 25 6 3.7882 4.7661 3.8715 26 7 3.4260 2.7518 -1.2829 27 6 3.7268 3.7355 -2.1538 28 6 2.9227 3.8940 -3.4184 29 8 4.6445 4.4929 -1.9196 30 6 2.3416 1.7658 -1.4415 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 3.3440 1.4364 1.7309 35 1 3.9365 0.3567 0.4260 36 1 5.5764 3.1491 2.0701 37 1 6.4722 4.3965 4.0278 38 1 6.9430 5.4050 2.6389 39 1 5.8250 7.3610 3.6975 40 1 7.1039 6.6952 4.7418 41 1 4.9719 7.1998 5.9873 42 1 5.4410 5.4839 6.0766 43 1 0.5216 4.1832 4.9671 44 1 2.7976 4.6869 3.4238 45 1 4.0240 3.8440 4.4026 46 1 2.1472 3.1290 -3.4543 47 1 2.4599 4.8809 -3.4334 48 1 3.5791 3.7874 -4.2821 49 1 2.6815 0.9211 -2.0408 50 1 1.4697 2.2314 -1.9009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008060670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:48 Heat of formation + Delta-G solvation = -112.167577 kcal Electronic energy + Delta-G solvation = -31757.202812 eV Core-core repulsion = 27591.262170 eV Total energy + Delta-G solvation = -4165.940642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.93604 -40.30705 -39.37648 -38.83224 -37.16670 -35.83118 -34.50263 -33.06863 -31.95118 -31.07916 -30.35758 -29.35166 -27.42730 -27.27746 -25.16772 -24.00635 -23.65418 -22.70153 -21.58240 -21.15875 -20.20970 -18.87535 -18.65640 -18.38045 -17.55590 -17.22692 -16.81748 -16.55729 -16.22017 -16.04252 -15.83468 -15.74633 -15.62072 -15.33557 -14.94137 -14.74349 -14.39080 -14.20542 -14.10602 -13.98140 -13.89562 -13.66957 -13.48292 -13.21789 -13.02872 -13.00008 -12.70985 -12.63910 -12.52942 -12.36455 -12.28341 -12.09093 -11.96481 -11.72943 -11.63067 -11.30794 -11.16175 -10.96133 -10.65562 -10.60036 -10.11959 -9.79931 -8.72763 -7.93234 -5.38223 1.36055 1.39965 1.40150 1.49075 1.60175 1.83036 2.23087 2.45489 2.68359 3.22618 3.26546 3.35794 3.59057 3.78964 3.80070 3.92735 3.98856 4.05496 4.09850 4.19325 4.24340 4.35517 4.44403 4.45475 4.53259 4.55388 4.57740 4.58126 4.70599 4.77397 4.78212 4.83624 4.87327 4.88164 4.94069 5.04270 5.05779 5.15559 5.19685 5.29683 5.43427 5.49202 5.58225 5.73916 6.07766 6.32198 6.35144 6.59680 7.05067 7.08238 7.31789 7.81130 8.30336 9.11793 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.004181 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.586783 B = 6696.073059 C = 7929.829987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.376 6.376 3 C 0.075 3.925 4 H 0.054 0.946 5 C -0.109 4.109 6 C 0.124 3.876 7 H 0.124 0.876 8 C 0.498 3.502 9 O -0.578 6.578 10 N -0.707 5.707 11 C 0.133 3.867 12 H 0.037 0.963 13 C -0.107 4.107 14 C -0.122 4.122 15 C 0.136 3.864 16 N -0.611 5.611 17 C -0.266 4.266 18 H 0.066 0.934 19 C -0.047 4.047 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.298 1.298 24 H -0.282 1.282 25 C 0.184 3.816 26 N -0.602 5.602 27 C 0.520 3.480 28 C -0.159 4.159 29 O -0.590 6.590 30 C 0.086 3.914 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.413 0.587 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.248 0.752 44 H 0.043 0.957 45 H 0.004 0.996 46 H 0.105 0.895 47 H 0.092 0.908 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.324 -12.795 -14.913 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.294 6.294 3 C 0.015 3.985 4 H 0.073 0.927 5 C -0.147 4.147 6 C 0.016 3.984 7 H 0.142 0.858 8 C 0.284 3.716 9 O -0.456 6.456 10 N -0.360 5.360 11 C 0.027 3.973 12 H 0.056 0.944 13 C -0.145 4.145 14 C -0.161 4.161 15 C 0.012 3.988 16 N -0.335 5.335 17 C -0.396 4.396 18 H 0.083 0.917 19 C -0.243 4.243 20 N -0.573 5.573 21 Si 0.787 3.213 22 H -0.190 1.190 23 H -0.225 1.225 24 H -0.208 1.208 25 C 0.057 3.943 26 N -0.337 5.337 27 C 0.312 3.688 28 C -0.218 4.218 29 O -0.470 6.470 30 C -0.036 4.036 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.250 0.750 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.022 0.978 46 H 0.124 0.876 47 H 0.110 0.890 48 H 0.134 0.866 49 H 0.133 0.867 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.191 -11.969 -14.987 19.870 hybrid contribution -1.205 0.723 0.502 1.492 sum 3.986 -11.247 -14.485 18.767 Atomic orbital electron populations 1.23050 0.79363 1.04394 1.00656 1.87856 1.21382 1.25309 1.94848 1.23113 0.94772 0.85385 0.95187 0.92736 1.22699 0.94522 0.97226 1.00236 1.21617 1.00576 0.91915 0.84324 0.85823 1.21482 0.80478 0.88311 0.81319 1.90692 1.37825 1.44660 1.72414 1.45843 1.35760 1.24739 1.29623 1.21464 0.98030 0.87049 0.90799 0.94432 1.21638 0.94080 0.99520 0.99232 1.21907 0.99980 0.96898 0.97355 1.21169 0.85540 0.98069 0.94068 1.44264 1.04349 1.36430 1.48426 1.19529 0.85537 0.93155 1.41425 0.91653 1.25737 1.00933 0.96292 1.01361 1.70173 1.24097 1.08008 1.55026 0.85334 0.80182 0.79044 0.76754 1.19046 1.22516 1.20822 1.20735 0.96840 0.88282 0.88445 1.48328 1.34257 1.31949 1.19168 1.21419 0.84041 0.77549 0.85795 1.21911 1.01228 1.05541 0.93145 1.90703 1.33913 1.44170 1.78229 1.22966 0.90367 0.92413 0.97832 0.92299 0.94911 0.87175 0.90074 0.84800 0.75010 0.90142 0.90291 0.93596 0.88290 0.92672 0.95604 0.94341 0.93868 0.97762 0.87621 0.88981 0.86594 0.86682 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.87 113.37 1.23 1.58 16 2 O -0.38 -7.59 10.51 -148.98 -1.57 -9.16 16 3 C 0.07 1.69 3.51 31.98 0.11 1.81 16 4 H 0.05 1.60 7.86 -2.38 -0.02 1.59 16 5 C -0.11 -2.38 6.23 31.80 0.20 -2.18 16 6 C 0.12 3.30 3.29 44.61 0.15 3.45 16 7 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 8 C 0.50 19.02 6.15 87.66 0.54 19.56 16 9 O -0.58 -28.79 15.62 -3.03 -0.05 -28.84 16 10 N -0.71 -24.61 5.08 -442.16 -2.25 -26.86 16 11 C 0.13 5.59 2.60 45.07 0.12 5.71 16 12 H 0.04 1.91 7.58 -2.39 -0.02 1.89 16 13 C -0.11 -3.43 5.36 30.62 0.16 -3.27 16 14 C -0.12 -4.09 6.08 30.67 0.19 -3.91 16 15 C 0.14 5.73 6.52 86.36 0.56 6.29 16 16 N -0.61 -32.55 3.00 -699.10 -2.09 -34.64 16 17 C -0.27 -15.68 9.59 84.03 0.81 -14.88 16 18 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 19 C -0.05 -2.83 4.91 84.86 0.42 -2.42 16 20 N -0.93 -57.61 11.19 21.65 0.24 -57.37 16 21 Si 0.96 48.18 29.59 68.60 2.03 50.21 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 24 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 25 C 0.18 9.50 4.89 86.36 0.42 9.92 16 26 N -0.60 -15.60 2.79 -792.11 -2.21 -17.81 16 27 C 0.52 15.31 7.30 87.65 0.64 15.95 16 28 C -0.16 -2.85 10.19 71.23 0.73 -2.13 16 29 O -0.59 -23.45 16.71 -3.03 -0.05 -23.50 16 30 C 0.09 1.57 6.13 86.85 0.53 2.10 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.03 0.63 8.11 -2.38 -0.02 0.61 16 33 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.08 2.08 7.83 -2.38 -0.02 2.06 16 35 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 10.53 8.60 -92.71 -0.80 9.73 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.04 2.66 6.04 -2.39 -0.01 2.65 16 45 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.11 1.22 6.08 -2.39 -0.01 1.20 16 47 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.10 1.47 6.94 -2.39 -0.02 1.45 16 Total: -1.00 -88.48 398.43 0.99 -87.49 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.14 Total: 22.89 kcal Atomic # 6 Polarization: 30.79 SS G_CDS: 6.80 Total: 37.59 kcal Atomic # 7 Polarization: -130.36 SS G_CDS: -6.31 Total: -136.67 kcal Atomic # 8 Polarization: -59.83 SS G_CDS: -1.66 Total: -61.50 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -88.48 0.99 -87.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008060670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.682 kcal (2) G-P(sol) polarization free energy of solvation -88.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds