Wall clock time and date at job start Sat Apr 11 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99935 * 2 1 4 4 N 1.34771 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.47151 * 120.98358 * 0.02562 * 4 2 1 6 6 C 1.53291 * 108.38651 * 129.48173 * 5 4 2 7 7 O 1.42960 * 109.22209 * 52.30473 * 6 5 4 8 8 C 1.42963 * 114.16634 * 297.41240 * 7 6 5 9 9 H 1.09003 * 109.51204 * 302.66506 * 8 7 6 10 10 C 1.50692 * 109.51540 * 182.50807 * 8 7 6 11 11 O 1.21278 * 120.00263 * 355.00462 * 10 8 7 12 12 N 1.34781 * 120.00198 * 175.00292 * 10 8 7 13 13 C 1.46495 * 120.00106 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46997 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.49956 * 305.05586 * 14 13 12 16 16 C 1.53044 * 109.49613 * 185.00204 * 14 13 12 17 17 C 1.53039 * 109.53986 * 178.68281 * 16 14 13 18 18 C 1.53190 * 109.31587 * 61.35698 * 17 16 14 19 19 N 1.46929 * 108.77774 * 305.36985 * 18 17 16 20 20 C 1.36939 * 120.63187 * 233.60550 * 19 18 17 21 21 H 1.08001 * 119.99800 * 151.82933 * 20 19 18 22 22 C 1.38810 * 119.99802 * 331.82621 * 20 19 18 23 23 N 1.31622 * 120.00446 * 343.07723 * 22 20 19 24 24 Si 1.86800 * 119.99656 * 163.07527 * 22 20 19 25 25 H 1.48506 * 109.47115 * 90.00333 * 24 22 20 26 26 H 1.48504 * 109.47043 * 210.00063 * 24 22 20 27 27 H 1.48495 * 109.47532 * 329.99974 * 24 22 20 28 28 C 1.46927 * 118.73675 * 53.60673 * 19 18 17 29 29 C 1.47155 * 120.98201 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.47177 * 239.99951 * 1 2 3 31 31 H 1.09007 * 109.46924 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47411 * 119.99907 * 1 2 3 33 33 H 1.08997 * 109.68273 * 9.75359 * 5 4 2 34 34 H 1.09005 * 109.67991 * 249.20861 * 5 4 2 35 35 H 1.08999 * 109.51470 * 292.37330 * 6 5 4 36 36 H 1.09010 * 109.55313 * 172.25006 * 6 5 4 37 37 H 0.97000 * 119.99660 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.47010 * 299.99920 * 13 12 10 39 39 H 1.08997 * 109.47381 * 59.99672 * 13 12 10 40 40 H 1.09002 * 109.45501 * 298.69504 * 16 14 13 41 41 H 1.08997 * 109.46421 * 58.66971 * 16 14 13 42 42 H 1.08996 * 109.50285 * 181.31329 * 17 16 14 43 43 H 1.09005 * 109.49253 * 301.41382 * 17 16 14 44 44 H 1.09004 * 109.58649 * 65.15505 * 18 17 16 45 45 H 1.08999 * 109.58813 * 185.57879 * 18 17 16 46 46 H 0.97001 * 120.00105 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.58401 * 186.60654 * 28 19 18 48 48 H 1.08998 * 109.58770 * 66.17897 * 28 19 18 49 49 H 1.09003 * 109.67901 * 350.23641 * 29 4 2 50 50 H 1.08994 * 109.67876 * 110.75387 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4671 -2.4540 0.0005 6 6 2.0418 -3.3257 -1.1218 7 8 3.4637 -3.3885 -0.9878 8 6 4.1205 -2.1257 -1.1210 9 1 3.8721 -1.6863 -2.0872 10 6 5.6115 -2.3210 -1.0240 11 8 6.0642 -3.4164 -0.7670 12 7 6.4422 -1.2783 -1.2228 13 6 7.8917 -1.4684 -1.1290 14 6 8.5987 -0.1378 -1.3948 15 1 8.2734 0.2615 -2.3555 16 6 10.1127 -0.3601 -1.4205 17 6 10.8195 0.9641 -1.7188 18 6 10.4973 1.9713 -0.6105 19 7 9.0379 2.0819 -0.4815 20 6 8.4224 3.3035 -0.5453 21 1 7.4053 3.3778 -0.9009 22 6 9.1057 4.4463 -0.1528 23 7 10.1942 4.3432 0.5800 24 14 8.4803 6.1304 -0.6646 25 1 7.5378 6.6418 0.3628 26 1 9.6265 7.0657 -0.7941 27 1 7.7795 6.0228 -1.9694 28 6 8.2515 0.8569 -0.2828 29 6 3.6522 -1.1924 0.0011 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 0.4046 -2.2844 -0.1738 34 1 1.6072 -2.9515 0.9602 35 1 1.7859 -2.8907 -2.0879 36 1 1.6249 -4.3306 -1.0531 37 1 6.0801 -0.4023 -1.4287 38 1 8.1479 -1.8224 -0.1305 39 1 8.2104 -2.2036 -1.8680 40 1 10.4409 -0.7366 -0.4516 41 1 10.3601 -1.0861 -2.1949 42 1 11.8963 0.8006 -1.7601 43 1 10.4732 1.3536 -2.6762 44 1 10.9223 1.6259 0.3320 45 1 10.9162 2.9442 -0.8678 46 1 10.6719 5.1418 0.8539 47 1 7.1884 1.0944 -0.3239 48 1 8.4933 0.4206 0.6864 49 1 4.0366 -0.1874 -0.1730 50 1 4.0126 -1.5621 0.9610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023728632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:58 Heat of formation + Delta-G solvation = -92.890453 kcal Electronic energy + Delta-G solvation = -30658.381468 eV Core-core repulsion = 26493.276745 eV Total energy + Delta-G solvation = -4165.104723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.91496 -39.62897 -38.41920 -37.65136 -35.21370 -34.77873 -33.16031 -32.37811 -30.47086 -30.39169 -30.18684 -28.12727 -25.65016 -25.26423 -24.64230 -22.97822 -22.08416 -20.98944 -20.47494 -19.69273 -19.07142 -17.80375 -17.19257 -17.14738 -16.58067 -16.46635 -15.94191 -15.51725 -15.48804 -14.97933 -14.80159 -14.63575 -14.14958 -13.95718 -13.91263 -13.55749 -13.42230 -13.24368 -12.99823 -12.78123 -12.55661 -12.44524 -12.33214 -12.20768 -12.15447 -11.95184 -11.32958 -11.26744 -10.99881 -10.68798 -10.63018 -10.49597 -10.23978 -10.20271 -10.17257 -9.94321 -9.82526 -9.55328 -9.42002 -9.03384 -8.96373 -8.45048 -6.65822 -5.77816 -3.20686 2.24634 2.34399 2.63885 2.65544 3.39244 3.46074 3.48424 3.72273 4.14146 4.22173 4.40613 4.49715 4.53501 4.56845 4.72772 4.75240 4.80953 4.95399 5.08290 5.12293 5.13688 5.27603 5.29895 5.43519 5.44371 5.46358 5.50935 5.62179 5.81966 5.88898 5.93081 5.98839 6.22684 6.30790 6.36975 6.43089 6.58242 6.60836 6.70274 6.77443 6.85686 6.92880 6.96210 7.40460 7.47789 7.68130 7.79057 7.80773 8.15919 8.45900 9.22312 9.85538 10.42108 11.30568 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.003189 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.303586 B = 8776.732573 C =11113.570444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.531 6.531 4 N -0.620 5.620 5 C 0.070 3.930 6 C 0.046 3.954 7 O -0.349 6.349 8 C 0.062 3.938 9 H 0.089 0.911 10 C 0.521 3.479 11 O -0.520 6.520 12 N -0.718 5.718 13 C 0.129 3.871 14 C -0.118 4.118 15 H 0.074 0.926 16 C -0.099 4.099 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.153 3.847 29 C 0.087 3.913 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.404 0.596 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.017 0.983 45 H 0.086 0.914 46 H 0.253 0.747 47 H 0.050 0.950 48 H 0.019 0.981 49 H 0.112 0.888 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.920 -15.314 -4.180 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.407 6.407 4 N -0.356 5.356 5 C -0.053 4.053 6 C -0.032 4.032 7 O -0.266 6.266 8 C 0.000 4.000 9 H 0.107 0.893 10 C 0.305 3.695 11 O -0.395 6.395 12 N -0.372 5.372 13 C 0.005 3.995 14 C -0.139 4.139 15 H 0.092 0.908 16 C -0.137 4.137 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.026 3.974 29 C -0.036 4.036 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.240 0.760 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.037 0.963 49 H 0.130 0.870 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.064 -15.541 -3.874 23.404 hybrid contribution -0.666 1.445 -0.326 1.624 sum -17.730 -14.097 -4.200 23.037 Atomic orbital electron populations 1.21944 0.91338 1.05821 1.04077 1.20915 0.90775 0.82765 0.75522 1.90802 1.70563 1.30647 1.48675 1.48180 1.06424 1.06260 1.74712 1.22526 0.97550 0.84297 1.00907 1.23074 0.81416 1.01419 0.97299 1.88117 1.18267 1.27043 1.93194 1.22292 0.91712 0.86265 0.99722 0.89335 1.19795 0.87086 0.84915 0.77735 1.90726 1.77495 1.24698 1.46612 1.46013 1.07525 1.11906 1.71708 1.21510 0.77734 0.98234 1.01983 1.21972 0.95925 0.94098 1.01897 0.90795 1.21338 0.93867 0.97799 1.00733 1.22173 0.98098 0.96343 1.01476 1.20798 0.84080 0.97747 0.93044 1.44031 1.02130 1.01368 1.83787 1.19162 0.98831 0.83579 1.36803 0.91718 1.25032 0.98447 0.98296 0.97717 1.70039 1.19952 1.27932 1.36693 0.86328 0.77804 0.84252 0.78589 1.21347 1.21578 1.20469 1.20905 0.95270 0.87569 0.93615 1.22176 0.80337 1.01904 0.99169 0.89265 0.88661 0.89335 0.88294 0.89961 0.92307 0.86881 0.76032 0.91326 0.91744 0.92435 0.93418 0.93170 0.92753 0.96450 0.89569 0.93651 0.93127 0.96316 0.87014 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 8.69 36.01 0.31 -0.65 16 2 C 0.51 5.34 7.82 -10.99 -0.09 5.26 16 3 O -0.53 -8.28 16.55 5.56 0.09 -8.19 16 4 N -0.62 -5.69 3.02 -172.29 -0.52 -6.21 16 5 C 0.07 0.39 6.54 -3.54 -0.02 0.37 16 6 C 0.05 0.29 6.98 37.31 0.26 0.55 16 7 O -0.35 -3.95 9.92 -55.06 -0.55 -4.49 16 8 C 0.06 0.69 3.19 -27.74 -0.09 0.61 16 9 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 10 C 0.52 7.28 7.18 -10.99 -0.08 7.20 16 11 O -0.52 -9.25 16.51 -14.27 -0.24 -9.48 16 12 N -0.72 -9.44 5.30 -60.30 -0.32 -9.76 16 13 C 0.13 1.85 5.07 -4.05 -0.02 1.82 16 14 C -0.12 -1.92 2.37 -90.50 -0.21 -2.14 16 15 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.10 -1.62 5.17 -26.69 -0.14 -1.75 16 17 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 18 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 19 N -0.59 -14.59 2.99 -172.32 -0.52 -15.10 16 20 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 21 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 22 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 23 N -0.90 -26.27 11.20 55.49 0.62 -25.65 16 24 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.15 3.09 5.60 -3.71 -0.02 3.07 16 29 C 0.09 0.96 5.89 -3.54 -0.02 0.94 16 30 H 0.09 0.32 8.01 -51.93 -0.42 -0.09 16 31 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.09 0.29 7.66 -51.93 -0.40 -0.11 16 33 H 0.10 0.25 6.05 -51.93 -0.31 -0.07 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.40 4.86 7.71 -40.82 -0.31 4.54 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.05 0.99 7.15 -51.93 -0.37 0.61 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.11 1.37 7.08 -51.93 -0.37 1.00 16 50 H 0.08 0.98 8.13 -51.93 -0.42 0.55 16 LS Contribution 394.80 15.07 5.95 5.95 Total: -1.00 -35.97 394.80 -9.42 -45.39 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.39 Total: 1.35 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -0.53 Total: 9.37 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.73 Total: -56.72 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.69 Total: -22.16 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.97 -9.42 -45.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023728632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.503 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds