Wall clock time and date at job start Sat Apr 11 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21271 * 120.00435 * 2 1 4 4 N 1.34775 * 119.99570 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98345 * 0.02562 * 4 2 1 6 6 C 1.53293 * 108.38592 * 129.44117 * 5 4 2 7 7 O 1.42966 * 109.22544 * 52.29907 * 6 5 4 8 8 C 1.42963 * 114.16615 * 297.41882 * 7 6 5 9 9 H 1.08995 * 109.51332 * 302.61024 * 8 7 6 10 10 C 1.50695 * 109.51153 * 182.50359 * 8 7 6 11 11 O 1.21281 * 120.00119 * 355.00085 * 10 8 7 12 12 N 1.34778 * 120.00267 * 175.00257 * 10 8 7 13 13 C 1.46499 * 120.00283 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46885 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.49658 * 54.93619 * 14 13 12 16 16 C 1.53034 * 109.49425 * 175.00281 * 14 13 12 17 17 C 1.53046 * 109.53856 * 181.34989 * 16 14 13 18 18 C 1.53188 * 109.30760 * 298.63191 * 17 16 14 19 19 N 1.46920 * 108.77580 * 54.63833 * 18 17 16 20 20 C 1.36939 * 120.63582 * 126.36663 * 19 18 17 21 21 H 1.07994 * 120.00355 * 209.24286 * 20 19 18 22 22 C 1.38819 * 119.99802 * 29.23928 * 20 19 18 23 23 N 1.31618 * 119.99618 * 24.22768 * 22 20 19 24 24 Si 1.86794 * 119.99848 * 204.22896 * 22 20 19 25 25 H 1.48508 * 109.46947 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47235 * 299.99690 * 24 22 20 27 27 H 1.48497 * 109.47398 * 60.00336 * 24 22 20 28 28 C 1.46931 * 118.73802 * 306.63465 * 19 18 17 29 29 C 1.47152 * 120.98327 * 179.97438 * 4 2 1 30 30 H 1.08993 * 109.47581 * 240.00751 * 1 2 3 31 31 H 1.09000 * 109.46889 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.46670 * 120.00248 * 1 2 3 33 33 H 1.08998 * 109.68273 * 9.71299 * 5 4 2 34 34 H 1.09007 * 109.67734 * 249.16247 * 5 4 2 35 35 H 1.09008 * 109.51194 * 292.37633 * 6 5 4 36 36 H 1.09000 * 109.51436 * 172.22601 * 6 5 4 37 37 H 0.97003 * 119.99585 * 359.97438 * 12 10 8 38 38 H 1.08996 * 109.47242 * 59.99940 * 13 12 10 39 39 H 1.09000 * 109.47205 * 300.00046 * 13 12 10 40 40 H 1.08999 * 109.46845 * 61.32486 * 16 14 13 41 41 H 1.09008 * 109.45332 * 301.36050 * 16 14 13 42 42 H 1.09004 * 109.49599 * 178.68183 * 17 16 14 43 43 H 1.08998 * 109.52068 * 58.60136 * 17 16 14 44 44 H 1.08993 * 109.59025 * 294.84561 * 18 17 16 45 45 H 1.09004 * 109.70226 * 174.48951 * 18 17 16 46 46 H 0.96993 * 120.00353 * 5.77627 * 23 22 20 47 47 H 1.09003 * 109.58722 * 173.14742 * 28 19 18 48 48 H 1.08991 * 109.58659 * 293.57504 * 28 19 18 49 49 H 1.09003 * 109.67985 * 110.83279 * 29 4 2 50 50 H 1.09003 * 109.67736 * 350.28541 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4669 -2.4540 0.0005 6 6 2.0409 -3.3254 -1.1225 7 8 3.4630 -3.3883 -0.9895 8 6 4.1197 -2.1254 -1.1226 9 1 3.8714 -1.6861 -2.0888 10 6 5.6108 -2.3209 -1.0266 11 8 6.0635 -3.4164 -0.7703 12 7 6.4414 -1.2782 -1.2256 13 6 7.8910 -1.4681 -1.1317 14 6 8.5979 -0.1375 -1.3977 15 1 8.2132 0.6213 -0.7162 16 6 10.1029 -0.3059 -1.1778 17 6 10.8072 1.0327 -1.4108 18 6 10.5771 1.4810 -2.8574 19 7 9.1319 1.5057 -3.1207 20 6 8.5316 2.6333 -3.6141 21 1 7.4987 2.8424 -3.3783 22 6 9.2509 3.5076 -4.4173 23 7 10.2942 3.0739 -5.0924 24 14 8.7382 5.2996 -4.5399 25 1 9.6615 6.0172 -5.4553 26 1 7.3532 5.3831 -5.0693 27 1 8.7918 5.9232 -3.1933 28 6 8.3418 0.2994 -2.8389 29 6 3.6521 -1.1926 0.0000 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3632 -0.5139 -0.8900 33 1 0.4043 -2.2843 -0.1731 34 1 1.6078 -2.9519 0.9600 35 1 1.7845 -2.8900 -2.0884 36 1 1.6240 -4.3301 -1.0530 37 1 6.0793 -0.4021 -1.4309 38 1 8.2097 -2.2034 -1.8705 39 1 8.1471 -1.8220 -0.1331 40 1 10.4914 -1.0471 -1.8763 41 1 10.2855 -0.6392 -0.1561 42 1 11.8762 0.9175 -1.2312 43 1 10.4023 1.7808 -0.7292 44 1 11.0607 0.7807 -3.5383 45 1 10.9922 2.4783 -3.0035 46 1 10.5109 2.1285 -5.0957 47 1 7.2820 0.5177 -2.9703 48 1 8.6395 -0.4993 -3.5182 49 1 4.0132 -1.5632 0.9593 50 1 4.0365 -0.1875 -0.1740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023728633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:03 Heat of formation + Delta-G solvation = -96.479673 kcal Electronic energy + Delta-G solvation = -30556.134554 eV Core-core repulsion = 26390.874190 eV Total energy + Delta-G solvation = -4165.260364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.97165 -39.69475 -38.50361 -37.81303 -35.29533 -34.92215 -33.34793 -32.45941 -30.60366 -30.34517 -30.17012 -28.18350 -25.72426 -25.09738 -24.71531 -23.04051 -22.20086 -21.02692 -20.51597 -19.76353 -19.13225 -17.88288 -17.41128 -17.24002 -17.03728 -16.53212 -16.00592 -15.58695 -15.52351 -15.05056 -14.79117 -14.40951 -14.18874 -13.98675 -13.93191 -13.76331 -13.56157 -13.27530 -13.26052 -13.02938 -12.61888 -12.52209 -12.50116 -12.28866 -12.10931 -12.00024 -11.55250 -11.33725 -10.94289 -10.68512 -10.68043 -10.42021 -10.30183 -10.26566 -10.05557 -10.01631 -9.90494 -9.71622 -9.26385 -9.09681 -9.02255 -8.37824 -6.88651 -6.07085 -3.25790 2.17307 2.28767 2.57453 2.62092 3.49791 3.53003 3.67703 3.70861 4.08253 4.17259 4.36064 4.48624 4.52373 4.57644 4.69057 4.71636 4.75956 4.90479 4.97204 5.05717 5.10396 5.21789 5.22245 5.33825 5.36070 5.37298 5.43215 5.51066 5.71175 5.81029 5.84420 5.86482 6.09306 6.18938 6.22074 6.35178 6.46109 6.49598 6.56473 6.65672 6.68289 6.80087 6.85619 7.09294 7.20443 7.42630 7.71073 7.99551 8.11188 8.57457 9.10922 9.83510 10.28658 11.21019 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.002918 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.646950 B = 9594.944525 C =11371.818972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.535 6.535 4 N -0.619 5.619 5 C 0.070 3.930 6 C 0.045 3.955 7 O -0.348 6.348 8 C 0.061 3.939 9 H 0.091 0.909 10 C 0.522 3.478 11 O -0.520 6.520 12 N -0.719 5.719 13 C 0.129 3.871 14 C -0.119 4.119 15 H 0.075 0.925 16 C -0.099 4.099 17 C -0.136 4.136 18 C 0.149 3.851 19 N -0.598 5.598 20 C -0.352 4.352 21 H 0.055 0.945 22 C -0.022 4.022 23 N -0.915 5.915 24 Si 1.064 2.936 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.156 3.844 29 C 0.089 3.911 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.405 0.595 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.077 0.923 46 H 0.269 0.731 47 H 0.051 0.949 48 H 0.017 0.983 49 H 0.083 0.917 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.607 -12.224 11.249 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.410 6.410 4 N -0.355 5.355 5 C -0.053 4.053 6 C -0.033 4.033 7 O -0.266 6.266 8 C -0.001 4.001 9 H 0.109 0.891 10 C 0.305 3.695 11 O -0.395 6.395 12 N -0.372 5.372 13 C 0.006 3.994 14 C -0.139 4.139 15 H 0.093 0.907 16 C -0.138 4.138 17 C -0.176 4.176 18 C 0.023 3.977 19 N -0.321 5.321 20 C -0.481 4.481 21 H 0.072 0.928 22 C -0.225 4.225 23 N -0.555 5.555 24 Si 0.894 3.106 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.220 1.220 28 C 0.029 3.971 29 C -0.035 4.035 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.240 0.760 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.035 0.965 49 H 0.101 0.899 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.455 -11.107 10.792 23.335 hybrid contribution -0.903 -1.006 0.513 1.446 sum -18.358 -12.113 11.305 24.729 Atomic orbital electron populations 1.21945 0.91250 1.05861 1.04151 1.20918 0.90808 0.82712 0.75378 1.90777 1.70618 1.30725 1.48929 1.48187 1.06398 1.06328 1.74632 1.22539 0.97595 0.84221 1.00909 1.23088 0.81374 1.01463 0.97357 1.88120 1.18287 1.26980 1.93193 1.22293 0.91680 0.86301 0.99820 0.89131 1.19797 0.87108 0.84883 0.77689 1.90727 1.77502 1.24600 1.46657 1.46008 1.07459 1.11993 1.71749 1.21491 0.77831 0.98455 1.01625 1.21881 0.95946 0.94922 1.01165 0.90659 1.21335 0.94004 0.98249 1.00167 1.22053 0.98448 0.96370 1.00690 1.20963 0.85356 1.00417 0.90961 1.44074 1.03392 1.09817 1.74855 1.19949 0.98935 1.00666 1.28534 0.92752 1.25860 0.97922 1.05483 0.93197 1.70775 1.30142 1.17755 1.36815 0.83542 0.75309 0.75763 0.76030 1.21086 1.21967 1.22006 1.20807 0.95540 0.89562 0.91171 1.22152 0.80435 1.01791 0.99079 0.89251 0.88636 0.89233 0.88234 0.89968 0.92177 0.86816 0.76013 0.91355 0.91632 0.92414 0.93071 0.92918 0.92350 0.96570 0.90422 0.91998 0.93023 0.96542 0.89893 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 8.69 36.01 0.31 -0.57 16 2 C 0.51 5.04 7.82 -10.99 -0.09 4.95 16 3 O -0.53 -7.85 16.55 5.56 0.09 -7.76 16 4 N -0.62 -5.36 3.02 -172.29 -0.52 -5.88 16 5 C 0.07 0.37 6.54 -3.53 -0.02 0.35 16 6 C 0.04 0.29 6.98 37.31 0.26 0.55 16 7 O -0.35 -3.95 9.92 -55.06 -0.55 -4.50 16 8 C 0.06 0.69 3.19 -27.75 -0.09 0.60 16 9 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 10 C 0.52 7.30 7.18 -10.99 -0.08 7.22 16 11 O -0.52 -9.23 16.51 -14.28 -0.24 -9.46 16 12 N -0.72 -9.50 5.30 -60.30 -0.32 -9.81 16 13 C 0.13 1.85 5.07 -4.04 -0.02 1.83 16 14 C -0.12 -1.93 2.36 -90.72 -0.21 -2.14 16 15 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 17 C -0.14 -2.51 6.08 -26.61 -0.16 -2.68 16 18 C 0.15 3.44 4.70 -3.72 -0.02 3.42 16 19 N -0.60 -14.67 2.84 -172.59 -0.49 -15.16 16 20 C -0.35 -9.71 9.48 -15.06 -0.14 -9.85 16 21 H 0.05 1.50 7.94 -52.49 -0.42 1.09 16 22 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 23 N -0.92 -27.34 12.45 55.49 0.69 -26.65 16 24 Si 1.06 25.23 29.98 -169.99 -5.10 20.14 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.16 3.13 5.58 -3.93 -0.02 3.11 16 29 C 0.09 0.91 5.88 -3.55 -0.02 0.89 16 30 H 0.09 0.27 8.01 -51.93 -0.42 -0.15 16 31 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.09 0.27 7.66 -51.93 -0.40 -0.12 16 33 H 0.10 0.22 6.05 -51.93 -0.31 -0.10 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.40 4.94 7.69 -40.82 -0.31 4.63 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 45 H 0.08 2.02 6.38 -51.93 -0.33 1.69 16 46 H 0.27 8.10 6.71 -40.82 -0.27 7.83 16 47 H 0.05 1.02 7.13 -51.93 -0.37 0.65 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.11 1.24 7.08 -51.93 -0.37 0.87 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -36.45 393.80 -9.34 -45.78 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.32 Total: 2.13 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -0.52 Total: 5.24 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.64 Total: -57.51 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.69 Total: -21.72 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.10 Total: 20.14 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.45 -9.34 -45.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023728633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.697 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds