Wall clock time and date at job start Sat Apr 11 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 119.99946 * 2 1 4 4 N 1.34781 * 120.00017 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98064 * 6.74675 * 4 2 1 6 6 C 1.53293 * 108.38486 * 230.51177 * 5 4 2 7 7 O 1.42959 * 109.22238 * 307.70371 * 6 5 4 8 8 C 1.42964 * 114.17103 * 62.58032 * 7 6 5 9 9 C 1.47148 * 120.98141 * 186.72717 * 4 2 1 10 10 H 1.08995 * 109.68235 * 249.24841 * 9 4 2 11 11 C 1.50705 * 109.68358 * 9.76163 * 9 4 2 12 12 O 1.21282 * 119.99625 * 62.23922 * 11 9 4 13 13 N 1.34770 * 120.00178 * 242.24008 * 11 9 4 14 14 C 1.46498 * 120.00035 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.46972 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.49754 * 304.92851 * 15 14 13 17 17 C 1.53045 * 109.52243 * 184.85009 * 15 14 13 18 18 C 1.53036 * 109.53764 * 178.66603 * 17 15 14 19 19 C 1.52759 * 109.38315 * 61.24031 * 18 17 15 20 20 N 1.46925 * 109.01210 * 305.59053 * 19 18 17 21 21 C 1.36935 * 120.63072 * 233.58899 * 20 19 18 22 22 H 1.07999 * 120.00129 * 28.42460 * 21 20 19 23 23 C 1.38812 * 119.99493 * 208.43946 * 21 20 19 24 24 N 1.31622 * 119.99612 * 198.40751 * 23 21 20 25 25 Si 1.86796 * 120.00645 * 18.40405 * 23 21 20 26 26 H 1.48495 * 109.46981 * 270.00553 * 25 23 21 27 27 H 1.48504 * 109.46806 * 30.00245 * 25 23 21 28 28 H 1.48500 * 109.47495 * 150.00076 * 25 23 21 29 29 C 1.46925 * 118.73608 * 53.30527 * 20 19 18 30 30 H 1.09005 * 109.47222 * 185.69738 * 1 2 3 31 31 H 1.08997 * 109.47491 * 305.69446 * 1 2 3 32 32 H 1.08998 * 109.47266 * 65.69611 * 1 2 3 33 33 H 1.08994 * 109.67957 * 350.23930 * 5 4 2 34 34 H 1.09004 * 109.67800 * 110.75530 * 5 4 2 35 35 H 1.09005 * 109.50687 * 67.62284 * 6 5 4 36 36 H 1.08997 * 109.51452 * 187.72700 * 6 5 4 37 37 H 1.09003 * 109.51325 * 177.49409 * 8 7 6 38 38 H 1.08996 * 109.50926 * 57.34039 * 8 7 6 39 39 H 0.97005 * 119.99678 * 359.97438 * 13 11 9 40 40 H 1.08996 * 109.47145 * 59.99712 * 14 13 11 41 41 H 1.08998 * 109.47123 * 299.99789 * 14 13 11 42 42 H 1.08994 * 109.46223 * 298.68915 * 17 15 14 43 43 H 1.09009 * 109.45626 * 58.66087 * 17 15 14 44 44 H 1.09004 * 109.49667 * 181.31928 * 18 17 15 45 45 H 1.09003 * 109.49582 * 301.38407 * 18 17 15 46 46 H 1.08996 * 109.51282 * 185.70507 * 19 18 17 47 47 H 1.08998 * 109.43243 * 65.42485 * 19 18 17 48 48 H 0.97006 * 120.00063 * 354.89452 * 24 23 21 49 49 H 1.08998 * 109.58824 * 66.43503 * 29 20 19 50 50 H 1.09006 * 109.58596 * 186.86118 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4746 -2.4497 -0.1471 6 6 1.9344 -3.3869 0.9754 7 8 3.3627 -3.4459 0.9839 8 6 3.9987 -2.1949 1.2565 9 6 3.6446 -1.1967 0.1483 10 1 4.1020 -1.5112 -0.7897 11 6 4.1448 0.1749 0.5219 12 8 3.7921 0.6860 1.5638 13 7 4.9840 0.8337 -0.3016 14 6 5.4706 2.1668 0.0619 15 6 6.4010 2.6868 -1.0358 16 1 7.2001 1.9657 -1.2073 17 6 7.0048 4.0249 -0.6029 18 6 7.9611 4.5292 -1.6861 19 6 7.1870 4.7453 -2.9852 20 7 6.4804 3.5050 -3.3333 21 6 6.6395 2.9344 -4.5679 22 1 7.5613 3.0748 -5.1130 23 6 5.6159 2.1758 -5.1189 24 7 5.8722 1.3415 -6.1042 25 14 3.8748 2.3388 -4.4623 26 1 3.6681 1.3648 -3.3606 27 1 3.6660 3.7170 -3.9502 28 1 2.9062 2.0644 -5.5540 29 6 5.6048 2.8852 -2.3294 30 1 -0.3634 -1.0226 0.1020 31 1 -0.3634 0.5996 0.8346 32 1 -0.3634 0.4229 -0.9366 33 1 0.3994 -2.2874 -0.0725 34 1 1.7130 -2.8908 -1.1150 35 1 1.5800 -3.0079 1.9341 36 1 1.5290 -4.3844 0.8059 37 1 5.0792 -2.3351 1.2887 38 1 3.6518 -1.8117 2.2161 39 1 5.2663 0.4247 -1.1347 40 1 6.0164 2.1100 1.0036 41 1 4.6244 2.8447 0.1728 42 1 6.2069 4.7526 -0.4555 43 1 7.5517 3.8914 0.3306 44 1 8.4085 5.4705 -1.3669 45 1 8.7458 3.7908 -1.8511 46 1 7.8814 5.0066 -3.7836 47 1 6.4654 5.5505 -2.8476 48 1 6.7596 1.3102 -6.4948 49 1 4.7515 3.5357 -2.1372 50 1 5.2557 1.9196 -2.6953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023757521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:23 Heat of formation + Delta-G solvation = -107.662334 kcal Electronic energy + Delta-G solvation = -32016.843095 eV Core-core repulsion = 27851.097814 eV Total energy + Delta-G solvation = -4165.745280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.12761 -40.26894 -39.37480 -39.32829 -36.23495 -35.96705 -34.95411 -33.41107 -32.70188 -32.00600 -30.80098 -28.73509 -27.40530 -26.88669 -25.49897 -24.05148 -23.31373 -22.47302 -21.97778 -21.02785 -20.21269 -19.47825 -18.77988 -18.03511 -17.81763 -17.19320 -16.93523 -16.73602 -16.49004 -16.33331 -16.03628 -15.74520 -15.69250 -15.47973 -15.13213 -14.92149 -14.81020 -14.64780 -14.56753 -14.19791 -13.89395 -13.65921 -13.51873 -13.25626 -13.10544 -13.00577 -12.89475 -12.49155 -12.45646 -12.14764 -12.02487 -11.82823 -11.69498 -11.60519 -11.39281 -11.34049 -11.21829 -10.89653 -10.69233 -10.63378 -10.08158 -9.74833 -9.14953 -8.51688 -5.58535 1.28538 1.32004 1.42544 1.52163 1.60607 2.06338 2.08418 2.39285 2.78893 3.02795 3.30025 3.43362 3.56542 3.75462 3.78012 3.82242 3.87907 3.92968 3.94387 4.00420 4.18737 4.23540 4.31899 4.41315 4.44513 4.51612 4.55098 4.57934 4.58477 4.69118 4.73149 4.73820 4.83010 4.87452 4.91541 5.03303 5.03614 5.14661 5.16530 5.18746 5.24858 5.45707 5.52095 5.73791 5.95950 6.19295 6.22809 6.45679 6.86785 6.99381 7.24875 7.51861 8.04307 8.82449 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.004017 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.460415 B = 6968.236906 C = 7801.545150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.490 3.510 3 O -0.563 6.563 4 N -0.612 5.612 5 C 0.064 3.936 6 C 0.039 3.961 7 O -0.382 6.382 8 C 0.076 3.924 9 C 0.085 3.915 10 H 0.099 0.901 11 C 0.538 3.462 12 O -0.568 6.568 13 N -0.723 5.723 14 C 0.144 3.856 15 C -0.105 4.105 16 H 0.074 0.926 17 C -0.098 4.098 18 C -0.123 4.123 19 C 0.136 3.864 20 N -0.622 5.622 21 C -0.326 4.326 22 H 0.039 0.961 23 C -0.062 4.062 24 N -0.955 5.955 25 Si 1.108 2.892 26 H -0.280 1.280 27 H -0.284 1.284 28 H -0.305 1.305 29 C 0.134 3.866 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.060 0.940 39 H 0.401 0.599 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.028 0.972 48 H 0.251 0.749 49 H 0.018 0.982 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 -9.360 17.554 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.281 3.719 3 O -0.441 6.441 4 N -0.350 5.350 5 C -0.057 4.057 6 C -0.037 4.037 7 O -0.300 6.300 8 C -0.002 4.002 9 C -0.023 4.023 10 H 0.117 0.883 11 C 0.325 3.675 12 O -0.448 6.448 13 N -0.374 5.374 14 C 0.020 3.980 15 C -0.125 4.125 16 H 0.093 0.907 17 C -0.136 4.136 18 C -0.162 4.162 19 C 0.011 3.989 20 N -0.347 5.347 21 C -0.456 4.456 22 H 0.056 0.944 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.937 3.063 26 H -0.208 1.208 27 H -0.210 1.210 28 H -0.234 1.234 29 C 0.009 3.991 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.160 0.840 37 H 0.140 0.860 38 H 0.078 0.922 39 H 0.235 0.765 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.046 0.954 48 H 0.060 0.940 49 H 0.036 0.964 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.865 -9.158 18.106 23.016 hybrid contribution 1.882 0.878 -1.062 2.332 sum -8.984 -8.280 17.044 20.970 Atomic orbital electron populations 1.22014 0.87176 1.06960 1.06034 1.21960 0.92989 0.82510 0.74447 1.90758 1.70134 1.32692 1.50557 1.48356 1.05006 1.08135 1.73492 1.23010 0.99915 0.81627 1.01108 1.23328 0.80253 1.02379 0.97782 1.87994 1.20609 1.29325 1.92100 1.22705 0.99873 0.82957 0.94658 1.21937 0.83624 0.94278 1.02428 0.88271 1.19947 0.77296 0.86617 0.83603 1.90614 1.57881 1.69129 1.27146 1.45956 1.48845 1.18870 1.23757 1.21210 0.96562 0.82757 0.97490 1.21789 0.97722 0.99153 0.93859 0.90715 1.21372 0.98870 0.94677 0.98684 1.21806 0.97752 1.01663 0.94948 1.21087 0.94412 0.87148 0.96266 1.44488 1.54186 1.25189 1.10859 1.20194 0.98777 1.31114 0.95551 0.94366 1.27039 1.05593 0.95760 0.97347 1.70976 1.24293 1.35064 1.29453 0.83145 0.72861 0.76512 0.73770 1.20759 1.21041 1.23393 1.21329 0.92309 0.95992 0.89428 0.86241 0.88193 0.87921 0.84377 0.89239 0.91888 0.83975 0.86017 0.92190 0.76487 0.90400 0.93523 0.91939 0.89526 0.89165 0.92890 0.93300 0.95429 0.93951 0.96415 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.09 71.23 0.72 -1.86 16 2 C 0.49 13.69 7.48 87.66 0.66 14.35 16 3 O -0.56 -22.25 13.27 19.83 0.26 -21.99 16 4 N -0.61 -14.29 3.02 -797.68 -2.41 -16.70 16 5 C 0.06 0.79 6.57 86.35 0.57 1.36 16 6 C 0.04 0.44 6.98 72.08 0.50 0.95 16 7 O -0.38 -7.08 10.74 -148.98 -1.60 -8.68 16 8 C 0.08 1.62 6.24 72.08 0.45 2.07 16 9 C 0.08 2.23 3.50 44.22 0.15 2.39 16 10 H 0.10 2.51 7.93 -2.39 -0.02 2.49 16 11 C 0.54 18.23 4.24 87.66 0.37 18.60 16 12 O -0.57 -22.60 14.96 19.82 0.30 -22.31 16 13 N -0.72 -24.79 5.33 -463.07 -2.47 -27.26 16 14 C 0.14 4.87 5.07 86.38 0.44 5.31 16 15 C -0.10 -3.67 2.37 -10.71 -0.03 -3.70 16 16 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 17 C -0.10 -2.90 5.17 30.62 0.16 -2.75 16 18 C -0.12 -3.84 6.06 30.53 0.19 -3.66 16 19 C 0.14 5.48 6.49 86.22 0.56 6.04 16 20 N -0.62 -30.57 2.77 -699.94 -1.94 -32.51 16 21 C -0.33 -18.98 9.90 84.03 0.83 -18.15 16 22 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 23 C -0.06 -3.70 5.26 84.86 0.45 -3.26 16 24 N -0.96 -60.85 13.70 21.65 0.30 -60.56 16 25 Si 1.11 57.28 24.67 68.60 1.69 58.97 16 26 H -0.28 -13.71 6.52 99.48 0.65 -13.06 16 27 H -0.28 -14.42 6.69 99.48 0.67 -13.76 16 28 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 29 C 0.13 6.00 3.27 86.36 0.28 6.28 16 30 H 0.12 0.84 5.21 -2.38 -0.01 0.83 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.14 0.71 5.14 -2.39 -0.01 0.70 16 34 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.14 0.69 8.14 -2.39 -0.02 0.68 16 37 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 1.39 7.86 -2.39 -0.02 1.38 16 39 H 0.40 13.58 7.54 -92.70 -0.70 12.88 16 40 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 44 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 47 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.25 16.03 8.73 -92.70 -0.81 15.22 16 49 H 0.02 0.84 7.07 -2.39 -0.02 0.82 16 50 H 0.05 2.43 3.65 -2.38 -0.01 2.42 16 Total: -1.00 -85.12 380.61 0.54 -84.57 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.11 Total: 22.47 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 6.30 Total: 23.98 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -6.52 Total: -137.02 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.04 Total: -52.98 kcal Atomic # 14 Polarization: 57.28 SS G_CDS: 1.69 Total: 58.97 kcal Total: -85.12 0.54 -84.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023757521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.091 kcal (2) G-P(sol) polarization free energy of solvation -85.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds