Wall clock time and date at job start Sat Apr 11 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 119.99785 * 2 1 4 4 N 1.34772 * 120.00527 * 180.02562 * 2 1 3 5 5 C 1.47157 * 120.97792 * 5.74530 * 4 2 1 6 6 C 1.53299 * 108.38340 * 129.43600 * 5 4 2 7 7 O 1.42966 * 109.22021 * 52.29957 * 6 5 4 8 8 C 1.42960 * 114.16872 * 297.41611 * 7 6 5 9 9 H 1.09000 * 109.51628 * 302.61124 * 8 7 6 10 10 C 1.50699 * 109.51408 * 182.50406 * 8 7 6 11 11 O 1.21286 * 119.99746 * 355.10938 * 10 8 7 12 12 N 1.34776 * 120.00189 * 175.10138 * 10 8 7 13 13 C 1.46501 * 119.99766 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46684 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.58782 * 301.92640 * 14 13 12 16 16 C 1.53194 * 109.58280 * 181.49933 * 14 13 12 17 17 C 1.53046 * 109.30879 * 185.57941 * 16 14 13 18 18 C 1.53353 * 109.60978 * 61.37495 * 17 16 14 19 19 C 1.53196 * 109.14295 * 298.71127 * 18 17 16 20 20 N 1.46916 * 108.89575 * 54.58062 * 19 18 17 21 21 C 1.36941 * 120.63131 * 126.29614 * 20 19 18 22 22 H 1.07999 * 119.99775 * 216.19857 * 21 20 19 23 23 C 1.38812 * 120.00052 * 36.20093 * 21 20 19 24 24 N 1.31620 * 119.99774 * 217.41656 * 23 21 20 25 25 Si 1.86798 * 120.00205 * 37.41102 * 23 21 20 26 26 H 1.48497 * 109.47095 * 84.61529 * 25 23 21 27 27 H 1.48499 * 109.46973 * 204.62255 * 25 23 21 28 28 H 1.48505 * 109.46872 * 324.61609 * 25 23 21 29 29 C 1.47166 * 120.94613 * 185.67863 * 4 2 1 30 30 H 1.08998 * 109.46940 * 185.46744 * 1 2 3 31 31 H 1.09000 * 109.47134 * 305.46822 * 1 2 3 32 32 H 1.09003 * 109.47693 * 65.47003 * 1 2 3 33 33 H 1.09002 * 109.67992 * 9.71436 * 5 4 2 34 34 H 1.08997 * 109.68019 * 249.15524 * 5 4 2 35 35 H 1.09003 * 109.51079 * 292.37740 * 6 5 4 36 36 H 1.08994 * 109.51382 * 172.21975 * 6 5 4 37 37 H 0.97002 * 120.00021 * 0.02562 * 12 10 8 38 38 H 1.08996 * 109.47349 * 60.00686 * 13 12 10 39 39 H 1.08994 * 109.47442 * 300.00036 * 13 12 10 40 40 H 1.08998 * 109.49900 * 305.52538 * 16 14 13 41 41 H 1.08999 * 109.49879 * 65.62871 * 16 14 13 42 42 H 1.09004 * 109.45612 * 181.38496 * 17 16 14 43 43 H 1.08999 * 109.45832 * 301.35557 * 17 16 14 44 44 H 1.08998 * 109.68532 * 178.74523 * 18 17 16 45 45 H 1.08996 * 109.47408 * 58.54390 * 18 17 16 46 46 H 1.08996 * 109.58704 * 294.71475 * 19 18 17 47 47 H 1.09007 * 109.58160 * 174.43752 * 19 18 17 48 48 H 0.96996 * 120.00209 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.64142 * 110.81933 * 29 4 2 50 50 H 1.09002 * 109.72601 * 350.26270 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4726 -2.4507 -0.1274 6 6 2.1433 -3.2652 -1.2396 7 8 3.5488 -3.3376 -0.9877 8 6 4.2116 -2.0710 -0.9994 9 1 4.0467 -1.5826 -1.9598 10 6 5.6893 -2.2742 -0.7851 11 8 6.1210 -3.3826 -0.5485 12 7 6.5313 -1.2242 -0.8564 13 6 7.9679 -1.4219 -0.6486 14 6 8.6918 -0.0805 -0.7820 15 1 8.4947 0.3448 -1.7661 16 6 10.1986 -0.2901 -0.6022 17 6 10.9017 1.0693 -0.5977 18 6 10.3876 1.9107 0.5768 19 6 8.8826 2.1420 0.4083 20 7 8.2153 0.8419 0.2576 21 6 7.1692 0.4961 1.0710 22 1 7.0538 -0.5272 1.3966 23 6 6.2573 1.4607 1.4768 24 7 5.7590 1.4242 2.6945 25 14 5.7374 2.8106 0.2950 26 1 4.6305 2.3177 -0.5634 27 1 5.2772 3.9933 1.0660 28 1 6.8917 3.1939 -0.5572 29 6 3.6470 -1.1944 0.1244 30 1 -0.3633 -1.0230 0.0979 31 1 -0.3633 0.5963 0.8370 32 1 -0.3634 0.4266 -0.9349 33 1 0.4286 -2.2701 -0.3833 34 1 1.5313 -2.9970 0.8140 35 1 1.9702 -2.7807 -2.2005 36 1 1.7244 -4.2712 -1.2573 37 1 6.1860 -0.3376 -1.0454 38 1 8.3508 -2.1175 -1.3954 39 1 8.1383 -1.8287 0.3481 40 1 10.3849 -0.7991 0.3434 41 1 10.5823 -0.8954 -1.4235 42 1 11.9767 0.9217 -0.4946 43 1 10.6945 1.5884 -1.5335 44 1 10.9035 2.8706 0.5944 45 1 10.5717 1.3809 1.5114 46 1 8.7034 2.7497 -0.4786 47 1 8.4910 2.6541 1.2873 48 1 5.1220 2.0985 2.9783 49 1 3.9246 -1.6135 1.0915 50 1 4.0428 -0.1827 0.0348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024785277.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:32 Heat of formation + Delta-G solvation = -76.044255 kcal Electronic energy + Delta-G solvation = -32330.283952 eV Core-core repulsion = 28165.909734 eV Total energy + Delta-G solvation = -4164.374217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.45366 -39.17778 -38.19347 -37.48740 -34.77670 -34.17692 -32.98085 -32.19962 -30.77578 -30.56233 -29.88477 -27.83176 -25.97928 -24.85727 -24.10858 -22.53284 -22.42729 -20.76305 -19.98010 -19.29900 -19.15815 -17.44385 -16.91089 -16.73404 -16.20048 -16.04812 -15.50494 -15.42022 -15.01409 -14.92222 -14.70995 -14.22693 -13.83043 -13.71520 -13.55733 -13.53239 -13.35460 -13.07162 -13.01315 -12.63179 -12.37556 -12.12653 -12.10521 -11.99667 -11.71096 -11.56565 -11.49716 -11.27062 -10.87661 -10.70147 -10.49959 -10.43683 -10.18721 -10.16392 -9.84614 -9.73938 -9.64875 -9.46336 -9.21643 -8.53683 -8.44704 -8.23067 -6.80583 -6.08413 -3.32786 2.69258 2.81311 3.12477 3.22828 3.46825 3.56720 3.67338 4.22465 4.54700 4.59536 4.62248 4.74148 4.84801 4.93614 4.95029 5.16605 5.17811 5.24492 5.26000 5.32544 5.36110 5.45267 5.49089 5.56622 5.56856 5.70845 5.83343 5.85544 5.93437 6.02419 6.18966 6.21017 6.23904 6.29219 6.37746 6.48243 6.50396 6.54953 6.65256 6.82868 6.91903 6.97377 7.07342 7.14964 7.39525 7.98333 8.14420 8.24087 8.38602 8.77112 8.97224 9.72173 10.18578 11.05346 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.004721 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.944322 B = 5928.968102 C = 7552.329748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.507 3.493 3 O -0.527 6.527 4 N -0.618 5.618 5 C 0.067 3.933 6 C 0.047 3.953 7 O -0.350 6.350 8 C 0.065 3.935 9 H 0.081 0.919 10 C 0.521 3.479 11 O -0.537 6.537 12 N -0.688 5.688 13 C 0.139 3.861 14 C 0.157 3.843 15 H 0.033 0.967 16 C -0.126 4.126 17 C -0.108 4.108 18 C -0.138 4.138 19 C 0.145 3.855 20 N -0.595 5.595 21 C -0.286 4.286 22 H 0.080 0.920 23 C 0.060 3.940 24 N -0.866 5.866 25 Si 0.819 3.181 26 H -0.272 1.272 27 H -0.299 1.299 28 H -0.264 1.264 29 C 0.092 3.908 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.408 0.592 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.023 0.977 47 H 0.065 0.935 48 H 0.263 0.737 49 H 0.087 0.913 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 -5.474 -8.739 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.296 3.704 3 O -0.402 6.402 4 N -0.354 5.354 5 C -0.056 4.056 6 C -0.031 4.031 7 O -0.267 6.267 8 C 0.003 3.997 9 H 0.099 0.901 10 C 0.305 3.695 11 O -0.414 6.414 12 N -0.340 5.340 13 C 0.015 3.985 14 C 0.051 3.949 15 H 0.051 0.949 16 C -0.166 4.166 17 C -0.145 4.145 18 C -0.177 4.177 19 C 0.020 3.980 20 N -0.320 5.320 21 C -0.413 4.413 22 H 0.098 0.902 23 C -0.144 4.144 24 N -0.503 5.503 25 Si 0.645 3.355 26 H -0.198 1.198 27 H -0.226 1.226 28 H -0.189 1.189 29 C -0.031 4.031 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.245 0.755 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.041 0.959 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.105 0.895 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.003 -5.803 -8.368 11.821 hybrid contribution -0.899 1.579 -0.601 1.914 sum -6.902 -4.225 -8.968 12.080 Atomic orbital electron populations 1.21987 0.91932 1.04263 1.05246 1.20844 0.90527 0.83119 0.75944 1.90839 1.70278 1.30625 1.48454 1.48213 1.07353 1.06042 1.73816 1.22582 0.97243 0.84991 1.00785 1.23029 0.82054 1.01339 0.96684 1.88093 1.19335 1.26838 1.92458 1.22284 0.92001 0.85917 0.99545 0.90114 1.19652 0.86658 0.85127 0.78111 1.90671 1.77918 1.24326 1.48492 1.45789 1.07591 1.10451 1.70166 1.21287 0.79067 0.96681 1.01463 1.20822 0.91928 0.89940 0.92226 0.94949 1.21904 0.96348 0.96918 1.01421 1.21414 0.98275 0.96231 0.98627 1.22112 0.98735 0.98540 0.98350 1.21268 0.89860 0.87793 0.99093 1.44318 1.35726 1.15405 1.36525 1.18606 1.02527 0.96958 1.23230 0.90241 1.25361 0.96944 0.96639 0.95490 1.70112 1.30209 1.35146 1.14850 0.87827 0.80112 0.83083 0.84469 1.19800 1.22576 1.18943 1.22214 0.79107 1.03058 0.98712 0.90165 0.88651 0.88910 0.88316 0.90144 0.92646 0.87217 0.75529 0.92403 0.90905 0.91631 0.92745 0.93273 0.92893 0.93237 0.91970 0.95931 0.91637 0.92708 0.89478 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 10.00 36.00 0.36 -1.35 16 2 C 0.51 8.02 7.81 -10.99 -0.09 7.94 16 3 O -0.53 -11.35 16.57 5.55 0.09 -11.26 16 4 N -0.62 -9.21 3.02 -172.26 -0.52 -9.73 16 5 C 0.07 0.68 6.41 -3.53 -0.02 0.66 16 6 C 0.05 0.49 6.99 37.31 0.26 0.75 16 7 O -0.35 -5.57 9.92 -55.07 -0.55 -6.12 16 8 C 0.06 1.09 3.19 -27.73 -0.09 1.00 16 9 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 10 C 0.52 10.19 7.18 -10.99 -0.08 10.11 16 11 O -0.54 -12.08 16.51 -14.28 -0.24 -12.31 16 12 N -0.69 -13.14 3.99 -60.30 -0.24 -13.38 16 13 C 0.14 2.57 4.43 -4.04 -0.02 2.55 16 14 C 0.16 2.87 2.99 -67.60 -0.20 2.67 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 16 C -0.13 -2.00 5.37 -26.61 -0.14 -2.14 16 17 C -0.11 -1.63 5.89 -26.52 -0.16 -1.79 16 18 C -0.14 -2.38 6.11 -26.45 -0.16 -2.54 16 19 C 0.15 3.03 4.54 -3.71 -0.02 3.01 16 20 N -0.59 -12.93 2.56 -164.78 -0.42 -13.36 16 21 C -0.29 -7.19 7.08 -15.06 -0.11 -7.29 16 22 H 0.08 2.20 6.34 -52.49 -0.33 1.87 16 23 C 0.06 1.60 4.73 -17.43 -0.08 1.52 16 24 N -0.87 -25.12 13.97 55.49 0.78 -24.35 16 25 Si 0.82 20.69 27.23 -169.99 -4.63 16.06 16 26 H -0.27 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 28 H -0.26 -6.35 5.21 56.52 0.29 -6.05 16 29 C 0.09 1.68 5.90 -3.53 -0.02 1.66 16 30 H 0.08 0.54 5.40 -51.93 -0.28 0.26 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.64 5.42 -51.93 -0.28 0.36 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.41 8.00 7.57 -40.82 -0.31 7.69 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.52 7.28 -51.93 -0.38 1.14 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.02 0.48 6.74 -51.93 -0.35 0.13 16 47 H 0.07 1.51 6.68 -51.93 -0.35 1.17 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 50 H 0.12 2.54 7.06 -51.93 -0.37 2.17 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -34.35 384.72 -8.72 -43.07 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -8.23 Total: 8.82 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: -0.56 Total: 16.75 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.41 Total: -60.81 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.69 Total: -29.69 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.63 Total: 16.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.35 -8.72 -43.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024785277.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.974 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds