Wall clock time and date at job start Sat Apr 11 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 119.99785 * 2 1 4 4 N 1.34772 * 120.00527 * 180.02562 * 2 1 3 5 5 C 1.47157 * 120.97792 * 5.74530 * 4 2 1 6 6 C 1.53299 * 108.38340 * 129.43600 * 5 4 2 7 7 O 1.42966 * 109.22021 * 52.29957 * 6 5 4 8 8 C 1.42960 * 114.16872 * 297.41611 * 7 6 5 9 9 H 1.09000 * 109.51628 * 302.61124 * 8 7 6 10 10 C 1.50699 * 109.51408 * 182.50406 * 8 7 6 11 11 O 1.21286 * 119.99746 * 355.10938 * 10 8 7 12 12 N 1.34776 * 120.00189 * 175.10138 * 10 8 7 13 13 C 1.46501 * 119.99766 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46684 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.58782 * 301.92640 * 14 13 12 16 16 C 1.53194 * 109.58280 * 181.49933 * 14 13 12 17 17 C 1.53046 * 109.30879 * 185.57941 * 16 14 13 18 18 C 1.53353 * 109.60978 * 61.37495 * 17 16 14 19 19 C 1.53196 * 109.14295 * 298.71127 * 18 17 16 20 20 N 1.46916 * 108.89575 * 54.58062 * 19 18 17 21 21 C 1.36941 * 120.63131 * 126.29614 * 20 19 18 22 22 H 1.07999 * 119.99775 * 216.19857 * 21 20 19 23 23 C 1.38812 * 120.00052 * 36.20093 * 21 20 19 24 24 N 1.31620 * 119.99774 * 217.41656 * 23 21 20 25 25 Si 1.86798 * 120.00205 * 37.41102 * 23 21 20 26 26 H 1.48497 * 109.47095 * 84.61529 * 25 23 21 27 27 H 1.48499 * 109.46973 * 204.62255 * 25 23 21 28 28 H 1.48505 * 109.46872 * 324.61609 * 25 23 21 29 29 C 1.47166 * 120.94613 * 185.67863 * 4 2 1 30 30 H 1.08998 * 109.46940 * 185.46744 * 1 2 3 31 31 H 1.09000 * 109.47134 * 305.46822 * 1 2 3 32 32 H 1.09003 * 109.47693 * 65.47003 * 1 2 3 33 33 H 1.09002 * 109.67992 * 9.71436 * 5 4 2 34 34 H 1.08997 * 109.68019 * 249.15524 * 5 4 2 35 35 H 1.09003 * 109.51079 * 292.37740 * 6 5 4 36 36 H 1.08994 * 109.51382 * 172.21975 * 6 5 4 37 37 H 0.97002 * 120.00021 * 0.02562 * 12 10 8 38 38 H 1.08996 * 109.47349 * 60.00686 * 13 12 10 39 39 H 1.08994 * 109.47442 * 300.00036 * 13 12 10 40 40 H 1.08998 * 109.49900 * 305.52538 * 16 14 13 41 41 H 1.08999 * 109.49879 * 65.62871 * 16 14 13 42 42 H 1.09004 * 109.45612 * 181.38496 * 17 16 14 43 43 H 1.08999 * 109.45832 * 301.35557 * 17 16 14 44 44 H 1.08998 * 109.68532 * 178.74523 * 18 17 16 45 45 H 1.08996 * 109.47408 * 58.54390 * 18 17 16 46 46 H 1.08996 * 109.58704 * 294.71475 * 19 18 17 47 47 H 1.09007 * 109.58160 * 174.43752 * 19 18 17 48 48 H 0.96996 * 120.00209 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.64142 * 110.81933 * 29 4 2 50 50 H 1.09002 * 109.72601 * 350.26270 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4726 -2.4507 -0.1274 6 6 2.1433 -3.2652 -1.2396 7 8 3.5488 -3.3376 -0.9877 8 6 4.2116 -2.0710 -0.9994 9 1 4.0467 -1.5826 -1.9598 10 6 5.6893 -2.2742 -0.7851 11 8 6.1210 -3.3826 -0.5485 12 7 6.5313 -1.2242 -0.8564 13 6 7.9679 -1.4219 -0.6486 14 6 8.6918 -0.0805 -0.7820 15 1 8.4947 0.3448 -1.7661 16 6 10.1986 -0.2901 -0.6022 17 6 10.9017 1.0693 -0.5977 18 6 10.3876 1.9107 0.5768 19 6 8.8826 2.1420 0.4083 20 7 8.2153 0.8419 0.2576 21 6 7.1692 0.4961 1.0710 22 1 7.0538 -0.5272 1.3966 23 6 6.2573 1.4607 1.4768 24 7 5.7590 1.4242 2.6945 25 14 5.7374 2.8106 0.2950 26 1 4.6305 2.3177 -0.5634 27 1 5.2772 3.9933 1.0660 28 1 6.8917 3.1939 -0.5572 29 6 3.6470 -1.1944 0.1244 30 1 -0.3633 -1.0230 0.0979 31 1 -0.3633 0.5963 0.8370 32 1 -0.3634 0.4266 -0.9349 33 1 0.4286 -2.2701 -0.3833 34 1 1.5313 -2.9970 0.8140 35 1 1.9702 -2.7807 -2.2005 36 1 1.7244 -4.2712 -1.2573 37 1 6.1860 -0.3376 -1.0454 38 1 8.3508 -2.1175 -1.3954 39 1 8.1383 -1.8287 0.3481 40 1 10.3849 -0.7991 0.3434 41 1 10.5823 -0.8954 -1.4235 42 1 11.9767 0.9217 -0.4946 43 1 10.6945 1.5884 -1.5335 44 1 10.9035 2.8706 0.5944 45 1 10.5717 1.3809 1.5114 46 1 8.7034 2.7497 -0.4786 47 1 8.4910 2.6541 1.2873 48 1 5.1220 2.0985 2.9783 49 1 3.9246 -1.6135 1.0915 50 1 4.0428 -0.1827 0.0348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024785277.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:31 Heat of formation + Delta-G solvation = -101.268239 kcal Electronic energy + Delta-G solvation = -32331.377746 eV Core-core repulsion = 28165.909734 eV Total energy + Delta-G solvation = -4165.468011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.74500 -40.65883 -39.63194 -38.91356 -36.07457 -35.70053 -34.87029 -33.49204 -32.53450 -32.04412 -30.84076 -29.01982 -27.57459 -26.45351 -25.41600 -24.07879 -23.68436 -22.26293 -21.54132 -20.80099 -20.36539 -18.86860 -18.37524 -18.04400 -17.78604 -17.40611 -17.00884 -16.71315 -16.52443 -16.44955 -16.15605 -15.51355 -15.35883 -15.22964 -14.94953 -14.79054 -14.73051 -14.65156 -14.32728 -14.11918 -13.79519 -13.70226 -13.51019 -13.19086 -13.09260 -12.90051 -12.74964 -12.72632 -12.59951 -12.30595 -12.06265 -11.93663 -11.64441 -11.52552 -11.42902 -11.23978 -11.18149 -10.99884 -10.74317 -10.43066 -9.97533 -9.75877 -8.67803 -8.23520 -5.40276 1.35360 1.39125 1.46478 1.50356 1.56758 1.82270 1.88759 2.48402 2.92183 3.00960 3.40667 3.42643 3.59069 3.64180 3.75979 3.92844 3.96153 4.01155 4.14419 4.21886 4.22342 4.29611 4.37876 4.48566 4.49423 4.56475 4.58786 4.62740 4.68180 4.69955 4.76148 4.84632 4.95614 5.03335 5.04674 5.11656 5.17391 5.20585 5.30598 5.34242 5.37139 5.51613 5.67447 5.90258 5.92885 6.27164 6.28551 6.54190 7.01131 7.04203 7.18096 7.70799 8.18191 8.94492 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.004721 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.944322 B = 5928.968102 C = 7552.329748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.496 3.504 3 O -0.597 6.597 4 N -0.617 5.617 5 C 0.063 3.937 6 C 0.038 3.962 7 O -0.373 6.373 8 C 0.081 3.919 9 H 0.101 0.899 10 C 0.517 3.483 11 O -0.569 6.569 12 N -0.689 5.689 13 C 0.140 3.860 14 C 0.155 3.845 15 H 0.051 0.949 16 C -0.121 4.121 17 C -0.103 4.103 18 C -0.131 4.131 19 C 0.140 3.860 20 N -0.607 5.607 21 C -0.244 4.244 22 H 0.048 0.952 23 C 0.019 3.981 24 N -0.914 5.914 25 Si 0.871 3.129 26 H -0.289 1.289 27 H -0.322 1.322 28 H -0.239 1.239 29 C 0.101 3.899 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.148 0.852 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.405 0.595 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.029 0.971 47 H 0.034 0.966 48 H 0.254 0.746 49 H 0.054 0.946 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 -6.457 -11.616 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.287 3.713 3 O -0.478 6.478 4 N -0.352 5.352 5 C -0.058 4.058 6 C -0.038 4.038 7 O -0.291 6.291 8 C 0.018 3.982 9 H 0.118 0.882 10 C 0.301 3.699 11 O -0.449 6.449 12 N -0.339 5.339 13 C 0.017 3.983 14 C 0.050 3.950 15 H 0.068 0.932 16 C -0.161 4.161 17 C -0.140 4.140 18 C -0.170 4.170 19 C 0.015 3.985 20 N -0.333 5.333 21 C -0.373 4.373 22 H 0.066 0.934 23 C -0.181 4.181 24 N -0.556 5.556 25 Si 0.699 3.301 26 H -0.216 1.216 27 H -0.251 1.251 28 H -0.163 1.163 29 C -0.023 4.023 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.165 0.835 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.164 0.836 37 H 0.241 0.759 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.221 -6.820 -11.298 14.589 hybrid contribution -0.812 1.756 0.304 1.958 sum -7.033 -5.064 -10.994 13.999 Atomic orbital electron populations 1.22029 0.86465 1.07058 1.06440 1.22087 0.92999 0.82078 0.74120 1.90807 1.72127 1.33153 1.51685 1.48403 1.05874 1.08034 1.72899 1.22978 0.99193 0.82518 1.01115 1.23478 0.79159 1.03780 0.97422 1.88069 1.22443 1.25852 1.92727 1.22009 0.90163 0.86511 0.99488 0.88174 1.20170 0.87970 0.84562 0.77150 1.90636 1.78773 1.25451 1.50041 1.45849 1.08072 1.10245 1.69688 1.21329 0.78999 0.97496 1.00501 1.21051 0.93721 0.88614 0.91582 0.93168 1.21873 0.94038 0.98089 1.02078 1.21413 0.99694 0.95032 0.97883 1.22013 0.95898 1.00247 0.98878 1.21290 0.92364 0.86885 0.97916 1.44469 1.34968 1.16448 1.37374 1.18341 1.02316 0.95082 1.21594 0.93441 1.25653 0.97869 0.98422 0.96107 1.70203 1.32233 1.36520 1.16627 0.87022 0.79875 0.80336 0.82838 1.21594 1.25115 1.16307 1.21742 0.82095 1.00678 0.97824 0.86280 0.88347 0.86864 0.83467 0.89961 0.90924 0.83605 0.75882 0.89942 0.93962 0.93047 0.89392 0.90444 0.91594 0.90814 0.93523 0.95325 0.94731 0.93661 0.92713 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.00 71.24 0.71 -1.98 16 2 C 0.50 15.66 7.81 87.66 0.68 16.34 16 3 O -0.60 -27.09 16.57 -3.05 -0.05 -27.14 16 4 N -0.62 -18.28 3.02 -817.30 -2.47 -20.75 16 5 C 0.06 1.10 6.41 86.35 0.55 1.65 16 6 C 0.04 0.68 6.99 72.08 0.50 1.19 16 7 O -0.37 -11.52 9.92 -130.02 -1.29 -12.81 16 8 C 0.08 2.77 3.19 29.95 0.10 2.86 16 9 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 10 C 0.52 20.84 7.18 87.66 0.63 21.47 16 11 O -0.57 -26.28 16.51 15.92 0.26 -26.01 16 12 N -0.69 -27.01 3.99 -463.06 -1.85 -28.86 16 13 C 0.14 5.20 4.43 86.38 0.38 5.58 16 14 C 0.16 5.46 2.99 44.98 0.13 5.59 16 15 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 16 C -0.12 -3.48 5.37 30.67 0.16 -3.32 16 17 C -0.10 -2.71 5.89 30.73 0.18 -2.53 16 18 C -0.13 -4.24 6.11 30.78 0.19 -4.06 16 19 C 0.14 5.75 4.54 86.37 0.39 6.14 16 20 N -0.61 -26.48 2.56 -675.23 -1.73 -28.21 16 21 C -0.24 -12.83 7.08 84.03 0.60 -12.24 16 22 H 0.05 2.82 6.34 -2.91 -0.02 2.80 16 23 C 0.02 1.08 4.73 84.86 0.40 1.48 16 24 N -0.91 -56.70 13.97 21.65 0.30 -56.40 16 25 Si 0.87 45.28 27.23 68.60 1.87 47.15 16 26 H -0.29 -15.71 7.11 99.48 0.71 -15.01 16 27 H -0.32 -17.95 7.11 99.48 0.71 -17.25 16 28 H -0.24 -11.22 5.21 99.48 0.52 -10.71 16 29 C 0.10 3.92 5.90 86.35 0.51 4.43 16 30 H 0.12 0.99 5.40 -2.39 -0.01 0.97 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.15 1.13 5.42 -2.39 -0.01 1.12 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.41 16.40 7.57 -92.71 -0.70 15.70 16 38 H 0.08 2.66 8.14 -2.39 -0.02 2.65 16 39 H 0.04 1.83 7.28 -2.39 -0.02 1.81 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.03 1.15 6.74 -2.39 -0.02 1.13 16 47 H 0.03 1.61 6.68 -2.38 -0.02 1.60 16 48 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 49 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.08 3.64 7.06 -2.39 -0.02 3.63 16 Total: -1.00 -83.57 384.72 1.23 -82.34 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.06 Total: 28.07 kcal Atomic # 6 Polarization: 36.50 SS G_CDS: 6.13 Total: 42.63 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -5.74 Total: -134.22 kcal Atomic # 8 Polarization: -64.88 SS G_CDS: -1.08 Total: -65.96 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.87 Total: 47.15 kcal Total: -83.57 1.23 -82.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024785277.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.931 kcal (2) G-P(sol) polarization free energy of solvation -83.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds