Wall clock time and date at job start Sat Apr 11 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21285 * 120.00155 * 2 1 4 4 N 1.34779 * 120.00428 * 179.97438 * 2 1 3 5 5 C 1.47153 * 120.97694 * 7.01015 * 4 2 1 6 6 C 1.53302 * 108.38047 * 230.51027 * 5 4 2 7 7 O 1.42957 * 109.22094 * 307.69317 * 6 5 4 8 8 C 1.42980 * 114.19857 * 62.56866 * 7 6 5 9 9 C 1.47146 * 120.98838 * 186.98126 * 4 2 1 10 10 H 1.08999 * 109.68277 * 249.24982 * 9 4 2 11 11 C 1.50709 * 109.67944 * 9.76426 * 9 4 2 12 12 O 1.21277 * 119.99538 * 65.27299 * 11 9 4 13 13 N 1.34765 * 119.99905 * 245.27101 * 11 9 4 14 14 C 1.46511 * 120.00025 * 180.02562 * 13 11 9 15 15 H 1.09006 * 109.46650 * 35.00298 * 14 13 11 16 16 C 1.52998 * 109.47064 * 275.00602 * 14 13 11 17 17 C 1.52996 * 109.47117 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47235 * 59.99558 * 17 16 14 19 19 C 1.53000 * 109.46922 * 300.00113 * 18 17 16 20 20 C 1.52993 * 109.47475 * 155.00158 * 14 13 11 21 21 H 1.08998 * 109.47085 * 60.00055 * 20 14 13 22 22 N 1.46506 * 109.46960 * 300.00349 * 20 14 13 23 23 C 1.36934 * 120.00196 * 154.72523 * 22 20 14 24 24 H 1.08003 * 120.00096 * 0.27161 * 23 22 20 25 25 C 1.38812 * 120.00471 * 180.27442 * 23 22 20 26 26 N 1.31618 * 120.00161 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99693 * 359.97438 * 25 23 22 28 28 H 1.48510 * 109.47093 * 90.00158 * 27 25 23 29 29 H 1.48499 * 109.47445 * 209.99902 * 27 25 23 30 30 H 1.48497 * 109.47248 * 330.00284 * 27 25 23 31 31 H 1.09001 * 109.47022 * 185.48994 * 1 2 3 32 32 H 1.09004 * 109.47102 * 305.48476 * 1 2 3 33 33 H 1.08998 * 109.47143 * 65.48499 * 1 2 3 34 34 H 1.08996 * 109.68453 * 350.23009 * 5 4 2 35 35 H 1.08992 * 109.68638 * 110.74929 * 5 4 2 36 36 H 1.08996 * 109.51470 * 67.62553 * 6 5 4 37 37 H 1.09006 * 109.50987 * 187.77304 * 6 5 4 38 38 H 1.08997 * 109.54565 * 177.53156 * 8 7 6 39 39 H 1.08996 * 109.48393 * 57.37812 * 8 7 6 40 40 H 0.97000 * 120.00717 * 0.02562 * 13 11 9 41 41 H 1.09006 * 109.47139 * 299.99397 * 16 14 13 42 42 H 1.08993 * 109.47461 * 59.99284 * 16 14 13 43 43 H 1.09000 * 109.47304 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.47062 * 299.99629 * 17 16 14 45 45 H 1.08998 * 109.47038 * 60.00056 * 18 17 16 46 46 H 1.09004 * 109.46979 * 180.02562 * 18 17 16 47 47 H 1.08998 * 109.47218 * 299.99833 * 19 18 17 48 48 H 1.09005 * 109.46606 * 179.97438 * 19 18 17 49 49 H 0.97000 * 119.99812 * 334.99729 * 22 20 14 50 50 H 0.97004 * 119.99760 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4753 -2.4493 -0.1529 6 6 1.9308 -3.3891 0.9694 7 8 3.3590 -3.4482 0.9831 8 6 3.9947 -2.1979 1.2607 9 6 3.6441 -1.1970 0.1539 10 1 4.1051 -1.5095 -0.7831 11 6 4.1428 0.1738 0.5325 12 8 3.8303 0.6595 1.5989 13 7 4.9361 0.8598 -0.3139 14 6 5.4214 2.1922 0.0545 15 1 5.6064 2.2274 1.1281 16 6 4.3687 3.2388 -0.3162 17 6 4.8752 4.6302 0.0690 18 6 6.1751 4.9258 -0.6820 19 6 7.2276 3.8791 -0.3112 20 6 6.7209 2.4875 -0.6970 21 1 6.5359 2.4522 -1.7706 22 7 7.7288 1.4852 -0.3420 23 6 8.7498 1.2036 -1.2099 24 1 8.8146 1.7236 -2.1544 25 6 9.7016 0.2499 -0.8761 26 7 10.6832 -0.0203 -1.7102 27 14 9.5899 -0.6489 0.7576 28 1 8.7760 -1.8799 0.5907 29 1 10.9542 -1.0159 1.2150 30 1 8.9507 0.2342 1.7658 31 1 -0.3633 -1.0230 0.0983 32 1 -0.3633 0.5966 0.8368 33 1 -0.3633 0.4264 -0.9350 34 1 0.3998 -2.2872 -0.0821 35 1 1.7174 -2.8881 -1.1208 36 1 1.5726 -3.0124 1.9275 37 1 1.5267 -4.3865 0.7955 38 1 5.0751 -2.3380 1.2960 39 1 3.6447 -1.8172 2.2201 40 1 5.1858 0.4715 -1.1669 41 1 4.1837 3.2036 -1.3899 42 1 3.4429 3.0285 0.2191 43 1 4.1255 5.3759 -0.1955 44 1 5.0600 4.6652 1.1427 45 1 5.9903 4.8908 -1.7557 46 1 6.5361 5.9169 -0.4072 47 1 7.4124 3.9141 0.7624 48 1 8.1535 4.0895 -0.8467 49 1 7.6706 1.0182 0.5062 50 1 11.3481 -0.6870 -1.4770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085428021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:20 Heat of formation + Delta-G solvation = -92.203511 kcal Electronic energy + Delta-G solvation = -32242.014329 eV Core-core repulsion = 28076.939393 eV Total energy + Delta-G solvation = -4165.074935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.09791 -39.18777 -38.44407 -37.56375 -35.03836 -34.09398 -33.64780 -32.29270 -31.29902 -30.09460 -29.28946 -28.18467 -27.65100 -24.93840 -23.40759 -22.72653 -22.05900 -20.88824 -20.50196 -19.76546 -19.08298 -17.84843 -17.41735 -17.01910 -16.74352 -16.17334 -15.86173 -15.41594 -15.27129 -14.97823 -14.71939 -14.37271 -14.11764 -13.90705 -13.76302 -13.57612 -13.40459 -13.26669 -12.98910 -12.58832 -12.54145 -12.40113 -12.24446 -12.07074 -12.01059 -11.68985 -11.28675 -11.27180 -10.96892 -10.80683 -10.73350 -10.53865 -10.48702 -10.27280 -10.07283 -9.77806 -9.66224 -9.57193 -9.37649 -8.91090 -8.86654 -8.46701 -7.26596 -5.77609 -3.12692 2.29280 2.47990 3.25548 3.28047 3.36766 3.43022 3.45771 3.66783 4.27312 4.39374 4.45785 4.59066 4.71092 4.73423 4.86206 4.94403 5.01175 5.06071 5.11768 5.13419 5.22786 5.31844 5.38821 5.45168 5.53211 5.54762 5.55533 5.60092 5.70853 5.81012 5.91909 5.98268 6.03341 6.06977 6.15274 6.46225 6.50054 6.54518 6.58898 6.63245 6.74766 6.91994 6.93216 7.05521 7.11077 7.95005 7.97043 7.99246 8.41547 8.66384 9.20141 9.93050 10.13573 11.40670 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.004777 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.547474 B = 5859.901051 C = 8061.810147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.500 6.500 4 N -0.610 5.610 5 C 0.070 3.930 6 C 0.043 3.957 7 O -0.372 6.372 8 C 0.062 3.938 9 C 0.091 3.909 10 H 0.097 0.903 11 C 0.541 3.459 12 O -0.542 6.542 13 N -0.702 5.702 14 C 0.147 3.853 15 H 0.078 0.922 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.132 4.132 20 C 0.177 3.823 21 H 0.058 0.942 22 N -0.747 5.747 23 C -0.241 4.241 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.934 5.934 27 Si 0.879 3.121 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.400 0.600 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.436 -3.068 2.761 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.295 3.705 3 O -0.374 6.374 4 N -0.348 5.348 5 C -0.052 4.052 6 C -0.035 4.035 7 O -0.290 6.290 8 C -0.016 4.016 9 C -0.016 4.016 10 H 0.115 0.885 11 C 0.326 3.674 12 O -0.420 6.420 13 N -0.351 5.351 14 C 0.042 3.958 15 H 0.097 0.903 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.172 4.172 20 C 0.067 3.933 21 H 0.076 0.924 22 N -0.389 5.389 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.710 3.290 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.234 0.766 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.061 -2.315 3.287 23.409 hybrid contribution 0.064 -0.809 0.670 1.052 sum -22.997 -3.124 3.957 23.543 Atomic orbital electron populations 1.21968 0.91453 1.04266 1.05428 1.20908 0.90727 0.83045 0.75773 1.90773 1.68590 1.30311 1.47746 1.48135 1.05662 1.06699 1.74311 1.22626 0.98243 0.83890 1.00486 1.23027 0.82219 1.00517 0.97714 1.88022 1.18437 1.30424 1.92104 1.22878 0.99382 0.83021 0.96313 1.21909 0.81867 0.96316 1.01510 0.88536 1.19368 0.78209 0.85161 0.84663 1.90646 1.57511 1.69382 1.24416 1.45724 1.50257 1.18187 1.20968 1.21229 0.93382 0.80909 1.00253 0.90344 1.21804 0.99099 0.93596 1.01260 1.21501 0.97005 0.96508 1.00262 1.21579 0.95473 0.98651 1.00013 1.22167 0.98413 0.95377 1.01280 1.20480 0.86627 0.88820 0.97392 0.92384 1.42792 1.29518 1.45854 1.20712 1.19058 1.01224 1.17546 0.99247 0.89183 1.24627 0.97279 0.99433 0.97530 1.69697 1.15772 1.36512 1.36159 0.86626 0.76965 0.80191 0.85236 1.21085 1.21793 1.20360 0.90196 0.88601 0.88672 0.87873 0.89994 0.92352 0.87381 0.86889 0.91077 0.76575 0.92478 0.90517 0.92538 0.92286 0.92295 0.92701 0.92648 0.91251 0.80634 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.09 36.00 0.36 -0.87 16 2 C 0.51 6.22 7.51 -10.99 -0.08 6.13 16 3 O -0.50 -8.26 12.01 -17.85 -0.21 -8.47 16 4 N -0.61 -6.79 3.02 -166.06 -0.50 -7.30 16 5 C 0.07 0.49 6.57 -3.53 -0.02 0.46 16 6 C 0.04 0.33 6.99 37.31 0.26 0.59 16 7 O -0.37 -4.31 10.74 -35.23 -0.38 -4.69 16 8 C 0.06 0.80 6.23 37.31 0.23 1.04 16 9 C 0.09 1.23 3.50 -68.58 -0.24 0.99 16 10 H 0.10 1.23 7.94 -51.93 -0.41 0.82 16 11 C 0.54 9.21 4.09 -10.99 -0.04 9.16 16 12 O -0.54 -10.86 14.81 -17.85 -0.26 -11.13 16 13 N -0.70 -11.98 4.89 -53.80 -0.26 -12.24 16 14 C 0.15 2.62 1.97 -67.93 -0.13 2.49 16 15 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 16 C -0.12 -1.91 5.45 -26.73 -0.15 -2.05 16 17 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 18 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 16 19 C -0.13 -2.35 5.51 -26.71 -0.15 -2.49 16 20 C 0.18 3.39 2.30 -67.91 -0.16 3.24 16 21 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 22 N -0.75 -17.29 4.76 -53.40 -0.25 -17.54 16 23 C -0.24 -6.59 10.41 -15.06 -0.16 -6.74 16 24 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 26 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 27 Si 0.88 22.18 27.73 -169.99 -4.71 17.46 16 28 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 30 H -0.28 -6.79 6.52 56.52 0.37 -6.43 16 31 H 0.08 0.34 5.22 -51.93 -0.27 0.07 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.40 5.15 -51.93 -0.27 0.13 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.07 0.98 7.80 -51.93 -0.41 0.57 16 40 H 0.40 6.53 8.46 -40.82 -0.35 6.18 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.38 6.76 -51.93 -0.35 1.03 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.36 8.57 5.66 -40.82 -0.23 8.34 16 50 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -35.39 385.49 -8.88 -44.27 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -8.18 Total: 13.64 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.69 Total: 8.34 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -0.24 Total: -65.24 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.86 Total: -24.29 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.39 -8.88 -44.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085428021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.934 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds