Wall clock time and date at job start Sat Apr 11 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 119.99753 * 2 1 4 4 N 1.34776 * 120.00292 * 180.02562 * 2 1 3 5 5 C 1.46921 * 120.63406 * 179.97438 * 4 2 1 6 6 C 1.53190 * 108.77645 * 233.58329 * 5 4 2 7 7 C 1.53040 * 109.31205 * 305.36647 * 6 5 4 8 8 C 1.50707 * 109.46175 * 181.38544 * 7 6 5 9 9 O 1.21281 * 119.99700 * 359.96853 * 8 7 6 10 10 N 1.34770 * 120.00236 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00120 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.44516 * 35.03535 * 11 10 8 13 13 C 1.53034 * 109.48448 * 275.08703 * 11 10 8 14 14 C 1.53199 * 109.33860 * 178.64553 * 13 11 10 15 15 N 1.46928 * 108.77144 * 54.61807 * 14 13 11 16 16 C 1.36936 * 120.62660 * 126.37569 * 15 14 13 17 17 H 1.07997 * 120.00033 * 331.84533 * 16 15 14 18 18 C 1.38817 * 119.99895 * 151.85633 * 16 15 14 19 19 N 1.31620 * 120.00101 * 343.06855 * 18 16 15 20 20 Si 1.86805 * 119.99855 * 163.06722 * 18 16 15 21 21 H 1.48502 * 109.46927 * 60.00269 * 20 18 16 22 22 H 1.48498 * 109.46802 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46996 * 299.99929 * 20 18 16 24 24 C 1.46921 * 118.73985 * 306.39061 * 15 14 13 25 25 C 1.53037 * 109.45752 * 155.00047 * 11 10 8 26 26 H 1.08996 * 109.50000 * 301.33208 * 25 11 10 27 27 O 1.42899 * 109.50244 * 61.40368 * 25 11 10 28 28 C 1.53034 * 109.52948 * 61.37078 * 7 6 5 29 29 C 1.46931 * 120.62801 * 359.96934 * 4 2 1 30 30 H 1.09003 * 109.47480 * 239.99586 * 1 2 3 31 31 H 1.08999 * 109.47603 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47215 * 120.00073 * 1 2 3 33 33 H 1.08998 * 109.58716 * 113.79307 * 5 4 2 34 34 H 1.09002 * 109.70075 * 353.43849 * 5 4 2 35 35 H 1.08994 * 109.50070 * 185.40968 * 6 5 4 36 36 H 1.09004 * 109.49745 * 65.31320 * 6 5 4 37 37 H 1.09000 * 109.45717 * 301.35426 * 7 6 5 38 38 H 0.97004 * 120.00110 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.50193 * 58.67878 * 13 11 10 40 40 H 1.09003 * 109.49977 * 298.60835 * 13 11 10 41 41 H 1.08994 * 109.58357 * 294.83390 * 14 13 11 42 42 H 1.08995 * 109.58870 * 174.40429 * 14 13 11 43 43 H 0.97001 * 120.00016 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.59126 * 293.82079 * 24 15 14 45 45 H 1.09002 * 109.70664 * 173.46976 * 24 15 14 46 46 H 0.96695 * 114.00519 * 179.97438 * 27 25 11 47 47 H 1.08998 * 109.50048 * 58.58275 * 28 7 6 48 48 H 1.09003 * 109.49694 * 178.68127 * 28 7 6 49 49 H 1.08989 * 109.59113 * 246.20395 * 29 4 2 50 50 H 1.09001 * 109.58755 * 6.49685 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6500 -1.1833 -0.0011 6 6 4.1331 -2.0495 -1.1686 7 6 3.4893 -3.4345 -1.0716 8 6 3.9886 -4.3004 -2.1995 9 8 4.7807 -3.8537 -3.0020 10 7 3.5549 -5.5710 -2.3165 11 6 4.0398 -6.4126 -3.4132 12 1 5.0805 -6.1677 -3.6257 13 6 3.1923 -6.1615 -4.6625 14 6 3.7234 -7.0179 -5.8164 15 7 3.7611 -8.4219 -5.3848 16 6 3.1430 -9.3955 -6.1232 17 1 2.2830 -9.1500 -6.7286 18 6 3.6217 -10.6982 -6.0934 19 7 4.8339 -10.9437 -5.6431 20 14 2.5455 -12.1027 -6.6923 21 1 2.1926 -11.8827 -8.1179 22 1 3.2833 -13.3842 -6.5565 23 1 1.3049 -12.1576 -5.8780 24 6 4.4741 -8.7612 -4.1458 25 6 3.9346 -7.8853 -3.0107 26 1 4.5202 -8.0585 -2.1079 27 8 2.5666 -8.2154 -2.7625 28 6 1.9680 -3.2993 -1.1677 29 6 1.4603 -2.4476 -0.0004 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3634 1.0276 0.0005 32 1 -0.3634 -0.5139 -0.8900 33 1 4.0112 -1.6018 0.9383 34 1 4.0286 -0.1679 -0.1183 35 1 5.2176 -2.1484 -1.1238 36 1 3.8487 -1.5813 -2.1110 37 1 3.7538 -3.8919 -0.1183 38 1 2.9216 -5.9284 -1.6745 39 1 3.2495 -5.1078 -4.9353 40 1 2.1554 -6.4288 -4.4585 41 1 4.7284 -6.6903 -6.0820 42 1 3.0644 -6.9183 -6.6788 43 1 5.1682 -11.8541 -5.6219 44 1 5.5404 -8.5758 -4.2753 45 1 4.3127 -9.8120 -3.9049 46 1 2.4249 -9.1359 -2.5024 47 1 1.7041 -2.8193 -2.1101 48 1 1.5113 -4.2880 -1.1221 49 1 1.6425 -2.9695 0.9389 50 1 0.3918 -2.2657 -0.1161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090796911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:34 Heat of formation + Delta-G solvation = -105.819617 kcal Electronic energy + Delta-G solvation = -30779.824795 eV Core-core repulsion = 26614.159421 eV Total energy + Delta-G solvation = -4165.665374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.73753 -39.74659 -38.21497 -37.12445 -34.83695 -34.37469 -33.44907 -32.22369 -31.67843 -29.80643 -29.40907 -29.08904 -26.34239 -24.88057 -23.58307 -22.59329 -22.13707 -21.42843 -20.09513 -19.51762 -19.21371 -17.70142 -17.27709 -16.73690 -16.26019 -16.06749 -15.82471 -15.49822 -15.12606 -14.98329 -14.42181 -14.19253 -14.09195 -13.87066 -13.78670 -13.59587 -13.45055 -13.22811 -12.97879 -12.73145 -12.55640 -12.48871 -12.16452 -12.05844 -12.00175 -11.61919 -11.29919 -11.18716 -11.08232 -10.98246 -10.82575 -10.63097 -10.51146 -10.21906 -10.12047 -10.09529 -9.80899 -9.58704 -9.22707 -9.01273 -8.72717 -8.52958 -6.71637 -5.85137 -3.26270 2.29995 2.62875 2.73994 3.30073 3.35112 3.40292 3.41650 4.16461 4.30449 4.42744 4.44496 4.51364 4.69819 4.79790 4.83118 4.90164 4.97476 4.98242 5.08337 5.15552 5.26206 5.31428 5.36354 5.39113 5.42617 5.46071 5.53585 5.54746 5.68931 5.76280 5.91212 5.99868 6.03730 6.17306 6.17793 6.25229 6.42753 6.52275 6.75873 6.82548 6.94484 7.03472 7.12653 7.38813 7.70447 7.74822 7.83489 8.18564 8.38045 8.39212 9.14284 9.77245 10.34338 11.23684 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.002265 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.793826 B =12361.289667 C =12673.551542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.614 5.614 5 C 0.110 3.890 6 C -0.113 4.113 7 C -0.107 4.107 8 C 0.512 3.488 9 O -0.542 6.542 10 N -0.717 5.717 11 C 0.162 3.838 12 H 0.089 0.911 13 C -0.135 4.135 14 C 0.148 3.852 15 N -0.582 5.582 16 C -0.244 4.244 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.146 3.854 25 C 0.073 3.927 26 H 0.042 0.958 27 O -0.560 6.560 28 C -0.128 4.128 29 C 0.109 3.891 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.400 0.600 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.057 0.943 43 H 0.254 0.746 44 H 0.027 0.973 45 H 0.095 0.905 46 H 0.375 0.625 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 14.087 15.654 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.426 6.426 4 N -0.349 5.349 5 C -0.012 4.012 6 C -0.151 4.151 7 C -0.128 4.128 8 C 0.297 3.703 9 O -0.419 6.419 10 N -0.367 5.367 11 C 0.058 3.942 12 H 0.107 0.893 13 C -0.175 4.175 14 C 0.021 3.979 15 N -0.305 5.305 16 C -0.373 4.373 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.552 5.552 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.018 3.982 25 C 0.012 3.988 26 H 0.060 0.940 27 O -0.365 6.365 28 C -0.166 4.166 29 C -0.014 4.014 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.235 0.765 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.113 0.887 46 H 0.222 0.778 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.620 15.426 14.893 22.440 hybrid contribution -0.665 -1.824 0.126 1.946 sum -7.284 13.601 15.019 21.532 Atomic orbital electron populations 1.21954 0.91783 1.05491 1.04201 1.20833 0.90685 0.82996 0.75334 1.90715 1.70810 1.31070 1.50031 1.48201 1.07128 1.06053 1.73501 1.21655 0.79164 1.02140 0.98253 1.21725 1.01219 0.93084 0.99118 1.21326 0.96419 0.96493 0.98582 1.20518 0.81271 0.82321 0.86149 1.90708 1.34607 1.72997 1.43604 1.46229 1.47094 1.12361 1.31046 1.20996 0.98881 0.87839 0.86466 0.89311 1.22281 1.00466 0.99047 0.95695 1.20896 0.97605 0.85264 0.94158 1.43858 1.62552 1.01670 1.22374 1.19134 1.06787 0.88314 1.23108 0.91736 1.25033 0.95483 0.98629 1.00716 1.70006 1.14482 1.19571 1.51181 0.86349 0.79863 0.81621 0.78823 1.20894 1.21726 1.21053 1.21426 0.93882 0.98775 0.84088 1.22829 0.83428 0.94337 0.98177 0.93975 1.86331 1.25930 1.32766 1.91522 1.21927 0.93927 1.01166 0.99616 1.21780 0.97016 0.83837 0.98784 0.89363 0.89019 0.89226 0.91370 0.88650 0.89727 0.90652 0.88487 0.76529 0.93019 0.91273 0.96282 0.92469 0.93570 0.95505 0.88672 0.77822 0.90605 0.89670 0.90769 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 8.67 36.00 0.31 -0.65 16 2 C 0.51 4.96 7.81 -10.99 -0.09 4.87 16 3 O -0.55 -7.72 16.50 5.56 0.09 -7.62 16 4 N -0.61 -5.00 2.97 -172.80 -0.51 -5.51 16 5 C 0.11 0.95 6.43 -3.71 -0.02 0.93 16 6 C -0.11 -1.10 4.65 -26.61 -0.12 -1.23 16 7 C -0.11 -0.96 2.49 -91.73 -0.23 -1.19 16 8 C 0.51 6.86 7.12 -10.98 -0.08 6.78 16 9 O -0.54 -9.57 15.64 5.56 0.09 -9.49 16 10 N -0.72 -9.54 4.94 -53.77 -0.27 -9.80 16 11 C 0.16 2.74 2.20 -67.89 -0.15 2.59 16 12 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 13 C -0.13 -2.46 5.51 -26.61 -0.15 -2.61 16 14 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 15 N -0.58 -14.05 2.93 -172.32 -0.51 -14.56 16 16 C -0.24 -6.47 9.58 -15.06 -0.14 -6.62 16 17 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 18 C 0.00 -0.02 4.92 -17.43 -0.09 -0.10 16 19 N -0.91 -25.31 11.19 55.49 0.62 -24.69 16 20 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.15 3.22 4.94 -3.71 -0.02 3.20 16 25 C 0.07 1.27 3.38 -26.61 -0.09 1.18 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 O -0.56 -9.24 12.09 -35.23 -0.43 -9.67 16 28 C -0.13 -0.91 5.27 -26.63 -0.14 -1.05 16 29 C 0.11 0.58 6.34 -3.73 -0.02 0.56 16 30 H 0.09 0.30 7.94 -51.93 -0.41 -0.11 16 31 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.09 0.37 7.69 -51.93 -0.40 -0.03 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.98 7.01 -51.93 -0.36 0.61 16 35 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.40 4.48 7.65 -40.82 -0.31 4.17 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.32 7.61 -51.93 -0.40 0.93 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.10 2.31 6.06 -51.93 -0.31 1.99 16 46 H 0.37 5.38 9.08 45.56 0.41 5.80 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.52 7.53 -51.93 -0.39 0.13 16 49 H 0.07 0.30 8.14 -51.94 -0.42 -0.12 16 50 H 0.09 0.32 5.93 -51.93 -0.31 0.01 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -33.98 390.67 -8.59 -42.56 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.48 Total: 7.12 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -1.05 Total: 9.78 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.66 Total: -54.56 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.25 Total: -26.78 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.98 -8.59 -42.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090796911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.257 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds