Wall clock time and date at job start Sat Apr 11 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 119.99753 * 2 1 4 4 N 1.34776 * 120.00292 * 180.02562 * 2 1 3 5 5 C 1.46921 * 120.63406 * 179.97438 * 4 2 1 6 6 C 1.53190 * 108.77645 * 233.58329 * 5 4 2 7 7 C 1.53040 * 109.31205 * 305.36647 * 6 5 4 8 8 C 1.50707 * 109.46175 * 181.38544 * 7 6 5 9 9 O 1.21281 * 119.99700 * 359.96853 * 8 7 6 10 10 N 1.34770 * 120.00236 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00120 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.44516 * 35.03535 * 11 10 8 13 13 C 1.53034 * 109.48448 * 275.08703 * 11 10 8 14 14 C 1.53199 * 109.33860 * 178.64553 * 13 11 10 15 15 N 1.46928 * 108.77144 * 54.61807 * 14 13 11 16 16 C 1.36936 * 120.62660 * 126.37569 * 15 14 13 17 17 H 1.07997 * 120.00033 * 331.84533 * 16 15 14 18 18 C 1.38817 * 119.99895 * 151.85633 * 16 15 14 19 19 N 1.31620 * 120.00101 * 343.06855 * 18 16 15 20 20 Si 1.86805 * 119.99855 * 163.06722 * 18 16 15 21 21 H 1.48502 * 109.46927 * 60.00269 * 20 18 16 22 22 H 1.48498 * 109.46802 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46996 * 299.99929 * 20 18 16 24 24 C 1.46921 * 118.73985 * 306.39061 * 15 14 13 25 25 C 1.53037 * 109.45752 * 155.00047 * 11 10 8 26 26 H 1.08996 * 109.50000 * 301.33208 * 25 11 10 27 27 O 1.42899 * 109.50244 * 61.40368 * 25 11 10 28 28 C 1.53034 * 109.52948 * 61.37078 * 7 6 5 29 29 C 1.46931 * 120.62801 * 359.96934 * 4 2 1 30 30 H 1.09003 * 109.47480 * 239.99586 * 1 2 3 31 31 H 1.08999 * 109.47603 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47215 * 120.00073 * 1 2 3 33 33 H 1.08998 * 109.58716 * 113.79307 * 5 4 2 34 34 H 1.09002 * 109.70075 * 353.43849 * 5 4 2 35 35 H 1.08994 * 109.50070 * 185.40968 * 6 5 4 36 36 H 1.09004 * 109.49745 * 65.31320 * 6 5 4 37 37 H 1.09000 * 109.45717 * 301.35426 * 7 6 5 38 38 H 0.97004 * 120.00110 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.50193 * 58.67878 * 13 11 10 40 40 H 1.09003 * 109.49977 * 298.60835 * 13 11 10 41 41 H 1.08994 * 109.58357 * 294.83390 * 14 13 11 42 42 H 1.08995 * 109.58870 * 174.40429 * 14 13 11 43 43 H 0.97001 * 120.00016 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.59126 * 293.82079 * 24 15 14 45 45 H 1.09002 * 109.70664 * 173.46976 * 24 15 14 46 46 H 0.96695 * 114.00519 * 179.97438 * 27 25 11 47 47 H 1.08998 * 109.50048 * 58.58275 * 28 7 6 48 48 H 1.09003 * 109.49694 * 178.68127 * 28 7 6 49 49 H 1.08989 * 109.59113 * 246.20395 * 29 4 2 50 50 H 1.09001 * 109.58755 * 6.49685 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6500 -1.1833 -0.0011 6 6 4.1331 -2.0495 -1.1686 7 6 3.4893 -3.4345 -1.0716 8 6 3.9886 -4.3004 -2.1995 9 8 4.7807 -3.8537 -3.0020 10 7 3.5549 -5.5710 -2.3165 11 6 4.0398 -6.4126 -3.4132 12 1 5.0805 -6.1677 -3.6257 13 6 3.1923 -6.1615 -4.6625 14 6 3.7234 -7.0179 -5.8164 15 7 3.7611 -8.4219 -5.3848 16 6 3.1430 -9.3955 -6.1232 17 1 2.2830 -9.1500 -6.7286 18 6 3.6217 -10.6982 -6.0934 19 7 4.8339 -10.9437 -5.6431 20 14 2.5455 -12.1027 -6.6923 21 1 2.1926 -11.8827 -8.1179 22 1 3.2833 -13.3842 -6.5565 23 1 1.3049 -12.1576 -5.8780 24 6 4.4741 -8.7612 -4.1458 25 6 3.9346 -7.8853 -3.0107 26 1 4.5202 -8.0585 -2.1079 27 8 2.5666 -8.2154 -2.7625 28 6 1.9680 -3.2993 -1.1677 29 6 1.4603 -2.4476 -0.0004 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3634 1.0276 0.0005 32 1 -0.3634 -0.5139 -0.8900 33 1 4.0112 -1.6018 0.9383 34 1 4.0286 -0.1679 -0.1183 35 1 5.2176 -2.1484 -1.1238 36 1 3.8487 -1.5813 -2.1110 37 1 3.7538 -3.8919 -0.1183 38 1 2.9216 -5.9284 -1.6745 39 1 3.2495 -5.1078 -4.9353 40 1 2.1554 -6.4288 -4.4585 41 1 4.7284 -6.6903 -6.0820 42 1 3.0644 -6.9183 -6.6788 43 1 5.1682 -11.8541 -5.6219 44 1 5.5404 -8.5758 -4.2753 45 1 4.3127 -9.8120 -3.9049 46 1 2.4249 -9.1359 -2.5024 47 1 1.7041 -2.8193 -2.1101 48 1 1.5113 -4.2880 -1.1221 49 1 1.6425 -2.9695 0.9389 50 1 0.3918 -2.2657 -0.1161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090796911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:33 Heat of formation + Delta-G solvation = -131.910638 kcal Electronic energy + Delta-G solvation = -30780.956186 eV Core-core repulsion = 26614.159421 eV Total energy + Delta-G solvation = -4166.796766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.60139 -40.76821 -39.57697 -38.01622 -36.47546 -35.71384 -34.32775 -33.76914 -32.48146 -31.11118 -30.66730 -30.27977 -27.48284 -26.33520 -24.27521 -24.06095 -23.60429 -22.50797 -21.21160 -20.87403 -19.97303 -19.15734 -18.38927 -17.71294 -17.50092 -17.07709 -16.83579 -16.72399 -16.48641 -16.09121 -15.72455 -15.41171 -15.28013 -15.05266 -15.00091 -14.82970 -14.49786 -14.25535 -13.97614 -13.71709 -13.64726 -13.53469 -13.12430 -13.09470 -13.02472 -12.85351 -12.73387 -12.61363 -12.38563 -12.25212 -12.22228 -12.02230 -11.84287 -11.79724 -11.66803 -11.42797 -10.90683 -10.77825 -10.66436 -10.57582 -9.98226 -9.68835 -8.67399 -7.87403 -5.32053 1.50102 1.50716 1.58385 1.61038 1.66781 2.05050 2.21594 2.52294 3.25282 3.40966 3.51933 3.62622 3.72022 3.75772 3.84062 3.89295 4.03438 4.06705 4.27760 4.30900 4.35524 4.41263 4.42060 4.51489 4.60327 4.62436 4.67155 4.73371 4.76670 4.80997 4.83552 4.89033 4.94820 4.98438 5.06633 5.12378 5.15357 5.18653 5.29022 5.43379 5.53746 5.55185 5.56685 5.65367 6.37291 6.42593 6.65032 6.93736 7.15129 7.16538 7.32313 7.82677 8.35949 9.18819 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.002265 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.793826 B =12361.289667 C =12673.551542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.501 3.499 3 O -0.606 6.606 4 N -0.613 5.613 5 C 0.114 3.886 6 C -0.107 4.107 7 C -0.096 4.096 8 C 0.510 3.490 9 O -0.589 6.589 10 N -0.703 5.703 11 C 0.168 3.832 12 H 0.067 0.933 13 C -0.117 4.117 14 C 0.143 3.857 15 N -0.597 5.597 16 C -0.255 4.255 17 H 0.061 0.939 18 C -0.047 4.047 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.282 1.282 22 H -0.295 1.295 23 H -0.274 1.274 24 C 0.149 3.851 25 C 0.094 3.906 26 H 0.070 0.930 27 O -0.558 6.558 28 C -0.124 4.124 29 C 0.108 3.892 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.130 0.870 38 H 0.416 0.584 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.007 0.993 42 H 0.054 0.946 43 H 0.251 0.749 44 H 0.000 1.000 45 H 0.073 0.927 46 H 0.387 0.613 47 H 0.056 0.944 48 H 0.106 0.894 49 H 0.102 0.898 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 13.468 18.057 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.292 3.708 3 O -0.488 6.488 4 N -0.346 5.346 5 C -0.009 4.009 6 C -0.146 4.146 7 C -0.117 4.117 8 C 0.298 3.702 9 O -0.470 6.470 10 N -0.354 5.354 11 C 0.063 3.937 12 H 0.085 0.915 13 C -0.157 4.157 14 C 0.017 3.983 15 N -0.320 5.320 16 C -0.385 4.385 17 H 0.079 0.921 18 C -0.242 4.242 19 N -0.582 5.582 20 Si 0.796 3.204 21 H -0.208 1.208 22 H -0.222 1.222 23 H -0.199 1.199 24 C 0.022 3.978 25 C 0.032 3.968 26 H 0.087 0.913 27 O -0.365 6.365 28 C -0.163 4.163 29 C -0.013 4.013 30 H 0.136 0.864 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.148 0.852 38 H 0.253 0.747 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.025 0.975 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.018 0.982 45 H 0.091 0.909 46 H 0.235 0.765 47 H 0.075 0.925 48 H 0.124 0.876 49 H 0.120 0.880 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.293 14.781 17.334 24.603 hybrid contribution 0.211 -1.620 -0.695 1.775 sum -9.082 13.161 16.639 23.077 Atomic orbital electron populations 1.21975 0.88348 1.05956 1.06383 1.21658 0.92414 0.82480 0.74211 1.90690 1.72188 1.33119 1.52771 1.48352 1.06892 1.06980 1.72394 1.21550 0.80038 1.00653 0.98618 1.21616 1.00834 0.93846 0.98259 1.21341 0.97778 0.94731 0.97829 1.21313 0.80169 0.82209 0.86499 1.90700 1.36766 1.73816 1.45688 1.45968 1.47210 1.12046 1.30207 1.20632 0.97562 0.88359 0.87140 0.91476 1.22033 1.00238 0.98201 0.95196 1.20972 0.97057 0.84713 0.95539 1.44083 1.62564 1.02200 1.23179 1.19385 1.06721 0.89165 1.23261 0.92079 1.25725 0.96495 1.00647 1.01348 1.70159 1.15923 1.19624 1.52529 0.85342 0.78392 0.78393 0.78270 1.20839 1.22152 1.19931 1.21334 0.92563 0.98643 0.85263 1.22449 0.84056 0.93260 0.96989 0.91254 1.86301 1.24963 1.33882 1.91374 1.21947 0.92097 1.02541 0.99681 1.22055 0.98081 0.82076 0.99081 0.86409 0.89627 0.87420 0.88932 0.91026 0.90675 0.93624 0.85190 0.74660 0.92866 0.91345 0.97547 0.92722 0.93998 0.98179 0.90882 0.76456 0.92522 0.87613 0.88003 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 8.67 71.23 0.62 -0.75 16 2 C 0.50 9.03 7.81 87.66 0.68 9.71 16 3 O -0.61 -17.39 16.50 -3.03 -0.05 -17.44 16 4 N -0.61 -8.56 2.97 -819.00 -2.43 -10.99 16 5 C 0.11 1.85 6.43 86.36 0.56 2.40 16 6 C -0.11 -2.03 4.65 30.67 0.14 -1.89 16 7 C -0.10 -1.47 2.49 -11.51 -0.03 -1.50 16 8 C 0.51 12.89 7.12 87.66 0.62 13.52 16 9 O -0.59 -20.96 15.64 -3.03 -0.05 -21.01 16 10 N -0.70 -17.00 4.94 -442.41 -2.18 -19.19 16 11 C 0.17 5.52 2.20 45.01 0.10 5.62 16 12 H 0.07 2.54 7.58 -2.39 -0.02 2.53 16 13 C -0.12 -4.20 5.51 30.67 0.17 -4.03 16 14 C 0.14 6.22 6.52 86.36 0.56 6.78 16 15 N -0.60 -29.18 2.93 -699.09 -2.05 -31.23 16 16 C -0.26 -13.63 9.58 84.03 0.81 -12.83 16 17 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 18 C -0.05 -2.52 4.92 84.86 0.42 -2.10 16 19 N -0.94 -53.07 11.19 21.65 0.24 -52.83 16 20 Si 0.97 43.19 29.59 68.60 2.03 45.22 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.15 6.65 4.94 86.36 0.43 7.08 16 25 C 0.09 3.09 3.38 30.67 0.10 3.19 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 O -0.56 -16.92 12.09 -148.98 -1.80 -18.72 16 28 C -0.12 -1.31 5.27 30.66 0.16 -1.15 16 29 C 0.11 0.67 6.34 86.35 0.55 1.22 16 30 H 0.12 0.28 7.94 -2.39 -0.02 0.26 16 31 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 32 H 0.11 0.51 7.69 -2.39 -0.02 0.49 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.53 7.01 -2.39 -0.02 1.51 16 35 H 0.07 1.55 8.07 -2.39 -0.02 1.53 16 36 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16 37 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.42 7.62 7.65 -92.70 -0.71 6.91 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.50 7.61 -2.39 -0.02 2.48 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.05 2.34 7.93 -2.39 -0.02 2.32 16 43 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 44 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.07 3.59 6.06 -2.39 -0.01 3.58 16 46 H 0.39 10.06 9.08 -74.06 -0.67 9.39 16 47 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.11 0.75 7.53 -2.39 -0.02 0.73 16 49 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 50 H 0.12 0.17 5.93 -2.39 -0.01 0.16 16 Total: -1.00 -77.91 390.67 -0.83 -78.74 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.42 Total: 22.19 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 5.89 Total: 25.27 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -6.43 Total: -114.24 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -1.90 Total: -57.18 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -77.91 -0.83 -78.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090796911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.171 kcal (2) G-P(sol) polarization free energy of solvation -77.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds