Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 119.99730 * 2 1 4 4 N 1.34775 * 120.00155 * 180.02562 * 2 1 3 5 5 C 1.46929 * 120.62846 * 179.97438 * 4 2 1 6 6 C 1.53187 * 108.77529 * 233.58154 * 5 4 2 7 7 C 1.53041 * 109.31539 * 305.37112 * 6 5 4 8 8 C 1.50707 * 109.45899 * 181.38703 * 7 6 5 9 9 O 1.21279 * 119.99619 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99759 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99865 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46513 * 35.02532 * 11 10 8 13 13 C 1.53041 * 109.45051 * 275.05835 * 11 10 8 14 14 C 1.53196 * 109.31720 * 178.62154 * 13 11 10 15 15 N 1.46922 * 108.77371 * 54.63502 * 14 13 11 16 16 C 1.36932 * 120.62903 * 126.37313 * 15 14 13 17 17 H 1.08004 * 120.00006 * 332.62365 * 16 15 14 18 18 C 1.38813 * 120.00006 * 152.62922 * 16 15 14 19 19 N 1.31623 * 120.00374 * 159.36859 * 18 16 15 20 20 Si 1.86801 * 119.99966 * 339.36680 * 18 16 15 21 21 H 1.48510 * 109.46988 * 92.93291 * 20 18 16 22 22 H 1.48499 * 109.47373 * 212.93056 * 20 18 16 23 23 H 1.48502 * 109.47021 * 332.93420 * 20 18 16 24 24 C 1.46928 * 118.74033 * 306.39280 * 15 14 13 25 25 C 1.53040 * 109.46203 * 154.99859 * 11 10 8 26 26 H 1.09001 * 109.49546 * 61.39010 * 25 11 10 27 27 O 1.42896 * 109.49903 * 301.32356 * 25 11 10 28 28 C 1.53029 * 109.54048 * 61.36343 * 7 6 5 29 29 C 1.46922 * 120.62906 * 359.97438 * 4 2 1 30 30 H 1.08998 * 109.46703 * 239.99358 * 1 2 3 31 31 H 1.08996 * 109.47326 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.46932 * 120.00015 * 1 2 3 33 33 H 1.09002 * 109.57929 * 113.80071 * 5 4 2 34 34 H 1.08992 * 109.70168 * 353.44712 * 5 4 2 35 35 H 1.09006 * 109.49788 * 185.41424 * 6 5 4 36 36 H 1.09005 * 109.49481 * 65.32274 * 6 5 4 37 37 H 1.08997 * 109.45695 * 301.35352 * 7 6 5 38 38 H 0.97003 * 120.00690 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.49830 * 298.57355 * 13 11 10 40 40 H 1.09001 * 109.49659 * 58.67027 * 13 11 10 41 41 H 1.08997 * 109.58844 * 174.42743 * 14 13 11 42 42 H 1.09001 * 109.58261 * 294.70648 * 14 13 11 43 43 H 0.96992 * 120.00315 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58760 * 293.82341 * 24 15 14 45 45 H 1.08996 * 109.58786 * 173.39819 * 24 15 14 46 46 H 0.96700 * 114.00518 * 179.97438 * 27 25 11 47 47 H 1.09003 * 109.49881 * 58.58768 * 28 7 6 48 48 H 1.09000 * 109.49992 * 178.68247 * 28 7 6 49 49 H 1.09004 * 109.58789 * 246.19729 * 29 4 2 50 50 H 1.08996 * 109.59232 * 6.48372 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6502 -1.1832 -0.0011 6 6 4.1333 -2.0494 -1.1686 7 6 3.4895 -3.4344 -1.0717 8 6 3.9890 -4.3002 -2.1996 9 8 4.7812 -3.8534 -3.0019 10 7 3.5553 -5.5708 -2.3166 11 6 4.0404 -6.4123 -3.4133 12 1 5.0810 -6.1675 -3.6261 13 6 3.1919 -6.1612 -4.6620 14 6 3.7233 -7.0169 -5.8162 15 7 3.7616 -8.4210 -5.3852 16 6 3.1439 -9.3946 -6.1238 17 1 2.2914 -9.1467 -6.7388 18 6 3.6134 -10.7002 -6.0821 19 7 2.8269 -11.6942 -6.4369 20 14 5.3616 -11.0467 -5.5223 21 1 5.3681 -11.3269 -4.0639 22 1 5.8917 -12.2246 -6.2549 23 1 6.2148 -9.8641 -5.8030 24 6 4.4750 -8.7604 -4.1464 25 6 3.9352 -7.8851 -3.0109 26 1 2.8917 -8.1369 -2.8215 27 8 4.7031 -8.1122 -1.8273 28 6 1.9682 -3.2995 -1.1676 29 6 1.4604 -2.4476 -0.0005 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 4.0112 -1.6019 0.9383 34 1 4.0287 -0.1679 -0.1181 35 1 5.2179 -2.1483 -1.1237 36 1 3.8489 -1.5811 -2.1110 37 1 3.7540 -3.8918 -0.1183 38 1 2.9220 -5.9283 -1.6746 39 1 2.1554 -6.4293 -4.4575 40 1 3.2486 -5.1073 -4.9344 41 1 3.0641 -6.9172 -6.6786 42 1 4.7271 -6.6870 -6.0836 43 1 3.1551 -12.6064 -6.4081 44 1 5.5412 -8.5744 -4.2759 45 1 4.3118 -9.8112 -3.9070 46 1 4.6817 -9.0268 -1.5140 47 1 1.7042 -2.8196 -2.1100 48 1 1.5117 -4.2883 -1.1220 49 1 1.6427 -2.9695 0.9389 50 1 0.3919 -2.2657 -0.1160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090796913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = -101.648650 kcal Electronic energy + Delta-G solvation = -30762.962138 eV Core-core repulsion = 26597.477631 eV Total energy + Delta-G solvation = -4165.484507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79268 -39.84764 -38.43820 -37.19465 -35.57928 -34.56434 -33.49702 -32.32745 -31.78810 -30.19625 -29.79072 -29.21190 -26.43192 -24.88345 -23.63316 -23.12439 -22.19283 -21.50421 -20.24957 -19.81514 -19.32545 -17.77676 -17.17626 -16.95477 -16.70157 -16.34000 -16.17632 -15.86456 -15.18723 -15.05777 -14.48696 -14.39976 -14.21735 -14.07666 -13.86405 -13.64481 -13.58329 -13.21437 -13.05175 -12.91631 -12.61836 -12.54218 -12.52257 -12.37020 -12.18510 -12.05121 -11.66302 -11.46176 -11.13772 -11.06385 -11.02487 -10.94383 -10.57551 -10.41476 -10.15537 -9.97830 -9.76577 -9.67244 -9.54406 -9.05724 -8.87938 -8.73538 -7.13524 -6.06899 -3.44344 2.27038 2.59210 2.68248 3.18667 3.19550 3.40892 3.44304 4.12469 4.23537 4.26312 4.38483 4.41387 4.47486 4.66709 4.79563 4.84959 4.86212 4.94050 4.94581 5.03709 5.09892 5.15309 5.22152 5.28072 5.32675 5.38631 5.42166 5.49663 5.55197 5.64137 5.70073 5.71153 5.74857 5.96326 5.99790 6.13786 6.19098 6.21064 6.33596 6.43991 6.51563 6.64784 6.75816 7.00212 7.57986 7.72490 7.80486 7.88438 8.20775 8.29131 8.79830 9.58400 9.94303 11.08616 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.002359 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.186609 B =11868.730428 C =12110.888072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.615 5.615 5 C 0.110 3.890 6 C -0.113 4.113 7 C -0.106 4.106 8 C 0.516 3.484 9 O -0.541 6.541 10 N -0.714 5.714 11 C 0.161 3.839 12 H 0.088 0.912 13 C -0.140 4.140 14 C 0.148 3.852 15 N -0.602 5.602 16 C -0.263 4.263 17 H 0.089 0.911 18 C 0.024 3.976 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.290 1.290 22 H -0.301 1.301 23 H -0.270 1.270 24 C 0.101 3.899 25 C 0.080 3.920 26 H 0.062 0.938 27 O -0.571 6.571 28 C -0.128 4.128 29 C 0.109 3.891 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.397 0.603 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.036 0.964 45 H 0.079 0.921 46 H 0.377 0.623 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 16.424 16.482 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.426 6.426 4 N -0.349 5.349 5 C -0.012 4.012 6 C -0.151 4.151 7 C -0.128 4.128 8 C 0.302 3.698 9 O -0.418 6.418 10 N -0.364 5.364 11 C 0.057 3.943 12 H 0.106 0.894 13 C -0.180 4.180 14 C 0.021 3.979 15 N -0.327 5.327 16 C -0.391 4.391 17 H 0.106 0.894 18 C -0.175 4.175 19 N -0.547 5.547 20 Si 0.712 3.288 21 H -0.218 1.218 22 H -0.229 1.229 23 H -0.194 1.194 24 C -0.025 4.025 25 C 0.019 3.981 26 H 0.080 0.920 27 O -0.376 6.376 28 C -0.166 4.166 29 C -0.014 4.014 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.231 0.769 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.097 0.903 46 H 0.224 0.776 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.916 17.766 15.773 24.078 hybrid contribution 0.536 -1.474 0.640 1.694 sum -3.380 16.292 16.414 23.373 Atomic orbital electron populations 1.21954 0.91758 1.05520 1.04193 1.20841 0.90689 0.82990 0.75330 1.90718 1.70808 1.31063 1.49984 1.48197 1.07122 1.06038 1.73542 1.21656 0.79151 1.02151 0.98264 1.21726 1.01253 0.93031 0.99131 1.21323 0.96368 0.96490 0.98615 1.20472 0.81106 0.82167 0.86071 1.90707 1.34375 1.73092 1.43589 1.46057 1.47179 1.12344 1.30815 1.20947 0.99710 0.87552 0.86080 0.89389 1.22409 0.99777 1.00386 0.95443 1.20962 0.98572 0.83693 0.94635 1.44326 1.63035 1.03545 1.21751 1.18932 1.08926 0.87387 1.23889 0.89352 1.25305 0.97702 0.95696 0.98813 1.69827 1.34963 0.98989 1.50935 0.86994 0.87506 0.77391 0.76951 1.21751 1.22894 1.19443 1.22028 0.95638 0.98465 0.86418 1.22783 0.94853 0.94704 0.85730 0.91958 1.86434 1.73955 1.33365 1.43851 1.21930 0.93921 1.01072 0.99712 1.21776 0.97026 0.83869 0.98770 0.89356 0.88999 0.89228 0.91344 0.88623 0.89722 0.90638 0.88360 0.76912 0.91559 0.91425 0.91148 0.95376 0.92620 0.94613 0.90344 0.77593 0.90550 0.89805 0.90752 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 8.67 36.01 0.31 -0.59 16 2 C 0.51 4.78 7.81 -10.98 -0.09 4.70 16 3 O -0.55 -7.55 16.50 5.55 0.09 -7.46 16 4 N -0.61 -4.77 2.97 -172.79 -0.51 -5.29 16 5 C 0.11 0.92 6.43 -3.71 -0.02 0.90 16 6 C -0.11 -1.07 4.65 -26.61 -0.12 -1.19 16 7 C -0.11 -0.92 2.49 -91.73 -0.23 -1.14 16 8 C 0.52 6.64 7.12 -10.99 -0.08 6.56 16 9 O -0.54 -9.26 15.64 5.56 0.09 -9.17 16 10 N -0.71 -8.91 4.80 -53.77 -0.26 -9.17 16 11 C 0.16 2.56 2.12 -67.89 -0.14 2.42 16 12 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 13 C -0.14 -2.25 5.65 -26.61 -0.15 -2.40 16 14 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 15 N -0.60 -13.58 2.77 -172.32 -0.48 -14.06 16 16 C -0.26 -7.02 10.03 -15.06 -0.15 -7.17 16 17 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 18 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 19 N -0.90 -26.68 13.97 55.49 0.78 -25.90 16 20 Si 0.88 21.56 24.35 -169.99 -4.14 17.42 16 21 H -0.29 -6.68 6.62 56.52 0.37 -6.30 16 22 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.27 -6.61 6.64 56.52 0.38 -6.24 16 24 C 0.10 2.08 3.83 -3.71 -0.01 2.07 16 25 C 0.08 1.32 3.14 -26.61 -0.08 1.24 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 O -0.57 -8.44 13.16 -35.23 -0.46 -8.90 16 28 C -0.13 -0.81 5.27 -26.63 -0.14 -0.95 16 29 C 0.11 0.53 6.34 -3.73 -0.02 0.51 16 30 H 0.09 0.27 7.94 -51.93 -0.41 -0.14 16 31 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.09 0.34 7.69 -51.93 -0.40 -0.06 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.96 7.01 -51.93 -0.36 0.59 16 35 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.40 3.94 8.00 -40.82 -0.33 3.61 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.33 7.93 -51.93 -0.41 0.91 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.04 0.77 7.08 -51.93 -0.37 0.40 16 45 H 0.08 1.72 4.49 -51.93 -0.23 1.49 16 46 H 0.38 4.33 9.08 45.56 0.41 4.74 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.41 7.53 -51.93 -0.39 0.02 16 49 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.09 0.27 5.93 -51.93 -0.31 -0.04 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -35.34 385.90 -7.58 -42.92 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.45 Total: 5.47 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -1.05 Total: 8.33 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.47 Total: -54.42 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.29 Total: -25.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.34 -7.58 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090796913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.727 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds