Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 119.99730 * 2 1 4 4 N 1.34775 * 120.00155 * 180.02562 * 2 1 3 5 5 C 1.46929 * 120.62846 * 179.97438 * 4 2 1 6 6 C 1.53187 * 108.77529 * 233.58154 * 5 4 2 7 7 C 1.53041 * 109.31539 * 305.37112 * 6 5 4 8 8 C 1.50707 * 109.45899 * 181.38703 * 7 6 5 9 9 O 1.21279 * 119.99619 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99759 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99865 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46513 * 35.02532 * 11 10 8 13 13 C 1.53041 * 109.45051 * 275.05835 * 11 10 8 14 14 C 1.53196 * 109.31720 * 178.62154 * 13 11 10 15 15 N 1.46922 * 108.77371 * 54.63502 * 14 13 11 16 16 C 1.36932 * 120.62903 * 126.37313 * 15 14 13 17 17 H 1.08004 * 120.00006 * 332.62365 * 16 15 14 18 18 C 1.38813 * 120.00006 * 152.62922 * 16 15 14 19 19 N 1.31623 * 120.00374 * 159.36859 * 18 16 15 20 20 Si 1.86801 * 119.99966 * 339.36680 * 18 16 15 21 21 H 1.48510 * 109.46988 * 92.93291 * 20 18 16 22 22 H 1.48499 * 109.47373 * 212.93056 * 20 18 16 23 23 H 1.48502 * 109.47021 * 332.93420 * 20 18 16 24 24 C 1.46928 * 118.74033 * 306.39280 * 15 14 13 25 25 C 1.53040 * 109.46203 * 154.99859 * 11 10 8 26 26 H 1.09001 * 109.49546 * 61.39010 * 25 11 10 27 27 O 1.42896 * 109.49903 * 301.32356 * 25 11 10 28 28 C 1.53029 * 109.54048 * 61.36343 * 7 6 5 29 29 C 1.46922 * 120.62906 * 359.97438 * 4 2 1 30 30 H 1.08998 * 109.46703 * 239.99358 * 1 2 3 31 31 H 1.08996 * 109.47326 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.46932 * 120.00015 * 1 2 3 33 33 H 1.09002 * 109.57929 * 113.80071 * 5 4 2 34 34 H 1.08992 * 109.70168 * 353.44712 * 5 4 2 35 35 H 1.09006 * 109.49788 * 185.41424 * 6 5 4 36 36 H 1.09005 * 109.49481 * 65.32274 * 6 5 4 37 37 H 1.08997 * 109.45695 * 301.35352 * 7 6 5 38 38 H 0.97003 * 120.00690 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.49830 * 298.57355 * 13 11 10 40 40 H 1.09001 * 109.49659 * 58.67027 * 13 11 10 41 41 H 1.08997 * 109.58844 * 174.42743 * 14 13 11 42 42 H 1.09001 * 109.58261 * 294.70648 * 14 13 11 43 43 H 0.96992 * 120.00315 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58760 * 293.82341 * 24 15 14 45 45 H 1.08996 * 109.58786 * 173.39819 * 24 15 14 46 46 H 0.96700 * 114.00518 * 179.97438 * 27 25 11 47 47 H 1.09003 * 109.49881 * 58.58768 * 28 7 6 48 48 H 1.09000 * 109.49992 * 178.68247 * 28 7 6 49 49 H 1.09004 * 109.58789 * 246.19729 * 29 4 2 50 50 H 1.08996 * 109.59232 * 6.48372 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6502 -1.1832 -0.0011 6 6 4.1333 -2.0494 -1.1686 7 6 3.4895 -3.4344 -1.0717 8 6 3.9890 -4.3002 -2.1996 9 8 4.7812 -3.8534 -3.0019 10 7 3.5553 -5.5708 -2.3166 11 6 4.0404 -6.4123 -3.4133 12 1 5.0810 -6.1675 -3.6261 13 6 3.1919 -6.1612 -4.6620 14 6 3.7233 -7.0169 -5.8162 15 7 3.7616 -8.4210 -5.3852 16 6 3.1439 -9.3946 -6.1238 17 1 2.2914 -9.1467 -6.7388 18 6 3.6134 -10.7002 -6.0821 19 7 2.8269 -11.6942 -6.4369 20 14 5.3616 -11.0467 -5.5223 21 1 5.3681 -11.3269 -4.0639 22 1 5.8917 -12.2246 -6.2549 23 1 6.2148 -9.8641 -5.8030 24 6 4.4750 -8.7604 -4.1464 25 6 3.9352 -7.8851 -3.0109 26 1 2.8917 -8.1369 -2.8215 27 8 4.7031 -8.1122 -1.8273 28 6 1.9682 -3.2995 -1.1676 29 6 1.4604 -2.4476 -0.0005 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 4.0112 -1.6019 0.9383 34 1 4.0287 -0.1679 -0.1181 35 1 5.2179 -2.1483 -1.1237 36 1 3.8489 -1.5811 -2.1110 37 1 3.7540 -3.8918 -0.1183 38 1 2.9220 -5.9283 -1.6746 39 1 2.1554 -6.4293 -4.4575 40 1 3.2486 -5.1073 -4.9344 41 1 3.0641 -6.9172 -6.6786 42 1 4.7271 -6.6870 -6.0836 43 1 3.1551 -12.6064 -6.4081 44 1 5.5412 -8.5744 -4.2759 45 1 4.3118 -9.8112 -3.9070 46 1 4.6817 -9.0268 -1.5140 47 1 1.7042 -2.8196 -2.1100 48 1 1.5117 -4.2883 -1.1220 49 1 1.6427 -2.9695 0.9389 50 1 0.3919 -2.2657 -0.1160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090796913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -130.594878 kcal Electronic energy + Delta-G solvation = -30764.217341 eV Core-core repulsion = 26597.477631 eV Total energy + Delta-G solvation = -4166.739710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62333 -40.81503 -39.70762 -38.02756 -37.03323 -35.86991 -34.36628 -33.94346 -32.56743 -31.68227 -30.67955 -30.28641 -27.50843 -26.28061 -24.65763 -24.18559 -23.47547 -22.58030 -21.38218 -21.08142 -19.98620 -19.07192 -18.36114 -18.28583 -17.77149 -17.63052 -16.84715 -16.64913 -16.49085 -16.15414 -16.07814 -15.41373 -15.25680 -15.08827 -14.97289 -14.79744 -14.63068 -14.32202 -14.23927 -14.03170 -13.94872 -13.59473 -13.50755 -13.12109 -13.06403 -13.02044 -12.83371 -12.70727 -12.49996 -12.36730 -12.23145 -12.02002 -11.79900 -11.74649 -11.66889 -11.40290 -11.10724 -10.93972 -10.81938 -10.60988 -10.04881 -9.69210 -9.03123 -8.19809 -5.53515 1.23990 1.41178 1.48504 1.61231 1.67166 2.03713 2.17594 2.36586 2.88357 3.12953 3.32410 3.51872 3.69062 3.71950 3.80154 3.83461 4.00970 4.06004 4.07686 4.23959 4.27056 4.30220 4.34319 4.42323 4.51276 4.56099 4.62925 4.66622 4.69048 4.73846 4.78939 4.81574 4.83544 4.88770 4.91576 4.96362 4.99998 5.11732 5.15231 5.28600 5.30352 5.48920 5.54125 5.81168 6.09829 6.42579 6.60921 6.72214 6.86930 7.16462 7.30779 7.54970 7.94832 8.99437 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.002359 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.186609 B =11868.730428 C =12110.888072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.501 3.499 3 O -0.606 6.606 4 N -0.613 5.613 5 C 0.114 3.886 6 C -0.107 4.107 7 C -0.096 4.096 8 C 0.514 3.486 9 O -0.589 6.589 10 N -0.701 5.701 11 C 0.167 3.833 12 H 0.060 0.940 13 C -0.124 4.124 14 C 0.143 3.857 15 N -0.613 5.613 16 C -0.250 4.250 17 H 0.061 0.939 18 C -0.028 4.028 19 N -0.950 5.950 20 Si 0.939 3.061 21 H -0.265 1.265 22 H -0.311 1.311 23 H -0.273 1.273 24 C 0.096 3.904 25 C 0.099 3.901 26 H 0.075 0.925 27 O -0.569 6.569 28 C -0.124 4.124 29 C 0.107 3.893 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.127 0.873 38 H 0.415 0.585 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.027 0.973 45 H 0.066 0.934 46 H 0.394 0.606 47 H 0.060 0.940 48 H 0.109 0.891 49 H 0.100 0.900 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.059 16.425 19.525 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.292 3.708 3 O -0.488 6.488 4 N -0.346 5.346 5 C -0.009 4.009 6 C -0.145 4.145 7 C -0.117 4.117 8 C 0.301 3.699 9 O -0.469 6.469 10 N -0.352 5.352 11 C 0.062 3.938 12 H 0.078 0.922 13 C -0.164 4.164 14 C 0.017 3.983 15 N -0.339 5.339 16 C -0.379 4.379 17 H 0.078 0.922 18 C -0.223 4.223 19 N -0.596 5.596 20 Si 0.768 3.232 21 H -0.191 1.191 22 H -0.240 1.240 23 H -0.199 1.199 24 C -0.030 4.030 25 C 0.038 3.962 26 H 0.093 0.907 27 O -0.376 6.376 28 C -0.163 4.163 29 C -0.014 4.014 30 H 0.136 0.864 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.145 0.855 38 H 0.252 0.748 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.084 0.916 46 H 0.244 0.756 47 H 0.078 0.922 48 H 0.127 0.873 49 H 0.118 0.882 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.095 17.747 18.882 26.409 hybrid contribution 0.914 -1.431 -0.357 1.735 sum -4.181 16.317 18.525 25.038 Atomic orbital electron populations 1.21976 0.88300 1.05954 1.06415 1.21670 0.92423 0.82472 0.74199 1.90692 1.72198 1.33150 1.52770 1.48348 1.06835 1.07016 1.72411 1.21541 0.80109 1.00642 0.98595 1.21611 1.00721 0.93903 0.98305 1.21330 0.97956 0.94661 0.97747 1.21235 0.80077 0.82179 0.86368 1.90698 1.36562 1.73958 1.45649 1.45828 1.47239 1.11926 1.30179 1.20621 0.98250 0.87912 0.87052 0.92153 1.22200 1.00042 0.99793 0.94387 1.21083 0.98607 0.82503 0.96067 1.44409 1.62984 1.03954 1.22536 1.18872 1.07787 0.88182 1.23071 0.92173 1.25841 1.00733 0.95650 1.00120 1.69937 1.36559 0.99337 1.53723 0.86056 0.82901 0.76369 0.77896 1.19066 1.24015 1.19855 1.22062 0.95082 0.98797 0.87065 1.22377 0.95220 0.93900 0.84719 0.90718 1.86421 1.73638 1.35037 1.42514 1.21961 0.91863 1.02659 0.99768 1.22068 0.98128 0.82081 0.99150 0.86445 0.89672 0.87298 0.89133 0.91056 0.90914 0.93397 0.85550 0.74847 0.90556 0.90906 0.91413 0.95657 0.92765 0.95467 0.91584 0.75615 0.92161 0.87318 0.88183 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 8.67 71.24 0.62 -0.62 16 2 C 0.50 8.68 7.81 87.66 0.68 9.36 16 3 O -0.61 -17.07 16.50 -3.04 -0.05 -17.12 16 4 N -0.61 -8.08 2.97 -818.98 -2.43 -10.52 16 5 C 0.11 1.79 6.43 86.36 0.56 2.34 16 6 C -0.11 -1.95 4.65 30.67 0.14 -1.80 16 7 C -0.10 -1.37 2.49 -11.51 -0.03 -1.40 16 8 C 0.51 12.19 7.12 87.66 0.62 12.81 16 9 O -0.59 -19.99 15.64 -3.03 -0.05 -20.04 16 10 N -0.70 -15.36 4.80 -442.41 -2.12 -17.49 16 11 C 0.17 4.97 2.12 45.02 0.10 5.07 16 12 H 0.06 2.18 7.58 -2.39 -0.02 2.16 16 13 C -0.12 -3.80 5.65 30.67 0.17 -3.63 16 14 C 0.14 5.41 6.52 86.36 0.56 5.98 16 15 N -0.61 -27.37 2.77 -699.09 -1.94 -29.31 16 16 C -0.25 -13.44 10.03 84.03 0.84 -12.60 16 17 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 18 C -0.03 -1.56 5.23 84.86 0.44 -1.12 16 19 N -0.95 -57.00 13.97 21.65 0.30 -56.70 16 20 Si 0.94 44.64 24.35 68.60 1.67 46.31 16 21 H -0.26 -11.37 6.62 99.48 0.66 -10.71 16 22 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 23 H -0.27 -13.01 6.64 99.48 0.66 -12.35 16 24 C 0.10 3.80 3.83 86.36 0.33 4.13 16 25 C 0.10 2.99 3.14 30.67 0.10 3.08 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 O -0.57 -14.80 13.16 -148.98 -1.96 -16.76 16 28 C -0.12 -1.08 5.27 30.66 0.16 -0.92 16 29 C 0.11 0.54 6.34 86.35 0.55 1.09 16 30 H 0.12 0.20 7.94 -2.39 -0.02 0.18 16 31 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.11 0.41 7.69 -2.39 -0.02 0.39 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.49 7.01 -2.39 -0.02 1.47 16 35 H 0.07 1.48 8.07 -2.38 -0.02 1.46 16 36 H 0.05 1.13 8.13 -2.38 -0.02 1.11 16 37 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.41 6.33 8.00 -92.71 -0.74 5.58 16 39 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 42 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.03 1.13 7.08 -2.39 -0.02 1.12 16 45 H 0.07 2.77 4.49 -2.39 -0.01 2.76 16 46 H 0.39 7.51 9.08 -74.06 -0.67 6.84 16 47 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.11 0.47 7.53 -2.39 -0.02 0.45 16 49 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 50 H 0.12 0.03 5.93 -2.39 -0.01 0.01 16 Total: -1.00 -81.12 385.90 -1.28 -82.40 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.55 Total: 17.45 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 5.85 Total: 21.78 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -6.19 Total: -114.01 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -2.06 Total: -53.92 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.67 Total: 46.31 kcal Total: -81.12 -1.28 -82.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090796913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.198 kcal (2) G-P(sol) polarization free energy of solvation -81.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds