Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00057 * 2 1 4 4 H 1.09001 * 110.88635 * 32.42374 * 3 2 1 5 5 C 1.55154 * 111.03811 * 156.33129 * 3 2 1 6 6 C 1.54327 * 102.94403 * 153.59135 * 5 3 2 7 7 H 1.09002 * 109.88367 * 218.39073 * 6 5 3 8 8 C 1.50701 * 110.01207 * 97.29452 * 6 5 3 9 9 O 1.21279 * 120.00230 * 260.40049 * 8 6 5 10 10 N 1.34782 * 119.99650 * 80.39721 * 8 6 5 11 11 C 1.46504 * 119.99643 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.46743 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61231 * 272.49189 * 12 11 10 14 14 C 1.53776 * 87.08572 * 220.02236 * 13 12 11 15 15 N 1.46498 * 113.69369 * 139.99202 * 14 13 12 16 16 C 1.36936 * 119.99925 * 107.46768 * 15 14 13 17 17 H 1.08005 * 120.00232 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00336 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00175 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99738 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47267 * 89.99806 * 20 18 16 22 22 H 1.48500 * 109.47037 * 210.00189 * 20 18 16 23 23 H 1.48496 * 109.47247 * 329.99982 * 20 18 16 24 24 C 1.53781 * 87.07907 * 25.43418 * 14 13 12 25 25 N 1.47022 * 107.27108 * 337.80874 * 6 5 3 26 26 C 1.34778 * 125.65004 * 178.97675 * 25 6 5 27 27 C 1.50697 * 119.99738 * 179.97438 * 26 25 6 28 28 O 1.21279 * 119.99696 * 359.97438 * 26 25 6 29 29 C 1.47424 * 108.70249 * 358.93930 * 25 6 5 30 30 H 1.09004 * 109.47516 * 300.00228 * 1 2 3 31 31 H 1.09006 * 109.47186 * 60.00359 * 1 2 3 32 32 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 33 33 H 1.08999 * 110.72198 * 35.22690 * 5 3 2 34 34 H 1.09000 * 110.72301 * 271.95186 * 5 3 2 35 35 H 0.96996 * 120.00027 * 0.02562 * 10 8 6 36 36 H 1.09003 * 109.47146 * 300.00007 * 11 10 8 37 37 H 1.09000 * 109.47231 * 60.00029 * 11 10 8 38 38 H 1.08991 * 112.85342 * 43.80350 * 12 11 10 39 39 H 1.08999 * 113.62000 * 334.57104 * 13 12 11 40 40 H 1.09009 * 113.61135 * 105.47610 * 13 12 11 41 41 H 1.09006 * 113.61377 * 270.89036 * 14 13 12 42 42 H 0.96996 * 119.99973 * 287.46649 * 15 14 13 43 43 H 0.97003 * 119.99524 * 180.02562 * 19 18 16 44 44 H 1.09005 * 113.61734 * 220.01993 * 24 14 13 45 45 H 1.08996 * 113.69206 * 89.12766 * 24 14 13 46 46 H 1.08998 * 109.47650 * 60.00082 * 27 26 25 47 47 H 1.09005 * 109.46697 * 179.97438 * 27 26 25 48 48 H 1.09002 * 109.47161 * 299.99470 * 27 26 25 49 49 H 1.08998 * 110.36871 * 142.97116 * 29 25 6 50 50 H 1.09001 * 110.36523 * 265.18433 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3829 2.0101 0.5460 5 6 3.4483 1.2748 0.5813 6 6 4.1209 2.4875 -0.0960 7 1 5.1528 2.2451 -0.3501 8 6 4.0868 3.6782 0.8271 9 8 3.2431 4.5367 0.6786 10 7 4.9940 3.7891 1.8178 11 6 4.9605 4.9464 2.7155 12 6 6.0893 4.8286 3.7415 13 6 5.6998 4.0304 4.9969 14 6 6.4893 5.0713 5.8080 15 7 5.8441 5.4484 7.0680 16 6 6.3626 5.0152 8.2591 17 1 7.2473 4.3957 8.2696 18 6 5.7511 5.3720 9.4531 19 7 6.2491 4.9551 10.5979 20 14 4.2213 6.4439 9.4350 21 1 3.0140 5.5823 9.3619 22 1 4.1734 7.2590 10.6754 23 1 4.2604 7.3424 8.2535 24 6 6.2187 6.0564 4.6585 25 7 3.3604 2.7814 -1.3194 26 6 3.6184 3.7836 -2.1829 27 6 2.7530 3.9685 -3.4027 28 8 4.5469 4.5365 -1.9782 29 6 2.2695 1.7979 -1.4457 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9555 0.3497 0.3073 34 1 3.4294 1.3993 1.6640 35 1 5.6689 3.1026 1.9363 36 1 5.0910 5.8600 2.1355 37 1 4.0012 4.9779 3.2321 38 1 7.0336 4.5137 3.2977 39 1 4.6296 4.0361 5.2035 40 1 6.1331 3.0306 5.0304 41 1 7.5433 4.8218 5.9301 42 1 5.0498 6.0050 7.0586 43 1 5.8215 5.2042 11.4322 44 1 7.0709 6.6924 4.4188 45 1 5.2907 6.6169 4.7713 46 1 1.7228 4.1456 -3.0940 47 1 3.1119 4.8229 -3.9766 48 1 2.7982 3.0711 -4.0198 49 1 1.3759 2.2724 -1.8509 50 1 2.5788 0.9679 -2.0811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091166095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -72.700524 kcal Electronic energy + Delta-G solvation = -29862.678114 eV Core-core repulsion = 25698.448892 eV Total energy + Delta-G solvation = -4164.229222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.14543 -39.34959 -38.71858 -38.40665 -36.50118 -34.76684 -33.36942 -32.30767 -30.80134 -30.08947 -29.35889 -27.36910 -27.01352 -25.20495 -24.32465 -23.50202 -22.23411 -21.06730 -20.92543 -19.72528 -19.18793 -18.01067 -17.62403 -17.42829 -16.81258 -16.35968 -15.84860 -15.58060 -15.48386 -15.21164 -15.11423 -14.83910 -14.53147 -14.25200 -13.89425 -13.62928 -13.54453 -13.30069 -13.22597 -13.00469 -12.69207 -12.56162 -12.45817 -12.24094 -12.17765 -11.98398 -11.89008 -11.62119 -11.54834 -11.35168 -10.91022 -10.49100 -10.42524 -10.36102 -10.15085 -10.10159 -9.99719 -9.82797 -9.56072 -9.07864 -9.04010 -8.89912 -7.27896 -5.79392 -3.14814 2.16806 2.38982 2.57285 3.06264 3.24369 3.36690 3.40033 3.44554 3.82770 3.95523 4.39077 4.42037 4.53251 4.57305 4.62807 4.76569 4.81128 4.87387 4.89087 4.89159 4.90073 4.97277 5.04196 5.11930 5.19730 5.22133 5.30699 5.36125 5.39870 5.41663 5.42769 5.64105 5.71974 5.74443 5.78915 5.89026 6.18253 6.18684 6.22959 6.38224 6.49690 6.57964 6.68604 6.97588 7.04027 7.39151 7.82325 7.97121 8.11856 8.40513 9.18350 9.91177 10.11091 11.38820 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.002258 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.077290 B =12396.223812 C =13452.291124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.076 3.924 4 H 0.085 0.915 5 C -0.117 4.117 6 C 0.120 3.880 7 H 0.103 0.897 8 C 0.508 3.492 9 O -0.529 6.529 10 N -0.721 5.721 11 C 0.134 3.866 12 C -0.126 4.126 13 C -0.160 4.160 14 C 0.172 3.828 15 N -0.737 5.737 16 C -0.247 4.247 17 H 0.091 0.909 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.146 4.146 25 N -0.602 5.602 26 C 0.533 3.467 27 C -0.167 4.167 28 O -0.531 6.531 29 C 0.082 3.918 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 -10.670 -30.045 33.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.289 6.289 3 C 0.017 3.983 4 H 0.103 0.897 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.121 0.879 8 C 0.292 3.708 9 O -0.405 6.405 10 N -0.373 5.373 11 C 0.011 3.989 12 C -0.146 4.146 13 C -0.201 4.201 14 C 0.061 3.939 15 N -0.377 5.377 16 C -0.377 4.377 17 H 0.109 0.891 18 C -0.192 4.192 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.185 4.185 25 N -0.338 5.338 26 C 0.323 3.677 27 C -0.226 4.226 28 O -0.407 6.407 29 C -0.041 4.041 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.235 0.765 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.728 -9.802 -29.880 32.916 hybrid contribution -1.087 0.620 0.191 1.266 sum -10.815 -9.181 -29.688 32.904 Atomic orbital electron populations 1.22875 0.80324 1.03230 1.00444 1.87918 1.20291 1.25969 1.94756 1.23237 0.94959 0.85536 0.94615 0.89681 1.22682 0.94318 0.97041 1.01426 1.21499 0.98464 0.93263 0.85540 0.87924 1.20646 0.81521 0.87520 0.81151 1.90690 1.37082 1.41533 1.71175 1.45970 1.33393 1.25989 1.31963 1.21415 0.99162 0.87824 0.90507 1.22640 0.97774 1.00114 0.94044 1.23907 1.01654 0.99324 0.95201 1.21503 0.96186 0.92255 0.83996 1.42765 1.31971 1.60905 1.02044 1.19140 1.09807 1.26178 0.82615 0.89127 1.24698 0.98892 1.00357 0.95214 1.69707 1.41839 1.49704 0.96803 0.86554 0.84240 0.80865 0.76918 1.21080 1.21692 1.20266 1.23470 1.01832 0.96395 0.96836 1.48108 1.31890 1.31004 1.22827 1.20493 0.85119 0.78319 0.83751 1.21883 1.00554 1.04708 0.95465 1.90754 1.31396 1.42961 1.75553 1.22794 0.90528 0.92282 0.98517 0.93512 0.93773 0.89141 0.87916 0.88545 0.76547 0.91733 0.91429 0.89023 0.90506 0.92236 0.89806 0.80464 0.93037 0.91626 0.90389 0.89344 0.88755 0.89407 0.90069 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.89 101.05 1.10 1.23 16 2 O -0.37 -2.64 10.52 -35.23 -0.37 -3.01 16 3 C 0.08 0.53 3.49 -24.58 -0.09 0.45 16 4 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 5 C -0.12 -0.81 6.22 -24.90 -0.15 -0.96 16 6 C 0.12 1.11 3.29 -68.10 -0.22 0.89 16 7 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 8 C 0.51 6.48 6.20 -10.98 -0.07 6.41 16 9 O -0.53 -8.90 15.94 5.56 0.09 -8.82 16 10 N -0.72 -8.12 5.56 -60.29 -0.33 -8.46 16 11 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 12 C -0.13 -1.62 3.76 -89.81 -0.34 -1.96 16 13 C -0.16 -2.47 7.43 -25.92 -0.19 -2.66 16 14 C 0.17 3.18 4.48 -67.12 -0.30 2.88 16 15 N -0.74 -17.28 5.21 -52.64 -0.27 -17.56 16 16 C -0.25 -6.93 10.45 -15.06 -0.16 -7.09 16 17 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 19 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 20 Si 0.88 22.18 27.74 -169.99 -4.71 17.46 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 24 C -0.15 -2.21 7.39 -25.92 -0.19 -2.40 16 25 N -0.60 -5.64 2.79 -164.32 -0.46 -6.10 16 26 C 0.53 6.00 7.29 -10.99 -0.08 5.92 16 27 C -0.17 -1.09 9.33 36.00 0.34 -0.75 16 28 O -0.53 -8.44 16.69 5.56 0.09 -8.35 16 29 C 0.08 0.51 6.43 -2.53 -0.02 0.50 16 30 H 0.05 0.22 8.11 -51.93 -0.42 -0.20 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.69 7.83 -51.93 -0.41 0.28 16 35 H 0.40 3.39 8.47 -40.82 -0.35 3.05 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 40 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 42 H 0.36 8.41 5.79 -40.82 -0.24 8.18 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 46 H 0.09 0.46 7.85 -51.93 -0.41 0.06 16 47 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 48 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.39 7.48 -51.93 -0.39 0.00 16 50 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 408.04 15.07 6.15 6.15 Total: -1.00 -37.69 408.04 -8.05 -45.74 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.51 Total: 7.21 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.49 Total: 4.19 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.29 Total: -60.59 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.19 Total: -20.17 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.69 -8.05 -45.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091166095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.956 kcal (2) G-P(sol) polarization free energy of solvation -37.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds