Wall clock time and date at job start Sat Apr 11 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00057 * 2 1 4 4 H 1.09001 * 110.88635 * 32.42374 * 3 2 1 5 5 C 1.55154 * 111.03811 * 156.33129 * 3 2 1 6 6 C 1.54327 * 102.94403 * 153.59135 * 5 3 2 7 7 H 1.09002 * 109.88367 * 218.39073 * 6 5 3 8 8 C 1.50701 * 110.01207 * 97.29452 * 6 5 3 9 9 O 1.21279 * 120.00230 * 260.40049 * 8 6 5 10 10 N 1.34782 * 119.99650 * 80.39721 * 8 6 5 11 11 C 1.46504 * 119.99643 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.46743 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61231 * 272.49189 * 12 11 10 14 14 C 1.53776 * 87.08572 * 220.02236 * 13 12 11 15 15 N 1.46498 * 113.69369 * 139.99202 * 14 13 12 16 16 C 1.36936 * 119.99925 * 107.46768 * 15 14 13 17 17 H 1.08005 * 120.00232 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00336 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00175 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99738 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47267 * 89.99806 * 20 18 16 22 22 H 1.48500 * 109.47037 * 210.00189 * 20 18 16 23 23 H 1.48496 * 109.47247 * 329.99982 * 20 18 16 24 24 C 1.53781 * 87.07907 * 25.43418 * 14 13 12 25 25 N 1.47022 * 107.27108 * 337.80874 * 6 5 3 26 26 C 1.34778 * 125.65004 * 178.97675 * 25 6 5 27 27 C 1.50697 * 119.99738 * 179.97438 * 26 25 6 28 28 O 1.21279 * 119.99696 * 359.97438 * 26 25 6 29 29 C 1.47424 * 108.70249 * 358.93930 * 25 6 5 30 30 H 1.09004 * 109.47516 * 300.00228 * 1 2 3 31 31 H 1.09006 * 109.47186 * 60.00359 * 1 2 3 32 32 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 33 33 H 1.08999 * 110.72198 * 35.22690 * 5 3 2 34 34 H 1.09000 * 110.72301 * 271.95186 * 5 3 2 35 35 H 0.96996 * 120.00027 * 0.02562 * 10 8 6 36 36 H 1.09003 * 109.47146 * 300.00007 * 11 10 8 37 37 H 1.09000 * 109.47231 * 60.00029 * 11 10 8 38 38 H 1.08991 * 112.85342 * 43.80350 * 12 11 10 39 39 H 1.08999 * 113.62000 * 334.57104 * 13 12 11 40 40 H 1.09009 * 113.61135 * 105.47610 * 13 12 11 41 41 H 1.09006 * 113.61377 * 270.89036 * 14 13 12 42 42 H 0.96996 * 119.99973 * 287.46649 * 15 14 13 43 43 H 0.97003 * 119.99524 * 180.02562 * 19 18 16 44 44 H 1.09005 * 113.61734 * 220.01993 * 24 14 13 45 45 H 1.08996 * 113.69206 * 89.12766 * 24 14 13 46 46 H 1.08998 * 109.47650 * 60.00082 * 27 26 25 47 47 H 1.09005 * 109.46697 * 179.97438 * 27 26 25 48 48 H 1.09002 * 109.47161 * 299.99470 * 27 26 25 49 49 H 1.08998 * 110.36871 * 142.97116 * 29 25 6 50 50 H 1.09001 * 110.36523 * 265.18433 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3829 2.0101 0.5460 5 6 3.4483 1.2748 0.5813 6 6 4.1209 2.4875 -0.0960 7 1 5.1528 2.2451 -0.3501 8 6 4.0868 3.6782 0.8271 9 8 3.2431 4.5367 0.6786 10 7 4.9940 3.7891 1.8178 11 6 4.9605 4.9464 2.7155 12 6 6.0893 4.8286 3.7415 13 6 5.6998 4.0304 4.9969 14 6 6.4893 5.0713 5.8080 15 7 5.8441 5.4484 7.0680 16 6 6.3626 5.0152 8.2591 17 1 7.2473 4.3957 8.2696 18 6 5.7511 5.3720 9.4531 19 7 6.2491 4.9551 10.5979 20 14 4.2213 6.4439 9.4350 21 1 3.0140 5.5823 9.3619 22 1 4.1734 7.2590 10.6754 23 1 4.2604 7.3424 8.2535 24 6 6.2187 6.0564 4.6585 25 7 3.3604 2.7814 -1.3194 26 6 3.6184 3.7836 -2.1829 27 6 2.7530 3.9685 -3.4027 28 8 4.5469 4.5365 -1.9782 29 6 2.2695 1.7979 -1.4457 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9555 0.3497 0.3073 34 1 3.4294 1.3993 1.6640 35 1 5.6689 3.1026 1.9363 36 1 5.0910 5.8600 2.1355 37 1 4.0012 4.9779 3.2321 38 1 7.0336 4.5137 3.2977 39 1 4.6296 4.0361 5.2035 40 1 6.1331 3.0306 5.0304 41 1 7.5433 4.8218 5.9301 42 1 5.0498 6.0050 7.0586 43 1 5.8215 5.2042 11.4322 44 1 7.0709 6.6924 4.4188 45 1 5.2907 6.6169 4.7713 46 1 1.7228 4.1456 -3.0940 47 1 3.1119 4.8229 -3.9766 48 1 2.7982 3.0711 -4.0198 49 1 1.3759 2.2724 -1.8509 50 1 2.5788 0.9679 -2.0811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091166095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:42 Heat of formation + Delta-G solvation = -101.850799 kcal Electronic energy + Delta-G solvation = -29863.942165 eV Core-core repulsion = 25698.448892 eV Total energy + Delta-G solvation = -4165.493273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92747 -40.44986 -39.62779 -39.29844 -37.19226 -36.13563 -35.06525 -33.10351 -32.68055 -30.74664 -30.03760 -28.49440 -27.40897 -26.49235 -25.71142 -24.66872 -22.97956 -22.41046 -21.78826 -20.92659 -20.24886 -19.37031 -18.75204 -18.35378 -17.56774 -17.24203 -16.77201 -16.52586 -16.42998 -16.24558 -16.01772 -15.83616 -15.75749 -15.51526 -14.93087 -14.66963 -14.52701 -14.31482 -14.05500 -13.95202 -13.81644 -13.60441 -13.28780 -13.27415 -13.15216 -13.06878 -13.03463 -12.70220 -12.66281 -12.35960 -12.17400 -11.97621 -11.88707 -11.71775 -11.60109 -11.18593 -11.14483 -11.00064 -10.86738 -10.65299 -10.12159 -9.81400 -9.27772 -8.03441 -5.35779 1.36637 1.38042 1.38772 1.46177 1.56172 1.79910 2.20967 2.46922 2.71017 3.26725 3.27712 3.38638 3.55560 3.59362 3.71243 3.80471 3.86146 3.98562 4.06564 4.07254 4.22686 4.25940 4.35112 4.41371 4.42629 4.51144 4.55967 4.56654 4.60356 4.70957 4.74454 4.78095 4.86471 4.91042 4.92595 4.94426 4.97022 4.99845 5.10133 5.20257 5.30109 5.41069 5.63469 5.77617 6.12454 6.22505 6.33347 6.50407 7.04680 7.07162 7.19199 7.85331 8.03169 9.18058 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.002258 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.077290 B =12396.223812 C =13452.291124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.381 6.381 3 C 0.076 3.924 4 H 0.070 0.930 5 C -0.109 4.109 6 C 0.119 3.881 7 H 0.117 0.883 8 C 0.502 3.498 9 O -0.575 6.575 10 N -0.712 5.712 11 C 0.141 3.859 12 C -0.098 4.098 13 C -0.150 4.150 14 C 0.147 3.853 15 N -0.744 5.744 16 C -0.230 4.230 17 H 0.060 0.940 18 C -0.066 4.066 19 N -0.984 5.984 20 Si 0.952 3.048 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.254 1.254 24 C -0.139 4.139 25 N -0.602 5.602 26 C 0.520 3.480 27 C -0.160 4.160 28 O -0.590 6.590 29 C 0.083 3.917 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.416 0.584 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.364 0.636 43 H 0.257 0.743 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.119 0.881 49 H 0.098 0.902 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.112 -11.689 -32.871 36.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.299 6.299 3 C 0.017 3.983 4 H 0.088 0.912 5 C -0.147 4.147 6 C 0.011 3.989 7 H 0.135 0.865 8 C 0.287 3.713 9 O -0.454 6.454 10 N -0.365 5.365 11 C 0.017 3.983 12 C -0.117 4.117 13 C -0.191 4.191 14 C 0.038 3.962 15 N -0.385 5.385 16 C -0.361 4.361 17 H 0.078 0.922 18 C -0.257 4.257 19 N -0.634 5.634 20 Si 0.780 3.220 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.179 1.179 24 C -0.178 4.178 25 N -0.337 5.337 26 C 0.312 3.688 27 C -0.219 4.219 28 O -0.470 6.470 29 C -0.039 4.039 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.111 0.889 35 H 0.253 0.747 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.198 0.802 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.122 0.878 47 H 0.108 0.892 48 H 0.137 0.863 49 H 0.116 0.884 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.961 -10.879 -32.774 36.230 hybrid contribution -0.652 0.849 1.031 1.486 sum -11.613 -10.030 -31.744 35.258 Atomic orbital electron populations 1.23042 0.79235 1.04239 1.00971 1.87897 1.21512 1.25675 1.94847 1.23153 0.94710 0.85432 0.95031 0.91221 1.22688 0.94365 0.96677 1.01009 1.21623 0.99769 0.92355 0.85136 0.86547 1.21337 0.80702 0.87946 0.81276 1.90662 1.38944 1.43421 1.72414 1.45874 1.33531 1.25782 1.31279 1.21190 0.98428 0.88200 0.90446 1.22465 0.98671 0.97738 0.92805 1.23713 1.00522 0.99319 0.95501 1.21913 0.96136 0.95063 0.83068 1.42799 1.32332 1.61186 1.02200 1.19132 1.08245 1.24316 0.84446 0.92153 1.25495 1.02656 1.02722 0.94856 1.69882 1.43955 1.52090 0.97501 0.85443 0.80055 0.79200 0.77295 1.20602 1.22299 1.17893 1.23376 1.02239 0.96789 0.95393 1.48259 1.32335 1.30942 1.22202 1.21373 0.84832 0.77700 0.84861 1.21916 1.00136 1.06067 0.93743 1.90716 1.34040 1.45132 1.77126 1.22981 0.90306 0.92248 0.98367 0.93981 0.92312 0.87933 0.85790 0.88884 0.74712 0.92797 0.92855 0.86429 0.91524 0.91147 0.90323 0.80240 0.93404 0.90279 0.90686 0.87816 0.89246 0.86268 0.88401 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.89 113.37 1.23 1.39 16 2 O -0.38 -4.51 10.52 -148.98 -1.57 -6.07 16 3 C 0.08 0.92 3.49 31.99 0.11 1.03 16 4 H 0.07 1.05 7.90 -2.39 -0.02 1.04 16 5 C -0.11 -1.28 6.22 31.78 0.20 -1.08 16 6 C 0.12 2.01 3.29 44.60 0.15 2.16 16 7 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 8 C 0.50 12.43 6.20 87.66 0.54 12.97 16 9 O -0.58 -19.47 15.94 -3.02 -0.05 -19.52 16 10 N -0.71 -15.01 5.56 -463.05 -2.57 -17.58 16 11 C 0.14 3.50 5.51 86.38 0.48 3.98 16 12 C -0.10 -2.28 3.76 -10.27 -0.04 -2.32 16 13 C -0.15 -4.38 7.43 31.12 0.23 -4.15 16 14 C 0.15 5.27 4.48 45.52 0.20 5.48 16 15 N -0.74 -34.50 5.21 -320.45 -1.67 -36.17 16 16 C -0.23 -13.09 10.45 84.03 0.88 -12.21 16 17 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 19 N -0.98 -63.36 13.97 21.65 0.30 -63.06 16 20 Si 0.95 46.12 27.74 68.60 1.90 48.03 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.25 -11.21 6.52 99.48 0.65 -10.56 16 24 C -0.14 -3.94 7.39 31.12 0.23 -3.71 16 25 N -0.60 -10.26 2.79 -792.17 -2.21 -12.47 16 26 C 0.52 11.19 7.29 87.66 0.64 11.82 16 27 C -0.16 -1.75 9.33 71.24 0.66 -1.08 16 28 O -0.59 -18.91 16.69 -3.03 -0.05 -18.96 16 29 C 0.08 0.81 6.43 86.86 0.56 1.36 16 30 H 0.04 0.35 8.11 -2.38 -0.02 0.33 16 31 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.17 7.83 -2.39 -0.02 1.15 16 35 H 0.42 6.07 8.47 -92.71 -0.79 5.28 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.50 7.84 -2.39 -0.02 1.48 16 38 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.07 2.12 7.90 -2.39 -0.02 2.10 16 40 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.08 2.89 8.10 -2.38 -0.02 2.87 16 42 H 0.36 16.44 5.79 -92.71 -0.54 15.91 16 43 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 44 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 46 H 0.10 0.82 7.85 -2.39 -0.02 0.81 16 47 H 0.09 1.08 8.12 -2.38 -0.02 1.06 16 48 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.10 0.64 7.48 -2.39 -0.02 0.62 16 50 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -85.13 408.04 0.19 -84.94 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.44 Total: 28.67 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.54 Total: 12.19 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -6.15 Total: -129.28 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.67 Total: -44.55 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.03 kcal Total: -85.13 0.19 -84.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091166095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.912 kcal (2) G-P(sol) polarization free energy of solvation -85.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds