Wall clock time and date at job start Sat Apr 11 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 120.00252 * 2 1 4 4 N 1.34781 * 119.99701 * 180.02562 * 2 1 3 5 5 C 1.47066 * 136.05575 * 359.62757 * 4 2 1 6 6 C 1.53240 * 88.08065 * 207.20808 * 5 4 2 7 7 C 1.50702 * 114.32463 * 220.47060 * 6 5 4 8 8 O 1.21285 * 120.00303 * 93.75804 * 7 6 5 9 9 N 1.34773 * 120.00233 * 273.76260 * 7 6 5 10 10 C 1.46929 * 120.63019 * 359.71637 * 9 7 6 11 11 C 1.53625 * 108.54293 * 126.37408 * 10 9 7 12 12 C 1.53038 * 109.24226 * 54.85580 * 11 10 9 13 13 N 1.46503 * 109.45694 * 178.48945 * 12 11 10 14 14 C 1.36938 * 119.99828 * 60.07264 * 13 12 11 15 15 H 1.08001 * 119.99725 * 326.28755 * 14 13 12 16 16 C 1.38807 * 120.00014 * 146.29787 * 14 13 12 17 17 N 1.31626 * 119.99918 * 337.22031 * 16 14 13 18 18 Si 1.86801 * 120.00311 * 157.22533 * 16 14 13 19 19 H 1.48498 * 109.47400 * 89.99519 * 18 16 14 20 20 H 1.48500 * 109.47269 * 209.99819 * 18 16 14 21 21 H 1.48499 * 109.46932 * 329.99610 * 18 16 14 22 22 C 1.46496 * 120.00030 * 240.06528 * 13 12 11 23 23 C 1.53009 * 109.46970 * 84.41837 * 22 13 12 24 24 O 1.42899 * 109.46928 * 64.99591 * 23 22 13 25 25 C 1.53038 * 109.53767 * 298.51226 * 12 11 10 26 26 C 1.46931 * 120.63197 * 180.02562 * 9 7 6 27 27 C 1.47069 * 136.05741 * 180.02562 * 4 2 1 28 28 H 1.08994 * 109.47547 * 269.99983 * 1 2 3 29 29 H 1.08995 * 109.47217 * 149.99342 * 1 2 3 30 30 H 1.09008 * 109.46732 * 29.99711 * 1 2 3 31 31 H 1.08997 * 113.47142 * 321.93596 * 5 4 2 32 32 H 1.08999 * 113.47064 * 92.38295 * 5 4 2 33 33 H 1.08998 * 114.02075 * 87.72229 * 6 5 4 34 34 H 1.09002 * 109.58594 * 246.20917 * 10 9 7 35 35 H 1.08995 * 109.58603 * 6.62884 * 10 9 7 36 36 H 1.08998 * 109.62839 * 294.86370 * 11 10 9 37 37 H 1.09002 * 109.42700 * 174.72822 * 11 10 9 38 38 H 1.08997 * 109.44808 * 58.52967 * 12 11 10 39 39 H 0.96996 * 119.99917 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47316 * 204.41403 * 22 13 12 41 41 H 1.08999 * 109.47423 * 324.42177 * 22 13 12 42 42 H 1.08994 * 109.47297 * 185.00128 * 23 22 13 43 43 H 1.09000 * 109.46913 * 305.00175 * 23 22 13 44 44 H 0.96704 * 113.99848 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.49868 * 301.41204 * 25 12 11 46 46 H 1.09006 * 109.52183 * 181.33661 * 25 12 11 47 47 H 1.08995 * 109.58614 * 353.37004 * 26 9 7 48 48 H 1.09000 * 109.58620 * 113.65126 * 26 9 7 49 49 H 1.09001 * 113.46411 * 267.61786 * 27 4 2 50 50 H 1.08992 * 113.46959 * 38.05675 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.8264 -2.5946 0.0055 6 6 3.1646 -2.8711 0.6990 7 6 3.8764 -4.1043 0.2054 8 8 4.7081 -4.0140 -0.6728 9 7 3.5888 -5.3077 0.7397 10 6 2.5881 -5.4325 1.8084 11 6 1.5503 -6.4833 1.3856 12 6 2.2676 -7.7905 1.0411 13 7 1.2792 -8.8069 0.6719 14 6 0.4465 -8.5965 -0.3947 15 1 0.1040 -7.5982 -0.6237 16 6 0.0424 -9.6664 -1.1813 17 7 0.7625 -10.7677 -1.2146 18 14 -1.5232 -9.5433 -2.1929 19 1 -1.2030 -8.9976 -3.5363 20 1 -2.1264 -10.8925 -2.3376 21 1 -2.4849 -8.6420 -1.5088 22 6 1.1817 -10.0483 1.4436 23 6 0.2918 -9.8196 2.6671 24 8 -1.0416 -9.5345 2.2396 25 6 3.2215 -7.5568 -0.1326 26 6 4.2747 -6.5190 0.2693 27 6 3.5941 -1.5741 -0.0002 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 -0.8899 -0.5139 30 1 -0.3633 0.8901 -0.5138 31 1 0.9613 -2.8244 0.6274 32 1 1.7565 -3.0287 -0.9919 33 1 3.1240 -2.8004 1.7859 34 1 3.0761 -5.7472 2.7309 35 1 2.0962 -4.4721 1.9622 36 1 1.0034 -6.1272 0.5126 37 1 0.8539 -6.6557 2.2063 38 1 2.8342 -8.1327 1.9070 39 1 0.4803 -11.5152 -1.7645 40 1 0.7485 -10.8305 0.8203 41 1 2.1764 -10.3525 1.7696 42 1 0.2906 -10.7154 3.2880 43 1 0.6762 -8.9783 3.2438 44 1 -1.6620 -9.3779 2.9646 45 1 2.6589 -7.1908 -0.9914 46 1 3.7147 -8.4934 -0.3932 47 1 4.8958 -6.2757 -0.5926 48 1 4.8990 -6.9189 1.0683 49 1 4.0001 -1.7335 -0.9992 50 1 4.2288 -0.9382 0.6167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098356125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:46 Heat of formation + Delta-G solvation = -75.506472 kcal Electronic energy + Delta-G solvation = -31118.997568 eV Core-core repulsion = 26954.646671 eV Total energy + Delta-G solvation = -4164.350897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.08536 -40.57409 -39.24071 -38.43137 -37.55276 -36.17908 -33.77790 -32.60058 -31.88698 -31.74198 -29.74389 -29.23803 -27.02880 -26.63907 -25.24312 -24.45231 -23.42635 -22.17512 -21.34611 -20.12988 -19.81835 -18.74664 -18.12474 -18.03041 -17.90256 -17.20019 -16.83680 -16.66346 -16.18130 -16.04657 -15.96533 -15.56214 -15.31259 -14.95944 -14.55112 -14.50226 -14.21597 -14.06141 -14.02062 -13.74170 -13.53561 -13.39434 -13.30568 -13.15050 -12.99451 -12.95825 -12.91445 -12.68239 -12.48030 -12.33000 -12.03796 -11.84191 -11.78206 -11.56815 -11.43298 -11.19064 -11.04372 -10.74824 -10.55611 -10.31365 -9.89612 -9.58663 -8.43446 -7.69883 -5.20469 1.46445 1.47577 1.51234 1.52179 1.58567 1.67811 2.12988 2.61044 3.12338 3.41391 3.46427 3.55171 3.63896 3.86563 3.89718 4.03708 4.10002 4.23158 4.29779 4.32205 4.41976 4.46107 4.47894 4.53819 4.56767 4.63018 4.64121 4.68914 4.70328 4.79085 4.87768 4.91310 4.95114 4.96368 5.01316 5.06869 5.16327 5.20069 5.30392 5.52943 5.68160 5.73417 5.81957 5.92760 6.46227 6.58760 6.60872 7.01162 7.14922 7.27712 7.34446 8.05670 8.51430 9.28435 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012321 B = 0.003133 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.007785 B = 8933.873030 C = 9592.005082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.534 3.466 3 O -0.600 6.600 4 N -0.649 5.649 5 C 0.123 3.877 6 C -0.136 4.136 7 C 0.526 3.474 8 O -0.585 6.585 9 N -0.599 5.599 10 C 0.113 3.887 11 C -0.128 4.128 12 C 0.170 3.830 13 N -0.584 5.584 14 C -0.213 4.213 15 H 0.052 0.948 16 C -0.040 4.040 17 N -0.924 5.924 18 Si 0.939 3.061 19 H -0.294 1.294 20 H -0.302 1.302 21 H -0.274 1.274 22 C 0.134 3.866 23 C 0.070 3.930 24 O -0.576 6.576 25 C -0.122 4.122 26 C 0.122 3.878 27 C 0.115 3.885 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.242 0.758 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.374 0.626 45 H 0.035 0.965 46 H 0.045 0.955 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 12.667 12.541 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.328 3.672 3 O -0.482 6.482 4 N -0.384 5.384 5 C 0.000 4.000 6 C -0.157 4.157 7 C 0.315 3.685 8 O -0.465 6.465 9 N -0.330 5.330 10 C -0.009 4.009 11 C -0.168 4.168 12 C 0.064 3.936 13 N -0.304 5.304 14 C -0.344 4.344 15 H 0.069 0.931 16 C -0.235 4.235 17 N -0.571 5.571 18 Si 0.770 3.230 19 H -0.222 1.222 20 H -0.229 1.229 21 H -0.199 1.199 22 C 0.007 3.993 23 C -0.009 4.009 24 O -0.381 6.381 25 C -0.162 4.162 26 C -0.001 4.001 27 C -0.008 4.008 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.102 0.898 33 H 0.179 0.821 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.221 0.779 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.048 13.236 11.410 17.506 hybrid contribution -0.842 -0.662 -0.750 1.307 sum 0.206 12.574 10.660 16.486 Atomic orbital electron populations 1.21875 0.87368 1.05956 1.06608 1.21248 0.91789 0.80447 0.73751 1.90705 1.72201 1.32124 1.53169 1.49743 1.09582 1.06202 1.72834 1.22973 0.97483 0.77822 1.01687 1.23051 0.97427 0.91208 1.04046 1.20502 0.82102 0.84787 0.81158 1.90694 1.36361 1.86527 1.32938 1.48214 1.40525 1.06198 1.38070 1.22132 0.88608 1.00989 0.89216 1.22258 0.97915 0.95316 1.01300 1.20566 0.88995 0.89643 0.94418 1.43946 1.37955 1.17242 1.31219 1.18846 1.19226 0.92924 1.03355 0.93055 1.25425 1.00863 0.98048 0.99168 1.70092 1.37806 1.06480 1.42748 0.85720 0.82628 0.76114 0.78561 1.22199 1.22877 1.19950 1.21003 0.95398 0.91164 0.91703 1.22850 0.83363 0.97687 0.97023 1.86777 1.20332 1.93774 1.37183 1.22133 0.97070 0.97145 0.99872 1.21536 0.94294 0.84073 1.00185 1.22810 0.84585 0.92186 1.01207 0.86432 0.88334 0.88533 0.85599 0.89792 0.82061 0.88912 0.86897 0.93417 0.90533 0.91630 0.94834 0.91755 0.93947 0.94176 0.93572 0.77933 0.94641 0.93643 0.91308 0.89684 0.90125 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.18 71.24 0.73 -1.18 16 2 C 0.53 11.66 8.19 87.66 0.72 12.37 16 3 O -0.60 -19.03 17.88 -3.02 -0.05 -19.09 16 4 N -0.65 -12.42 3.69 -858.85 -3.17 -15.59 16 5 C 0.12 1.78 7.58 83.10 0.63 2.41 16 6 C -0.14 -2.14 3.00 -11.30 -0.03 -2.18 16 7 C 0.53 12.54 7.27 87.66 0.64 13.17 16 8 O -0.58 -19.15 15.36 -3.05 -0.05 -19.19 16 9 N -0.60 -13.57 2.97 -817.98 -2.43 -15.99 16 10 C 0.11 1.85 6.33 86.51 0.55 2.40 16 11 C -0.13 -3.27 5.32 30.82 0.16 -3.10 16 12 C 0.17 5.63 2.59 45.02 0.12 5.74 16 13 N -0.58 -25.19 2.35 -677.89 -1.59 -26.78 16 14 C -0.21 -10.70 8.06 84.03 0.68 -10.02 16 15 H 0.05 2.61 6.87 -2.91 -0.02 2.59 16 16 C -0.04 -2.16 4.90 84.86 0.42 -1.74 16 17 N -0.92 -53.10 11.36 21.65 0.25 -52.85 16 18 Si 0.94 45.07 29.61 68.60 2.03 47.10 16 19 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 C 0.13 5.67 5.57 86.38 0.48 6.16 16 23 C 0.07 2.34 7.39 71.99 0.53 2.88 16 24 O -0.58 -21.06 13.40 -148.98 -2.00 -23.05 16 25 C -0.12 -4.28 5.31 30.68 0.16 -4.11 16 26 C 0.12 3.35 6.43 86.37 0.56 3.90 16 27 C 0.12 2.36 7.97 83.18 0.66 3.02 16 28 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.86 7.93 -2.39 -0.02 0.84 16 30 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.46 8.10 -2.39 -0.02 1.45 16 33 H 0.16 1.48 7.37 -2.39 -0.02 1.47 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.10 5.74 -2.39 -0.01 1.09 16 36 H 0.05 1.45 7.03 -2.39 -0.02 1.43 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.94 7.87 -2.39 -0.02 1.92 16 39 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 40 H 0.06 3.37 5.35 -2.39 -0.01 3.36 16 41 H 0.04 1.68 8.04 -2.39 -0.02 1.66 16 42 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.37 9.20 9.12 -74.05 -0.68 8.52 16 45 H 0.03 1.47 7.71 -2.39 -0.02 1.45 16 46 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 47 H 0.07 2.14 7.00 -2.39 -0.02 2.12 16 48 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.08 1.98 7.45 -2.39 -0.02 1.96 16 50 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -78.75 399.35 0.26 -78.50 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.27 Total: 17.22 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 6.99 Total: 29.73 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -6.94 Total: -111.21 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -2.10 Total: -61.33 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -78.75 0.26 -78.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098356125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.993 kcal (2) G-P(sol) polarization free energy of solvation -78.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds