Wall clock time and date at job start Sat Apr 11 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21278 * 120.00001 * 2 1 4 4 N 1.34782 * 119.99582 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99496 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.53597 * 325.09962 * 5 4 2 7 7 C 1.53034 * 109.50583 * 85.21136 * 5 4 2 8 8 N 1.46855 * 109.55911 * 179.13195 * 7 5 4 9 9 C 1.46896 * 110.99873 * 174.14498 * 8 7 5 10 10 C 1.50696 * 109.47452 * 294.18724 * 9 8 7 11 11 O 1.21292 * 119.99879 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00137 * 180.02562 * 10 9 8 13 13 C 1.37105 * 119.99968 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99700 * 359.71718 * 13 12 10 15 15 C 1.38942 * 119.99884 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00042 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00016 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46819 * 59.99994 * 17 15 13 19 19 H 1.48503 * 109.47158 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47620 * 300.00141 * 17 15 13 21 21 C 1.46867 * 111.17855 * 298.23240 * 8 7 5 22 22 C 1.52943 * 109.50913 * 61.63891 * 21 8 7 23 23 C 1.53075 * 109.56785 * 180.75393 * 22 21 8 24 24 C 1.53118 * 109.15887 * 296.87511 * 23 22 21 25 25 O 1.42902 * 109.41305 * 302.52583 * 24 23 22 26 26 C 1.42899 * 114.13443 * 61.17166 * 25 24 23 27 27 C 1.53096 * 109.53859 * 60.98742 * 22 21 8 28 28 C 1.53020 * 109.44389 * 300.91363 * 22 21 8 29 29 H 1.08989 * 109.47326 * 240.00227 * 1 2 3 30 30 H 1.09004 * 109.47116 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46881 * 120.00017 * 1 2 3 32 32 H 0.96995 * 119.99792 * 0.02562 * 4 2 1 33 33 H 1.08994 * 109.46222 * 59.10496 * 7 5 4 34 34 H 1.09003 * 109.45500 * 299.15289 * 7 5 4 35 35 H 1.09000 * 109.47017 * 174.18762 * 9 8 7 36 36 H 1.08996 * 109.47227 * 54.19082 * 9 8 7 37 37 H 0.96999 * 120.00047 * 359.97438 * 12 10 9 38 38 H 0.97005 * 120.00019 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.46354 * 181.65258 * 21 8 7 40 40 H 1.09002 * 109.46210 * 301.63377 * 21 8 7 41 41 H 1.08994 * 109.52200 * 56.78357 * 23 22 21 42 42 H 1.09002 * 109.52521 * 176.97248 * 23 22 21 43 43 H 1.09003 * 109.47995 * 182.54115 * 24 23 22 44 44 H 1.08995 * 109.48759 * 62.51220 * 24 23 22 45 45 H 1.08999 * 109.48956 * 178.82903 * 26 25 24 46 46 H 1.09003 * 109.49790 * 58.79355 * 26 25 24 47 47 H 1.08991 * 109.52893 * 183.02358 * 27 22 21 48 48 H 1.09004 * 109.51893 * 303.21710 * 27 22 21 49 49 H 1.09005 * 109.52399 * 177.45782 * 28 22 21 50 50 H 1.08992 * 109.52638 * 297.65174 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1673 0.0011 6 1 4.0106 -0.3249 -0.5867 7 6 4.1563 -1.0465 1.4387 8 7 5.6247 -1.0673 1.4425 9 6 6.1513 -0.8143 2.7903 10 6 5.8067 0.5918 3.2086 11 8 5.1832 1.3123 2.4579 12 7 6.1912 1.0489 4.4167 13 6 5.8772 2.3280 4.7975 14 1 5.3256 2.9709 4.1274 15 6 6.2731 2.7990 6.0432 16 7 6.9482 2.0184 6.8567 17 14 5.8459 4.5421 6.5617 18 1 4.3703 4.7091 6.5674 19 1 6.3777 4.7975 7.9245 20 1 6.4493 5.5049 5.6058 21 6 6.1388 -2.3339 0.9056 22 6 5.6862 -2.4944 -0.5465 23 6 6.2056 -3.8231 -1.1015 24 6 7.7366 -3.8002 -1.1097 25 8 8.1908 -2.6894 -1.8856 26 6 7.7755 -1.4174 -1.3839 27 6 6.2462 -1.3442 -1.3875 28 6 4.1574 -2.4757 -0.6085 29 1 -0.3633 -0.5137 0.8899 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6958 -2.0072 0.0005 33 1 3.7800 -1.8819 2.0291 34 1 3.8054 -0.1094 1.8711 35 1 7.2344 -0.9369 2.7861 36 1 5.7084 -1.5210 3.4920 37 1 6.6895 0.4727 5.0172 38 1 7.2243 2.3471 7.7266 39 1 7.2280 -2.3311 0.9484 40 1 5.7542 -3.1629 1.4997 41 1 5.8568 -4.6419 -0.4723 42 1 5.8380 -3.9618 -2.1183 43 1 8.1117 -4.7260 -1.5459 44 1 8.1042 -3.7046 -0.0881 45 1 8.1788 -0.6274 -2.0173 46 1 8.1432 -1.2902 -0.3657 47 1 5.8798 -1.4289 -2.4104 48 1 5.9260 -0.3928 -0.9624 49 1 3.8340 -2.5447 -1.6472 50 1 3.7596 -3.3199 -0.0454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099559739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:50 Heat of formation + Delta-G solvation = -115.612161 kcal Electronic energy + Delta-G solvation = -31669.842230 eV Core-core repulsion = 27503.752220 eV Total energy + Delta-G solvation = -4166.090011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87455 -39.33278 -38.40568 -37.22691 -34.72736 -34.27092 -33.61184 -31.40720 -31.15117 -30.97423 -28.92745 -27.67605 -27.35159 -24.68577 -23.90461 -23.53591 -22.55067 -21.04784 -20.36113 -19.11630 -18.41250 -17.80373 -16.81149 -16.56767 -16.06245 -16.00409 -15.73347 -15.40064 -15.28844 -14.67425 -14.59614 -14.52804 -14.35404 -14.04181 -13.90284 -13.57110 -13.27202 -13.05893 -12.85863 -12.67942 -12.48147 -12.32134 -12.26399 -12.05242 -11.58662 -11.49384 -11.43482 -11.39102 -11.25593 -11.00927 -10.86459 -10.75546 -10.39543 -10.26735 -10.16353 -10.09128 -9.74803 -9.41442 -9.36781 -8.99549 -8.37491 -7.92220 -7.81561 -6.36502 -3.76699 2.78190 3.17912 3.24489 3.29189 3.34691 3.85651 3.95539 3.98729 4.27444 4.47130 4.57737 4.60575 4.87484 4.92012 4.99595 5.04213 5.11542 5.16154 5.21035 5.26879 5.28189 5.29321 5.33448 5.40330 5.47740 5.56177 5.60028 5.63711 5.69560 5.72176 5.76634 5.79359 5.85199 5.92236 5.97544 6.04250 6.22078 6.24792 6.31966 6.40083 6.41992 6.65058 7.18390 7.26857 7.38618 7.58558 7.60884 8.12245 8.37537 8.68037 9.24356 9.60201 10.12992 10.81367 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009668 B = 0.003747 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.564258 B = 7470.413357 C = 9615.838395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.503 3.497 3 O -0.523 6.523 4 N -0.731 5.731 5 C 0.149 3.851 6 H 0.101 0.899 7 C 0.044 3.956 8 N -0.507 5.507 9 C 0.048 3.952 10 C 0.441 3.559 11 O -0.566 6.566 12 N -0.566 5.566 13 C -0.296 4.296 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.905 5.905 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.057 3.943 22 C -0.048 4.048 23 C -0.142 4.142 24 C 0.060 3.940 25 O -0.387 6.387 26 C 0.061 3.939 27 C -0.140 4.140 28 C -0.114 4.114 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.395 0.605 33 H 0.020 0.980 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.069 0.931 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 -16.322 -14.203 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.289 3.711 3 O -0.397 6.397 4 N -0.384 5.384 5 C 0.045 3.955 6 H 0.118 0.882 7 C -0.084 4.084 8 N -0.231 5.231 9 C -0.083 4.083 10 C 0.226 3.774 11 O -0.449 6.449 12 N -0.203 5.203 13 C -0.425 4.425 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.546 5.546 17 Si 0.756 3.244 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.071 4.071 22 C -0.049 4.049 23 C -0.180 4.180 24 C -0.017 4.017 25 O -0.306 6.306 26 C -0.016 4.016 27 C -0.178 4.178 28 C -0.152 4.152 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.229 0.771 33 H 0.038 0.962 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.115 0.885 49 H 0.088 0.912 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.301 -14.625 -14.980 21.596 hybrid contribution -0.590 -0.704 1.679 1.914 sum -5.891 -15.329 -13.301 21.133 Atomic orbital electron populations 1.21915 0.92107 1.05456 1.03779 1.20814 0.90449 0.83786 0.76086 1.90845 1.70478 1.31015 1.47381 1.46036 1.07150 1.08512 1.76664 1.20942 0.78764 0.98766 0.97062 0.88154 1.22618 0.87057 1.02982 0.95784 1.61365 1.08037 1.31439 1.22294 1.21833 1.00579 0.96894 0.89027 1.19748 0.85555 0.88613 0.83460 1.90564 1.43489 1.58168 1.52685 1.41850 1.50044 1.14107 1.14345 1.19656 1.33243 0.89326 1.00322 0.87982 1.25225 0.96883 0.99908 0.95900 1.69606 1.38518 1.36832 1.09670 0.85940 0.78897 0.82078 0.77452 1.19961 1.21036 1.19881 1.22288 1.00204 0.90611 0.93972 1.20433 0.94228 0.95268 0.94997 1.22202 0.96903 0.96985 1.01947 1.22556 0.93258 0.89931 0.95944 1.87900 1.75096 1.14482 1.53120 1.22630 0.94274 0.84932 0.99734 1.22196 0.96019 1.00135 0.99409 1.21896 0.95134 0.97057 1.01162 0.89621 0.89041 0.89802 0.77146 0.96232 0.87136 0.89358 0.93635 0.77627 0.91935 0.90470 0.95052 0.91035 0.90821 0.89253 0.93062 0.89015 0.92458 0.91827 0.88535 0.91247 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.32 36.01 0.37 -1.17 16 2 C 0.50 7.04 7.91 -10.98 -0.09 6.95 16 3 O -0.52 -10.56 16.75 5.56 0.09 -10.47 16 4 N -0.73 -8.43 5.08 -53.71 -0.27 -8.70 16 5 C 0.15 2.04 2.27 -67.84 -0.15 1.88 16 6 H 0.10 1.70 6.10 -51.93 -0.32 1.39 16 7 C 0.04 0.74 4.68 -3.83 -0.02 0.72 16 8 N -0.51 -8.23 3.64 -236.16 -0.86 -9.09 16 9 C 0.05 0.86 5.45 -4.98 -0.03 0.83 16 10 C 0.44 10.58 7.46 -10.99 -0.08 10.50 16 11 O -0.57 -15.71 13.90 5.55 0.08 -15.64 16 12 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 13 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 14 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 17 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.06 0.70 3.63 -3.87 -0.01 0.69 16 22 C -0.05 -0.51 0.51 -154.44 -0.08 -0.59 16 23 C -0.14 -1.22 4.92 -26.63 -0.13 -1.35 16 24 C 0.06 0.56 6.57 37.22 0.24 0.80 16 25 O -0.39 -4.63 10.76 -35.23 -0.38 -5.01 16 26 C 0.06 0.72 6.57 37.22 0.24 0.97 16 27 C -0.14 -1.69 4.43 -26.62 -0.12 -1.81 16 28 C -0.11 -1.15 4.27 -26.65 -0.11 -1.26 16 29 H 0.09 0.62 8.14 -51.94 -0.42 0.19 16 30 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.40 3.05 8.60 -40.82 -0.35 2.70 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.11 2.43 5.78 -51.93 -0.30 2.13 16 35 H 0.09 1.42 7.99 -51.93 -0.41 1.01 16 36 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 38 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.08 0.92 4.90 -51.93 -0.25 0.67 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.47 6.63 -51.93 -0.34 0.12 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.72 6.59 -51.93 -0.34 0.38 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.10 1.44 6.11 -51.93 -0.32 1.12 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -35.22 385.38 -8.06 -43.28 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -7.97 Total: 13.03 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -0.20 Total: 9.09 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.47 Total: -56.69 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.21 Total: -31.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.22 -8.06 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099559739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.332 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds