Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 119.99957 * 2 1 4 4 N 1.34771 * 119.99879 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99994 * 185.10261 * 4 2 1 6 6 C 1.50703 * 110.01652 * 302.28600 * 5 4 2 7 7 O 1.21275 * 120.00280 * 143.80348 * 6 5 4 8 8 N 1.34780 * 119.99857 * 323.80198 * 6 5 4 9 9 C 1.46500 * 120.00052 * 184.99222 * 8 6 5 10 10 H 1.08997 * 109.46163 * 34.97528 * 9 8 6 11 11 C 1.53043 * 109.46045 * 274.99979 * 9 8 6 12 12 C 1.53193 * 109.31121 * 178.61506 * 11 9 8 13 13 N 1.46920 * 108.77572 * 54.63649 * 12 11 9 14 14 C 1.36934 * 120.63194 * 126.36764 * 13 12 11 15 15 H 1.08004 * 119.99809 * 328.12478 * 14 13 12 16 16 C 1.38813 * 120.00367 * 148.12231 * 14 13 12 17 17 N 1.31620 * 119.99674 * 349.52678 * 16 14 13 18 18 Si 1.86799 * 120.00285 * 169.51817 * 16 14 13 19 19 H 1.48495 * 109.47290 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47358 * 300.00710 * 18 16 14 21 21 H 1.48507 * 109.46702 * 60.00238 * 18 16 14 22 22 C 1.46926 * 118.73843 * 306.64441 * 13 12 11 23 23 C 1.52755 * 109.01351 * 53.30652 * 22 13 12 24 24 H 1.08992 * 109.57090 * 185.55190 * 23 22 13 25 25 O 1.42907 * 109.35727 * 65.50088 * 23 22 13 26 26 C 1.54262 * 110.03448 * 63.67418 * 5 4 2 27 27 C 1.54970 * 104.16098 * 95.75429 * 26 5 4 28 28 C 1.54888 * 102.77221 * 37.88934 * 27 26 5 29 29 C 1.53873 * 110.03540 * 180.89242 * 5 4 2 30 30 H 1.09006 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47314 * 299.99346 * 1 2 3 32 32 H 1.09001 * 109.47285 * 60.00264 * 1 2 3 33 33 H 0.96998 * 120.00437 * 5.10502 * 4 2 1 34 34 H 0.97001 * 119.99922 * 4.99168 * 8 6 5 35 35 H 1.08996 * 109.49278 * 58.66112 * 11 9 8 36 36 H 1.09000 * 109.49485 * 298.57013 * 11 9 8 37 37 H 1.09005 * 109.58368 * 294.84863 * 12 11 9 38 38 H 1.08996 * 109.58022 * 174.42566 * 12 11 9 39 39 H 0.97000 * 119.99871 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.58660 * 173.14483 * 22 13 12 41 41 H 1.09001 * 109.58878 * 293.56532 * 22 13 12 42 42 H 0.96703 * 114.00179 * 60.15968 * 25 23 22 43 43 H 1.08996 * 110.49106 * 214.40711 * 26 5 4 44 44 H 1.09005 * 110.48289 * 337.04475 * 26 5 4 45 45 H 1.08997 * 110.71781 * 279.57711 * 27 26 5 46 46 H 1.08994 * 110.91815 * 156.29858 * 27 26 5 47 47 H 1.08997 * 110.48555 * 203.39971 * 28 27 26 48 48 H 1.09008 * 110.48186 * 80.76437 * 28 27 26 49 49 H 1.09006 * 110.03324 * 359.95292 * 29 5 4 50 50 H 1.09004 * 110.03546 * 121.38010 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6415 -1.1698 0.1123 6 6 4.2467 -0.3613 -1.0063 7 8 5.2392 0.3057 -0.8042 8 7 3.6850 -0.3796 -2.2313 9 6 4.3333 0.3173 -3.3450 10 1 5.4156 0.2453 -3.2376 11 6 3.9169 1.7899 -3.3366 12 6 4.6236 2.5227 -4.4813 13 7 4.3367 1.8216 -5.7402 14 6 3.8192 2.4974 -6.8129 15 1 3.1603 3.3384 -6.6545 16 6 4.1414 2.1015 -8.1038 17 7 5.0967 1.2182 -8.3020 18 14 3.2189 2.8223 -9.5594 19 1 3.7485 2.2399 -10.8186 20 1 1.7737 2.5038 -9.4366 21 1 3.4009 4.2960 -9.5801 22 6 4.6098 0.3804 -5.8242 23 6 3.9085 -0.3274 -4.6664 24 1 4.1845 -1.3817 -4.6621 25 8 2.4934 -0.2048 -4.8236 26 6 4.0672 -0.5870 1.4757 27 6 4.2678 -1.8332 2.3747 28 6 4.9014 -2.8587 1.4021 29 6 4.1713 -2.6137 0.0656 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6988 -2.0055 -0.0756 34 1 2.8514 -0.8542 -2.3756 35 1 4.1989 2.2423 -2.3859 36 1 2.8374 1.8634 -3.4690 37 1 5.6989 2.5281 -4.3029 38 1 4.2559 3.5470 -4.5414 39 1 5.3217 0.9413 -9.2040 40 1 4.2330 -0.0083 -6.7703 41 1 5.6839 0.2075 -5.7577 42 1 2.1535 -0.5926 -5.6416 43 1 5.0006 -0.0324 1.3789 44 1 3.2823 0.0530 1.8789 45 1 3.3109 -2.1963 2.7495 46 1 4.9456 -1.6130 3.1994 47 1 4.7252 -3.8757 1.7523 48 1 5.9697 -2.6714 1.2932 49 1 3.3415 -3.3126 -0.0402 50 1 4.8661 -2.7298 -0.7662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100032085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -133.189681 kcal Electronic energy + Delta-G solvation = -32135.354704 eV Core-core repulsion = 27968.502475 eV Total energy + Delta-G solvation = -4166.852229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09820 -40.40020 -39.48842 -38.15008 -36.52801 -35.80761 -34.76227 -33.83969 -31.56268 -30.93863 -30.61936 -29.80533 -28.47768 -26.95184 -24.38607 -23.76926 -22.66423 -22.48629 -21.32322 -21.10751 -20.33010 -19.22278 -18.68270 -17.87823 -17.58172 -17.15943 -16.92926 -16.76758 -16.29978 -16.06881 -15.72003 -15.58188 -15.37044 -15.34780 -15.02785 -14.66583 -14.47576 -14.13473 -13.85490 -13.70339 -13.58202 -13.25547 -13.09699 -12.96332 -12.85355 -12.67760 -12.65014 -12.41147 -12.34173 -12.29175 -12.13017 -12.06926 -11.94348 -11.85329 -11.59146 -11.46254 -11.18521 -10.89023 -10.79715 -10.61169 -10.07435 -10.01919 -8.64180 -7.89291 -5.40157 1.47873 1.48879 1.52279 1.56500 1.63795 2.08225 2.27403 2.49526 3.23559 3.35408 3.44034 3.45948 3.59999 3.75785 3.84580 3.94775 3.97795 4.21000 4.28658 4.34963 4.37471 4.41346 4.48967 4.53302 4.53445 4.67252 4.69001 4.70279 4.76723 4.82336 4.92165 4.94674 5.00908 5.04892 5.13514 5.14425 5.18593 5.20295 5.36899 5.42870 5.43903 5.52317 5.53462 5.61702 6.37287 6.50445 6.61434 6.89953 7.13593 7.23261 7.29294 7.77953 8.34426 9.16824 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.003128 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.188081 B = 8948.369133 C = 9421.660015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.498 3.502 3 O -0.584 6.584 4 N -0.705 5.705 5 C 0.161 3.839 6 C 0.514 3.486 7 O -0.584 6.584 8 N -0.700 5.700 9 C 0.170 3.830 10 H 0.068 0.932 11 C -0.111 4.111 12 C 0.147 3.853 13 N -0.596 5.596 14 C -0.262 4.262 15 H 0.057 0.943 16 C -0.041 4.041 17 N -0.934 5.934 18 Si 0.972 3.028 19 H -0.291 1.291 20 H -0.274 1.274 21 H -0.282 1.282 22 C 0.153 3.847 23 C 0.094 3.906 24 H 0.074 0.926 25 O -0.562 6.562 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.118 4.118 29 C -0.114 4.114 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.425 0.575 34 H 0.409 0.591 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.009 0.991 38 H 0.051 0.949 39 H 0.253 0.747 40 H 0.076 0.924 41 H 0.003 0.997 42 H 0.387 0.613 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.058 0.942 49 H 0.121 0.879 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 -16.255 19.818 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.287 3.713 3 O -0.463 6.463 4 N -0.363 5.363 5 C 0.070 3.930 6 C 0.301 3.699 7 O -0.463 6.463 8 N -0.350 5.350 9 C 0.065 3.935 10 H 0.086 0.914 11 C -0.151 4.151 12 C 0.021 3.979 13 N -0.319 5.319 14 C -0.392 4.392 15 H 0.074 0.926 16 C -0.237 4.237 17 N -0.580 5.580 18 Si 0.800 3.200 19 H -0.217 1.217 20 H -0.200 1.200 21 H -0.208 1.208 22 C 0.026 3.974 23 C 0.032 3.968 24 H 0.091 0.909 25 O -0.369 6.369 26 C -0.159 4.159 27 C -0.149 4.149 28 C -0.156 4.156 29 C -0.152 4.152 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.265 0.735 34 H 0.245 0.755 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.021 0.979 42 H 0.236 0.764 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.139 0.861 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.826 -14.811 20.366 26.684 hybrid contribution -0.372 0.362 -1.789 1.863 sum -9.198 -14.449 18.577 25.268 Atomic orbital electron populations 1.21869 0.87913 1.06810 1.05498 1.21750 0.92430 0.83055 0.74034 1.90818 1.71797 1.33423 1.50223 1.46248 1.04960 1.09966 1.75160 1.21160 0.81553 0.97500 0.92742 1.21328 0.83577 0.80813 0.84197 1.90646 1.29207 1.43502 1.82971 1.45830 1.27095 1.53831 1.08253 1.20658 0.96197 0.91798 0.84837 0.91366 1.21946 1.00383 0.95615 0.97138 1.20931 0.95544 0.95290 0.86152 1.43996 1.74374 1.03991 1.09566 1.19359 1.21232 1.13176 0.85431 0.92556 1.25854 0.97730 1.00069 1.00028 1.70107 1.31165 1.35939 1.20789 0.85288 0.78446 0.77907 0.78391 1.21653 1.19958 1.20844 1.21229 0.95481 0.83940 0.96702 1.22431 0.82618 0.97702 0.94005 0.90865 1.86339 1.20433 1.84294 1.45787 1.22604 1.01248 0.99021 0.92993 1.22502 1.02085 0.93154 0.97175 1.22370 0.99314 1.00790 0.93106 1.22443 1.02063 0.90717 0.99958 0.86587 0.88011 0.89173 0.73475 0.75520 0.94191 0.92633 0.97280 0.93047 0.93831 0.90560 0.97888 0.76426 0.92412 0.92270 0.89158 0.90647 0.87806 0.92326 0.86100 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 10.39 71.24 0.74 -1.20 16 2 C 0.50 10.80 6.82 87.66 0.60 11.40 16 3 O -0.58 -20.36 15.02 -3.02 -0.05 -20.40 16 4 N -0.71 -10.88 4.42 -423.04 -1.87 -12.76 16 5 C 0.16 3.49 0.87 3.58 0.00 3.49 16 6 C 0.51 17.06 4.86 87.66 0.43 17.48 16 7 O -0.58 -25.07 15.21 -3.01 -0.05 -25.11 16 8 N -0.70 -22.42 4.82 -442.40 -2.13 -24.55 16 9 C 0.17 6.64 2.16 45.02 0.10 6.73 16 10 H 0.07 2.94 7.65 -2.39 -0.02 2.92 16 11 C -0.11 -4.88 5.51 30.67 0.17 -4.71 16 12 C 0.15 7.17 6.52 86.36 0.56 7.74 16 13 N -0.60 -31.29 2.93 -699.95 -2.05 -33.34 16 14 C -0.26 -14.76 9.57 84.03 0.80 -13.95 16 15 H 0.06 3.18 7.85 -2.91 -0.02 3.16 16 16 C -0.04 -2.28 5.05 84.86 0.43 -1.85 16 17 N -0.93 -54.04 11.10 21.65 0.24 -53.80 16 18 Si 0.97 44.62 29.57 68.60 2.03 46.64 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 C 0.15 7.27 4.85 86.22 0.42 7.69 16 23 C 0.09 3.46 3.37 30.53 0.10 3.56 16 24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 25 O -0.56 -19.53 12.08 -148.98 -1.80 -21.33 16 26 C -0.12 -2.85 5.59 31.70 0.18 -2.67 16 27 C -0.11 -1.56 6.91 31.91 0.22 -1.34 16 28 C -0.12 -1.43 6.83 31.67 0.22 -1.22 16 29 C -0.11 -1.58 6.24 31.31 0.20 -1.38 16 30 H 0.12 0.41 7.92 -2.38 -0.02 0.39 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 2.50 7.91 -92.71 -0.73 1.77 16 34 H 0.41 11.08 7.54 -92.71 -0.70 10.38 16 35 H 0.04 1.87 8.09 -2.39 -0.02 1.85 16 36 H 0.05 2.56 7.61 -2.39 -0.02 2.54 16 37 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.05 2.49 7.93 -2.39 -0.02 2.47 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.08 3.90 6.16 -2.39 -0.01 3.89 16 41 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.39 11.31 9.08 -74.05 -0.67 10.64 16 43 H 0.06 1.81 6.79 -2.39 -0.02 1.79 16 44 H 0.06 1.56 6.81 -2.38 -0.02 1.54 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.12 0.71 7.44 -2.38 -0.02 0.69 16 50 H 0.07 1.16 7.67 -2.38 -0.02 1.14 16 Total: -1.00 -82.20 390.06 -1.65 -83.85 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -1.13 Total: 31.02 kcal Atomic # 6 Polarization: 24.62 SS G_CDS: 5.16 Total: 29.78 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -5.81 Total: -124.44 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -1.89 Total: -66.85 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -82.20 -1.65 -83.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100032085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.343 kcal (2) G-P(sol) polarization free energy of solvation -82.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds