Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 119.99912 * 2 1 4 4 N 1.34774 * 119.99945 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99841 * 179.97438 * 4 2 1 6 6 C 1.50701 * 109.47158 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99783 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98974 * 0.02562 * 8 6 5 10 10 C 1.53292 * 108.38071 * 230.60338 * 9 8 6 11 11 O 1.42969 * 109.23581 * 307.66979 * 10 9 8 12 12 C 1.42892 * 114.19470 * 62.49154 * 11 10 9 13 13 C 1.52960 * 109.57672 * 177.70809 * 12 11 10 14 14 C 1.52997 * 109.51340 * 299.56226 * 13 12 11 15 15 C 1.53000 * 109.47060 * 300.07539 * 14 13 12 16 16 N 1.46507 * 109.47099 * 180.02562 * 15 14 13 17 17 C 1.36943 * 119.99574 * 155.00276 * 16 15 14 18 18 H 1.07995 * 119.99945 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99331 * 179.97438 * 17 16 15 20 20 N 1.31609 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99530 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47204 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46916 * 119.99907 * 21 19 17 24 24 H 1.48499 * 109.47444 * 239.99888 * 21 19 17 25 25 C 1.53004 * 109.45117 * 60.05665 * 15 14 13 26 26 C 1.52946 * 109.58143 * 57.46052 * 12 11 10 27 27 C 1.47158 * 120.98550 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47291 * 300.00284 * 1 2 3 30 30 H 1.09002 * 109.47044 * 60.00507 * 1 2 3 31 31 H 0.96999 * 119.99718 * 0.02562 * 4 2 1 32 32 H 1.09000 * 109.46664 * 60.00747 * 5 4 2 33 33 H 1.08994 * 109.47341 * 300.00775 * 5 4 2 34 34 H 1.09001 * 109.67603 * 110.88138 * 9 8 6 35 35 H 1.08993 * 109.71282 * 350.34569 * 9 8 6 36 36 H 1.08995 * 109.50854 * 187.74250 * 10 9 8 37 37 H 1.09003 * 109.55201 * 67.62415 * 10 9 8 38 38 H 1.09000 * 109.46397 * 179.54940 * 13 12 11 39 39 H 1.09000 * 109.46093 * 59.57623 * 13 12 11 40 40 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.46832 * 60.07410 * 14 13 12 42 42 H 1.08995 * 109.47704 * 300.06073 * 15 14 13 43 43 H 0.96996 * 120.00207 * 334.99250 * 16 15 14 44 44 H 0.97005 * 120.00190 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.46878 * 59.93585 * 25 15 14 46 46 H 1.08989 * 109.47330 * 179.97438 * 25 15 14 47 47 H 1.09010 * 109.46276 * 300.41250 * 26 12 11 48 48 H 1.09003 * 109.46732 * 180.44203 * 26 12 11 49 49 H 1.09001 * 109.68114 * 9.76268 * 27 8 6 50 50 H 1.09000 * 109.67889 * 249.20775 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 0.0001 7 8 3.3601 -3.5098 0.0001 8 7 5.4733 -2.8342 0.0001 9 6 6.4487 -1.7324 0.0007 10 6 7.4606 -1.9820 -1.1235 11 8 7.9944 -3.3018 -0.9922 12 6 7.0235 -4.3419 -1.1231 13 6 7.7139 -5.7031 -1.0226 14 6 8.7441 -5.8378 -2.1457 15 6 8.0411 -5.7201 -3.4995 16 7 9.0276 -5.8496 -4.5749 17 6 8.6372 -6.2848 -5.8133 18 1 7.6023 -6.5329 -5.9970 19 6 9.5718 -6.4070 -6.8324 20 7 10.8328 -6.1042 -6.6086 21 14 9.0394 -7.0014 -8.5214 22 1 7.5795 -7.2731 -8.5131 23 1 9.3422 -5.9562 -9.5320 24 1 9.7733 -8.2466 -8.8620 25 6 7.3538 -4.3568 -3.5999 26 6 6.3229 -4.2217 -2.4774 27 6 5.9877 -4.2130 -0.0003 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6958 -2.0072 0.0005 32 1 4.0095 -0.6528 0.8895 33 1 4.0089 -0.6538 -0.8904 34 1 6.9658 -1.7004 0.9597 35 1 5.9350 -0.7865 -0.1711 36 1 8.2687 -1.2539 -1.0541 37 1 6.9645 -1.8844 -2.0892 38 1 6.9706 -6.4951 -1.1148 39 1 8.2150 -5.7859 -0.0582 40 1 9.2354 -6.8082 -2.0737 41 1 9.4883 -5.0468 -2.0528 42 1 7.2961 -6.5103 -3.5921 43 1 9.9571 -5.6270 -4.4099 44 1 11.4860 -6.1899 -7.3206 45 1 8.0987 -3.5666 -3.5061 46 1 6.8532 -4.2724 -4.5643 47 1 5.8339 -3.2501 -2.5484 48 1 5.5773 -5.0112 -2.5721 49 1 5.1683 -4.9104 -0.1747 50 1 6.4572 -4.4299 0.9592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105453783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -104.634825 kcal Electronic energy + Delta-G solvation = -30815.899808 eV Core-core repulsion = 26650.285810 eV Total energy + Delta-G solvation = -4165.613998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17755 -40.04665 -39.04335 -36.82708 -35.02158 -34.87350 -33.80971 -31.82956 -30.91812 -30.51324 -29.72852 -28.71105 -27.27269 -25.14825 -23.86832 -23.11597 -22.24877 -21.05670 -20.61920 -19.48310 -19.28785 -17.99844 -17.25555 -17.05082 -16.63140 -16.49343 -16.01827 -15.75091 -15.50047 -15.13551 -15.07822 -14.78331 -14.12336 -14.08089 -13.81933 -13.56828 -13.45946 -13.36688 -13.12959 -12.99808 -12.67855 -12.49219 -12.40617 -12.19178 -12.00022 -11.90201 -11.65845 -11.08785 -10.97945 -10.87266 -10.70986 -10.53290 -10.47177 -10.38603 -10.13669 -10.10095 -9.95033 -9.63112 -9.58495 -9.51864 -8.85281 -8.76036 -6.91629 -5.74030 -3.02057 2.08958 2.23179 2.26425 2.92104 3.43912 3.49662 3.51759 3.62820 3.89714 4.40961 4.44857 4.59996 4.61005 4.72529 4.76119 4.77429 4.80764 4.90051 4.95296 4.95897 5.00842 5.25372 5.37775 5.39937 5.43310 5.48197 5.55078 5.58562 5.64491 5.77833 5.82164 5.83923 5.86416 5.92989 6.09809 6.14514 6.26807 6.40127 6.53285 6.66757 6.74355 6.87472 7.02238 7.06062 7.15595 7.21763 7.61264 7.72824 7.77639 8.45033 9.56001 10.15646 10.50308 11.48810 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.002460 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.248877 B =11378.776544 C =12240.982853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.719 5.719 5 C 0.099 3.901 6 C 0.513 3.487 7 O -0.537 6.537 8 N -0.605 5.605 9 C 0.068 3.932 10 C 0.042 3.958 11 O -0.356 6.356 12 C 0.110 3.890 13 C -0.097 4.097 14 C -0.119 4.119 15 C 0.179 3.821 16 N -0.725 5.725 17 C -0.235 4.235 18 H 0.069 0.931 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.128 4.128 26 C -0.136 4.136 27 C 0.090 3.910 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.413 0.587 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.102 0.898 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.578 10.430 18.907 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.427 6.427 4 N -0.375 5.375 5 C -0.029 4.029 6 C 0.300 3.700 7 O -0.414 6.414 8 N -0.339 5.339 9 C -0.055 4.055 10 C -0.035 4.035 11 O -0.275 6.275 12 C 0.070 3.930 13 C -0.135 4.135 14 C -0.157 4.157 15 C 0.070 3.930 16 N -0.365 5.365 17 C -0.366 4.366 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.169 4.169 26 C -0.174 4.174 27 C -0.033 4.033 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.251 0.749 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.120 0.880 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.455 10.558 18.778 26.514 hybrid contribution -0.341 -0.403 -1.002 1.133 sum -15.796 10.156 17.776 25.858 Atomic orbital electron populations 1.21833 0.91003 1.04563 1.05497 1.20865 0.90844 0.82960 0.75262 1.90738 1.70758 1.31383 1.49843 1.45906 1.05875 1.10099 1.75659 1.21096 0.82613 0.94349 1.04793 1.20455 0.82235 0.91099 0.76194 1.90698 1.54482 1.45934 1.50299 1.48029 1.05036 1.08008 1.72814 1.22608 0.91620 0.89875 1.01391 1.22952 0.97351 0.86119 0.97114 1.88048 1.33612 1.13108 1.92685 1.21860 0.88255 0.89349 0.93508 1.21451 0.99071 0.92978 1.00005 1.21711 0.97821 1.02077 0.94117 1.20195 0.91681 0.93733 0.87437 1.42436 1.06986 1.79426 1.07645 1.19287 0.93783 1.35818 0.87717 0.91273 1.24731 0.95533 1.02645 0.98234 1.69670 1.00984 1.55117 1.32392 0.86155 0.77537 0.78014 0.84738 1.20624 1.21955 1.21912 1.22172 0.97259 1.01216 0.96234 1.22069 0.98979 1.01482 0.94912 1.22463 0.98432 0.82676 0.99698 0.90313 0.88528 0.88448 0.74886 0.88305 0.88237 0.89906 0.88820 0.87513 0.91859 0.90513 0.91422 0.91806 0.91327 0.93921 0.78287 0.93637 0.92196 0.92294 0.92759 0.91355 0.87989 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.39 36.01 0.37 -0.45 16 2 C 0.51 4.54 7.94 -10.99 -0.09 4.45 16 3 O -0.55 -7.03 17.10 5.56 0.10 -6.93 16 4 N -0.72 -5.93 5.53 -61.47 -0.34 -6.26 16 5 C 0.10 0.82 4.53 -5.19 -0.02 0.79 16 6 C 0.51 5.19 7.78 -10.99 -0.09 5.10 16 7 O -0.54 -6.90 15.14 5.56 0.08 -6.82 16 8 N -0.61 -5.76 2.54 -172.27 -0.44 -6.19 16 9 C 0.07 0.50 6.54 -3.53 -0.02 0.48 16 10 C 0.04 0.40 6.60 37.31 0.25 0.65 16 11 O -0.36 -4.49 8.93 -35.23 -0.31 -4.81 16 12 C 0.11 1.35 0.68 -90.51 -0.06 1.29 16 13 C -0.10 -1.23 4.94 -26.75 -0.13 -1.36 16 14 C -0.12 -1.95 5.25 -26.73 -0.14 -2.09 16 15 C 0.18 3.53 2.77 -67.92 -0.19 3.34 16 16 N -0.72 -18.19 5.12 -53.42 -0.27 -18.46 16 17 C -0.23 -6.53 9.93 -15.06 -0.15 -6.68 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 21 Si 0.90 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C -0.13 -2.28 5.36 -26.73 -0.14 -2.42 16 26 C -0.14 -1.90 4.19 -26.76 -0.11 -2.01 16 27 C 0.09 0.95 5.30 -3.53 -0.02 0.93 16 28 H 0.08 0.24 7.91 -51.93 -0.41 -0.17 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.41 3.12 7.27 -40.82 -0.30 2.83 16 32 H 0.10 0.72 8.01 -51.93 -0.42 0.30 16 33 H 0.10 0.79 7.66 -51.93 -0.40 0.39 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.50 6.06 -51.93 -0.31 0.18 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.66 6.26 -51.93 -0.33 0.34 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 42 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 46 H 0.06 1.16 8.14 -51.94 -0.42 0.74 16 47 H 0.05 0.73 6.11 -51.92 -0.32 0.41 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.10 1.17 7.07 -51.93 -0.37 0.80 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -34.89 391.18 -8.39 -43.28 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.16 Total: 8.93 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.64 Total: 1.47 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.33 Total: -58.53 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.14 Total: -18.56 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.89 -8.39 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105453783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.355 kcal (2) G-P(sol) polarization free energy of solvation -34.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds