Wall clock time and date at job start Sat Apr 11 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 119.99912 * 2 1 4 4 N 1.34774 * 119.99945 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99841 * 179.97438 * 4 2 1 6 6 C 1.50701 * 109.47158 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99783 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.98974 * 0.02562 * 8 6 5 10 10 C 1.53292 * 108.38071 * 230.60338 * 9 8 6 11 11 O 1.42969 * 109.23581 * 307.66979 * 10 9 8 12 12 C 1.42892 * 114.19470 * 62.49154 * 11 10 9 13 13 C 1.52960 * 109.57672 * 177.70809 * 12 11 10 14 14 C 1.52997 * 109.51340 * 299.56226 * 13 12 11 15 15 C 1.53000 * 109.47060 * 300.07539 * 14 13 12 16 16 N 1.46507 * 109.47099 * 180.02562 * 15 14 13 17 17 C 1.36943 * 119.99574 * 155.00276 * 16 15 14 18 18 H 1.07995 * 119.99945 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99331 * 179.97438 * 17 16 15 20 20 N 1.31609 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99530 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47204 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46916 * 119.99907 * 21 19 17 24 24 H 1.48499 * 109.47444 * 239.99888 * 21 19 17 25 25 C 1.53004 * 109.45117 * 60.05665 * 15 14 13 26 26 C 1.52946 * 109.58143 * 57.46052 * 12 11 10 27 27 C 1.47158 * 120.98550 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47291 * 300.00284 * 1 2 3 30 30 H 1.09002 * 109.47044 * 60.00507 * 1 2 3 31 31 H 0.96999 * 119.99718 * 0.02562 * 4 2 1 32 32 H 1.09000 * 109.46664 * 60.00747 * 5 4 2 33 33 H 1.08994 * 109.47341 * 300.00775 * 5 4 2 34 34 H 1.09001 * 109.67603 * 110.88138 * 9 8 6 35 35 H 1.08993 * 109.71282 * 350.34569 * 9 8 6 36 36 H 1.08995 * 109.50854 * 187.74250 * 10 9 8 37 37 H 1.09003 * 109.55201 * 67.62415 * 10 9 8 38 38 H 1.09000 * 109.46397 * 179.54940 * 13 12 11 39 39 H 1.09000 * 109.46093 * 59.57623 * 13 12 11 40 40 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.46832 * 60.07410 * 14 13 12 42 42 H 1.08995 * 109.47704 * 300.06073 * 15 14 13 43 43 H 0.96996 * 120.00207 * 334.99250 * 16 15 14 44 44 H 0.97005 * 120.00190 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.46878 * 59.93585 * 25 15 14 46 46 H 1.08989 * 109.47330 * 179.97438 * 25 15 14 47 47 H 1.09010 * 109.46276 * 300.41250 * 26 12 11 48 48 H 1.09003 * 109.46732 * 180.44203 * 26 12 11 49 49 H 1.09001 * 109.68114 * 9.76268 * 27 8 6 50 50 H 1.09000 * 109.67889 * 249.20775 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 0.0001 7 8 3.3601 -3.5098 0.0001 8 7 5.4733 -2.8342 0.0001 9 6 6.4487 -1.7324 0.0007 10 6 7.4606 -1.9820 -1.1235 11 8 7.9944 -3.3018 -0.9922 12 6 7.0235 -4.3419 -1.1231 13 6 7.7139 -5.7031 -1.0226 14 6 8.7441 -5.8378 -2.1457 15 6 8.0411 -5.7201 -3.4995 16 7 9.0276 -5.8496 -4.5749 17 6 8.6372 -6.2848 -5.8133 18 1 7.6023 -6.5329 -5.9970 19 6 9.5718 -6.4070 -6.8324 20 7 10.8328 -6.1042 -6.6086 21 14 9.0394 -7.0014 -8.5214 22 1 7.5795 -7.2731 -8.5131 23 1 9.3422 -5.9562 -9.5320 24 1 9.7733 -8.2466 -8.8620 25 6 7.3538 -4.3568 -3.5999 26 6 6.3229 -4.2217 -2.4774 27 6 5.9877 -4.2130 -0.0003 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6958 -2.0072 0.0005 32 1 4.0095 -0.6528 0.8895 33 1 4.0089 -0.6538 -0.8904 34 1 6.9658 -1.7004 0.9597 35 1 5.9350 -0.7865 -0.1711 36 1 8.2687 -1.2539 -1.0541 37 1 6.9645 -1.8844 -2.0892 38 1 6.9706 -6.4951 -1.1148 39 1 8.2150 -5.7859 -0.0582 40 1 9.2354 -6.8082 -2.0737 41 1 9.4883 -5.0468 -2.0528 42 1 7.2961 -6.5103 -3.5921 43 1 9.9571 -5.6270 -4.4099 44 1 11.4860 -6.1899 -7.3206 45 1 8.0987 -3.5666 -3.5061 46 1 6.8532 -4.2724 -4.5643 47 1 5.8339 -3.2501 -2.5484 48 1 5.5773 -5.0112 -2.5721 49 1 5.1683 -4.9104 -0.1747 50 1 6.4572 -4.4299 0.9592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105453783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:20 Heat of formation + Delta-G solvation = -130.330177 kcal Electronic energy + Delta-G solvation = -30817.014042 eV Core-core repulsion = 26650.285810 eV Total energy + Delta-G solvation = -4166.728232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.03909 -40.85456 -39.92440 -38.11189 -35.99228 -35.63952 -35.34117 -33.36698 -31.83700 -31.62028 -31.01320 -29.53433 -28.31099 -26.40082 -25.02938 -24.53282 -23.47850 -21.90076 -21.68268 -20.69586 -20.16322 -19.14962 -18.68379 -17.93086 -17.44869 -17.23539 -17.11465 -16.79719 -16.45692 -16.21029 -16.02412 -15.90664 -15.50667 -15.28657 -14.85232 -14.81167 -14.65609 -14.26002 -14.07432 -13.81696 -13.79279 -13.33804 -13.25381 -13.15698 -13.12867 -12.95617 -12.91690 -12.82463 -12.60043 -12.22285 -12.08478 -12.00874 -11.84048 -11.67613 -11.43896 -11.29568 -11.11578 -10.99488 -10.91582 -10.69054 -10.31434 -9.59434 -8.99386 -7.94356 -5.22210 1.32800 1.45262 1.45788 1.55549 1.55766 1.57249 2.30240 2.54984 2.76256 3.20045 3.38067 3.53774 3.71581 3.79343 3.88692 3.89354 3.98413 4.13942 4.18552 4.23190 4.27098 4.29612 4.36827 4.49035 4.51155 4.54285 4.58961 4.60194 4.66480 4.68508 4.75794 4.85871 4.90686 4.98907 5.03789 5.04585 5.10487 5.18771 5.24336 5.28982 5.31438 5.48843 5.57548 5.65096 6.13823 6.27722 6.29570 6.43863 6.84902 7.13244 7.33853 8.11971 8.34930 9.29476 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.002460 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.248877 B =11378.776544 C =12240.982853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.509 3.491 3 O -0.594 6.594 4 N -0.717 5.717 5 C 0.100 3.900 6 C 0.514 3.486 7 O -0.567 6.567 8 N -0.605 5.605 9 C 0.072 3.928 10 C 0.035 3.965 11 O -0.374 6.374 12 C 0.116 3.884 13 C -0.092 4.092 14 C -0.108 4.108 15 C 0.173 3.827 16 N -0.738 5.738 17 C -0.234 4.234 18 H 0.072 0.928 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.294 1.294 24 H -0.292 1.292 25 C -0.114 4.114 26 C -0.126 4.126 27 C 0.096 3.904 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.047 0.953 46 H 0.032 0.968 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.094 0.906 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.315 10.913 20.519 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.475 6.475 4 N -0.372 5.372 5 C -0.027 4.027 6 C 0.303 3.697 7 O -0.446 6.446 8 N -0.338 5.338 9 C -0.050 4.050 10 C -0.042 4.042 11 O -0.293 6.293 12 C 0.076 3.924 13 C -0.130 4.130 14 C -0.147 4.147 15 C 0.065 3.935 16 N -0.377 5.377 17 C -0.366 4.366 18 H 0.090 0.910 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.799 3.201 22 H -0.192 1.192 23 H -0.222 1.222 24 H -0.220 1.220 25 C -0.155 4.155 26 C -0.164 4.164 27 C -0.027 4.027 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.256 0.744 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.112 0.888 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.235 11.035 20.423 28.912 hybrid contribution 0.201 -0.530 -1.475 1.581 sum -17.034 10.504 18.947 27.559 Atomic orbital electron populations 1.21880 0.87966 1.06222 1.06284 1.21550 0.92315 0.82221 0.74026 1.90715 1.71914 1.32791 1.52075 1.45973 1.05987 1.10252 1.75019 1.21141 0.82827 0.93135 1.05625 1.20712 0.82121 0.91432 0.75464 1.90686 1.55257 1.46923 1.51754 1.48101 1.05278 1.08168 1.72273 1.22729 0.90886 0.90045 1.01312 1.23158 0.98550 0.85126 0.97366 1.88027 1.34290 1.14275 1.92726 1.21740 0.88512 0.89290 0.92897 1.21445 0.98448 0.93831 0.99291 1.21554 0.98336 1.01232 0.93539 1.20457 0.90929 0.94367 0.87766 1.42661 1.07385 1.79427 1.08254 1.19623 0.93781 1.34396 0.88845 0.91048 1.25531 0.95693 1.03876 1.01946 1.69823 1.01997 1.57015 1.33257 0.85123 0.77727 0.77084 0.80167 1.19207 1.22158 1.21965 1.21903 0.97546 0.99404 0.96615 1.21959 0.97844 1.01914 0.94695 1.22309 0.97549 0.83307 0.99500 0.88254 0.87467 0.87788 0.74409 0.86939 0.87815 0.88097 0.86524 0.85732 0.93269 0.89298 0.89112 0.92484 0.92499 0.94501 0.79708 0.94108 0.93423 0.94930 0.91999 0.91343 0.88753 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.39 71.24 0.74 -0.52 16 2 C 0.51 8.27 7.94 87.66 0.70 8.97 16 3 O -0.59 -14.65 17.10 -3.03 -0.05 -14.70 16 4 N -0.72 -10.60 5.53 -466.79 -2.58 -13.18 16 5 C 0.10 1.45 4.53 85.63 0.39 1.83 16 6 C 0.51 9.34 7.78 87.66 0.68 10.02 16 7 O -0.57 -13.65 15.14 -3.04 -0.05 -13.70 16 8 N -0.61 -9.98 2.54 -817.32 -2.08 -12.06 16 9 C 0.07 0.85 6.54 86.35 0.56 1.41 16 10 C 0.04 0.60 6.60 72.08 0.48 1.07 16 11 O -0.37 -8.80 8.93 -148.98 -1.33 -10.13 16 12 C 0.12 2.63 0.68 -10.72 -0.01 2.62 16 13 C -0.09 -2.17 4.94 30.58 0.15 -2.01 16 14 C -0.11 -3.53 5.25 30.59 0.16 -3.37 16 15 C 0.17 6.90 2.77 44.99 0.12 7.02 16 16 N -0.74 -38.09 5.12 -322.92 -1.65 -39.74 16 17 C -0.23 -13.28 9.93 84.03 0.83 -12.44 16 18 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 19 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 21 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 C -0.11 -4.14 5.36 30.59 0.16 -3.97 16 26 C -0.13 -3.42 4.19 30.58 0.13 -3.29 16 27 C 0.10 1.79 5.30 86.36 0.46 2.25 16 28 H 0.10 0.34 7.91 -2.39 -0.02 0.32 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.42 5.60 7.27 -92.71 -0.67 4.93 16 32 H 0.11 1.35 8.01 -2.39 -0.02 1.33 16 33 H 0.10 1.45 7.66 -2.39 -0.02 1.43 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 0.86 6.06 -2.39 -0.01 0.84 16 36 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 0.97 6.26 -2.39 -0.01 0.96 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 1.99 7.70 -2.39 -0.02 1.97 16 42 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 43 H 0.37 20.67 7.80 -92.71 -0.72 19.95 16 44 H 0.25 15.05 8.31 -92.70 -0.77 14.27 16 45 H 0.05 1.82 7.70 -2.39 -0.02 1.80 16 46 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.60 6.11 -2.38 -0.01 1.58 16 48 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.09 1.96 7.07 -2.39 -0.02 1.94 16 50 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -76.99 391.18 0.16 -76.83 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -0.44 Total: 32.25 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.03 Total: 5.48 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -6.03 Total: -125.03 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.43 Total: -38.53 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -76.99 0.16 -76.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105453783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.499 kcal (2) G-P(sol) polarization free energy of solvation -76.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds