Wall clock time and date at job start Sat Apr 11 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 120.00400 * 2 1 4 4 N 1.34777 * 119.99715 * 180.02562 * 2 1 3 5 5 C 1.47423 * 125.64901 * 359.95366 * 4 2 1 6 6 C 1.54914 * 104.83164 * 204.16513 * 5 4 2 7 7 C 1.55152 * 101.58312 * 322.99082 * 6 5 4 8 8 H 1.08994 * 110.87727 * 277.07043 * 7 6 5 9 9 C 1.50700 * 110.72159 * 153.86250 * 7 6 5 10 10 O 1.21286 * 119.99643 * 5.02528 * 9 7 6 11 11 N 1.34771 * 120.00302 * 185.02454 * 9 7 6 12 12 C 1.46501 * 120.00224 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47324 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.55568 * 305.12458 * 13 12 11 15 15 C 1.53297 * 109.51138 * 184.99506 * 13 12 11 16 16 N 1.47152 * 108.41412 * 187.78983 * 15 13 12 17 17 C 1.36940 * 120.98519 * 230.53891 * 16 15 13 18 18 H 1.08004 * 119.99946 * 153.29013 * 17 16 15 19 19 C 1.38806 * 119.99744 * 333.29281 * 17 16 15 20 20 N 1.31619 * 120.00209 * 343.56188 * 19 17 16 21 21 Si 1.86806 * 119.99792 * 163.56516 * 19 17 16 22 22 H 1.48499 * 109.47280 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47031 * 120.00036 * 21 19 17 24 24 H 1.48500 * 109.46845 * 239.99891 * 21 19 17 25 25 C 1.47155 * 118.03584 * 50.52244 * 16 15 13 26 26 C 1.53295 * 108.38271 * 309.46293 * 25 16 15 27 27 O 1.42963 * 109.22476 * 52.30036 * 26 25 16 28 28 C 1.47026 * 125.64751 * 179.97438 * 4 2 1 29 29 H 1.09006 * 109.46925 * 269.99777 * 1 2 3 30 30 H 1.09000 * 109.47033 * 29.99393 * 1 2 3 31 31 H 1.08993 * 109.47100 * 149.99756 * 1 2 3 32 32 H 1.08992 * 110.36746 * 323.00363 * 5 4 2 33 33 H 1.08997 * 110.36404 * 85.33239 * 5 4 2 34 34 H 1.08998 * 111.00210 * 204.91501 * 6 5 4 35 35 H 1.09003 * 111.00269 * 81.06907 * 6 5 4 36 36 H 0.96998 * 120.00142 * 0.02562 * 11 9 7 37 37 H 1.08994 * 109.47501 * 59.99808 * 12 11 9 38 38 H 1.09007 * 109.46668 * 299.99818 * 12 11 9 39 39 H 1.09003 * 109.46535 * 299.87480 * 14 13 12 40 40 H 1.08999 * 109.46451 * 59.87231 * 14 13 12 41 41 H 1.08998 * 109.47034 * 179.87177 * 14 13 12 42 42 H 1.08999 * 109.68115 * 68.05763 * 15 13 12 43 43 H 1.08996 * 109.68376 * 307.53282 * 15 13 12 44 44 H 0.97008 * 119.99875 * 179.97438 * 20 19 17 45 45 H 1.09005 * 109.68400 * 69.18368 * 25 16 15 46 46 H 1.09001 * 109.68383 * 189.74262 * 25 16 15 47 47 H 1.08999 * 109.51685 * 172.22754 * 26 25 16 48 48 H 1.09003 * 109.51228 * 292.32531 * 26 25 16 49 49 H 1.09006 * 109.88185 * 59.48882 * 28 4 2 50 50 H 1.09000 * 109.88533 * 298.32098 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5729 -2.5103 -0.0002 6 6 2.6545 -3.4350 0.6121 7 6 3.9548 -2.8234 0.0269 8 1 4.1410 -3.1971 -0.9799 9 6 5.1302 -3.1096 0.9257 10 8 4.9903 -3.8191 1.8994 11 7 6.3366 -2.5773 0.6475 12 6 7.4793 -2.8560 1.5209 13 6 8.7184 -2.1362 0.9849 14 6 8.9519 -2.5355 -0.4735 15 6 9.9403 -2.5261 1.8246 16 7 11.0748 -1.6841 1.4133 17 6 12.2851 -2.2391 1.0933 18 1 12.9493 -1.7298 0.4107 19 6 12.6583 -3.4564 1.6463 20 7 12.0257 -3.9208 2.7029 21 14 14.0585 -4.4353 0.8908 22 1 14.6004 -3.7009 -0.2806 23 1 15.1327 -4.6215 1.8991 24 1 13.5551 -5.7620 0.4531 25 6 10.8703 -0.2280 1.3556 26 6 9.6037 0.0503 0.5381 27 8 8.5231 -0.7222 1.0668 28 6 3.6440 -1.3120 -0.0011 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 0.6735 -2.5194 0.6153 33 1 1.3400 -2.8215 -1.0185 34 1 2.5226 -4.4644 0.2789 35 1 2.6496 -3.3746 1.7004 36 1 6.4484 -2.0096 -0.1310 37 1 7.6646 -3.9298 1.5453 38 1 7.2613 -2.5019 2.5285 39 1 9.1057 -3.6129 -0.5349 40 1 8.0827 -2.2579 -1.0697 41 1 9.8336 -2.0202 -0.8545 42 1 10.1819 -3.5755 1.6558 43 1 9.7267 -2.3639 2.8810 44 1 12.2863 -4.7717 3.0891 45 1 10.7499 0.1662 2.3647 46 1 11.7277 0.2445 0.8762 47 1 9.3570 1.1103 0.5983 48 1 9.7742 -0.2253 -0.5026 49 1 4.0644 -0.8308 0.8820 50 1 4.0604 -0.8644 -0.9035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108369107.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:36 Heat of formation + Delta-G solvation = -87.182578 kcal Electronic energy + Delta-G solvation = -30782.214044 eV Core-core repulsion = 26617.356832 eV Total energy + Delta-G solvation = -4164.857211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.68974 -39.61916 -38.84580 -37.24745 -35.00843 -34.35887 -32.61835 -31.66047 -31.27008 -30.18462 -29.17654 -27.96686 -26.51552 -25.62200 -24.12433 -23.25194 -22.44640 -21.12937 -20.07647 -19.68255 -18.72174 -17.71441 -17.28196 -17.03848 -16.39396 -15.94001 -15.67259 -15.42050 -15.21388 -14.85003 -14.52702 -14.33124 -14.03543 -13.81000 -13.70452 -13.52588 -13.26648 -13.08233 -13.01148 -12.83404 -12.70576 -12.47747 -12.30806 -12.05179 -11.88190 -11.66703 -11.60630 -11.25037 -11.21235 -11.04578 -10.85526 -10.68315 -10.33395 -10.25429 -10.22431 -10.03475 -9.82910 -9.54843 -9.06139 -9.01550 -8.89340 -8.56753 -6.75822 -5.87018 -3.30894 2.33039 2.49743 2.71888 3.22905 3.31597 3.39604 3.41246 3.96236 4.12967 4.22854 4.41319 4.48608 4.57477 4.80241 4.84219 4.88613 4.95168 5.02308 5.10600 5.15174 5.31616 5.40548 5.42346 5.45011 5.47741 5.51639 5.60235 5.64218 5.83456 5.88879 5.90376 5.91981 5.98568 6.06267 6.12164 6.28193 6.41933 6.53961 6.64682 6.72958 6.80706 7.04835 7.15023 7.43903 7.57773 7.69008 7.84435 7.86807 8.24928 8.30849 9.08481 9.71382 10.28836 11.20959 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.002487 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.028474 B =11256.706731 C =12091.905542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.543 6.543 4 N -0.620 5.620 5 C 0.097 3.903 6 C -0.112 4.112 7 C -0.124 4.124 8 H 0.112 0.888 9 C 0.520 3.480 10 O -0.539 6.539 11 N -0.714 5.714 12 C 0.139 3.861 13 C 0.078 3.922 14 C -0.162 4.162 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 C 0.117 3.883 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.402 0.598 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.029 0.971 44 H 0.255 0.745 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.048 0.952 49 H 0.076 0.924 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.902 1.972 -8.708 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.314 3.686 3 O -0.420 6.420 4 N -0.356 5.356 5 C -0.025 4.025 6 C -0.150 4.150 7 C -0.146 4.146 8 H 0.130 0.870 9 C 0.304 3.696 10 O -0.416 6.416 11 N -0.366 5.366 12 C 0.015 3.985 13 C 0.037 3.963 14 C -0.219 4.219 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.382 4.382 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.215 1.215 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.303 6.303 28 C -0.006 4.006 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.238 0.762 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.066 0.934 49 H 0.095 0.905 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.800 2.049 -7.831 23.254 hybrid contribution 1.165 -0.446 -0.790 1.477 sum -20.634 1.603 -8.621 22.420 Atomic orbital electron populations 1.21883 0.91202 1.04862 1.04851 1.20547 0.90422 0.81931 0.75708 1.90759 1.70742 1.30654 1.49841 1.48565 1.07006 1.06171 1.73865 1.22454 0.97246 0.81590 1.01253 1.22693 0.90939 0.98967 1.02431 1.22427 0.94851 0.96333 1.00994 0.87006 1.20123 0.83666 0.80137 0.85656 1.90719 1.84327 1.37954 1.28601 1.46071 1.09084 1.51077 1.30341 1.21371 0.83218 0.99854 0.94055 1.22547 0.95900 0.81554 0.96343 1.22204 1.01339 1.02373 0.95994 1.21285 0.83356 0.97824 0.94213 1.44004 1.08623 0.99138 1.79672 1.19198 0.94692 1.03784 1.20574 0.91384 1.25056 0.98420 1.00242 0.95847 1.70024 1.43282 1.20758 1.20501 0.86221 0.81766 0.80085 0.78697 1.20249 1.21630 1.21474 1.21606 0.95435 0.87279 0.97438 1.23036 0.88719 0.94273 0.97140 1.87831 1.42300 1.16814 1.83378 1.21828 0.81251 0.94229 1.03324 0.88747 0.88785 0.90142 0.89955 0.90835 0.88991 0.88946 0.76238 0.89890 0.90767 0.91857 0.94018 0.90745 0.88582 0.95250 0.93475 0.95626 0.92029 0.90146 0.93396 0.90538 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 9.67 36.01 0.35 -0.62 16 2 C 0.52 5.53 7.96 -10.98 -0.09 5.44 16 3 O -0.54 -8.33 17.43 5.56 0.10 -8.24 16 4 N -0.62 -5.69 3.33 -170.51 -0.57 -6.25 16 5 C 0.10 0.57 6.27 -2.53 -0.02 0.55 16 6 C -0.11 -0.86 6.14 -24.58 -0.15 -1.01 16 7 C -0.12 -1.12 3.34 -89.94 -0.30 -1.42 16 8 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 9 C 0.52 6.85 7.02 -10.99 -0.08 6.78 16 10 O -0.54 -9.10 15.76 5.55 0.09 -9.02 16 11 N -0.71 -9.63 5.14 -60.30 -0.31 -9.94 16 12 C 0.14 2.31 4.85 -4.04 -0.02 2.29 16 13 C 0.08 1.41 0.78 -90.47 -0.07 1.34 16 14 C -0.16 -2.67 7.87 37.16 0.29 -2.38 16 15 C 0.16 3.68 4.11 -3.53 -0.01 3.67 16 16 N -0.59 -14.27 2.57 -171.82 -0.44 -14.71 16 17 C -0.25 -6.68 9.65 -15.06 -0.15 -6.82 16 18 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 19 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 20 N -0.90 -25.49 11.14 55.49 0.62 -24.87 16 21 Si 0.90 21.10 29.58 -169.99 -5.03 16.07 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.11 2.23 6.73 -3.53 -0.02 2.21 16 26 C 0.05 0.80 6.60 37.31 0.25 1.05 16 27 O -0.38 -7.06 10.18 -35.23 -0.36 -7.42 16 28 C 0.12 1.18 6.40 -3.06 -0.02 1.16 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.28 7.18 -51.93 -0.37 -0.10 16 32 H 0.08 0.34 7.55 -51.93 -0.39 -0.06 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.90 7.49 -51.93 -0.39 0.51 16 36 H 0.40 4.77 6.97 -40.82 -0.28 4.49 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 41 H 0.07 1.36 6.11 -51.93 -0.32 1.04 16 42 H 0.10 2.43 6.16 -51.93 -0.32 2.11 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.05 0.80 6.25 -51.93 -0.32 0.47 16 49 H 0.08 0.95 7.81 -51.93 -0.41 0.55 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -34.10 392.72 -8.29 -42.39 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -8.18 Total: 3.84 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -0.12 Total: 12.23 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.70 Total: -55.78 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.17 Total: -24.67 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.10 -8.29 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108369107.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.791 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds