Wall clock time and date at job start Sat Apr 11 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 120.00400 * 2 1 4 4 N 1.34777 * 119.99715 * 180.02562 * 2 1 3 5 5 C 1.47423 * 125.64901 * 359.95366 * 4 2 1 6 6 C 1.54914 * 104.83164 * 204.16513 * 5 4 2 7 7 C 1.55152 * 101.58312 * 322.99082 * 6 5 4 8 8 H 1.08994 * 110.87727 * 277.07043 * 7 6 5 9 9 C 1.50700 * 110.72159 * 153.86250 * 7 6 5 10 10 O 1.21286 * 119.99643 * 5.02528 * 9 7 6 11 11 N 1.34771 * 120.00302 * 185.02454 * 9 7 6 12 12 C 1.46501 * 120.00224 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.47324 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.55568 * 305.12458 * 13 12 11 15 15 C 1.53297 * 109.51138 * 184.99506 * 13 12 11 16 16 N 1.47152 * 108.41412 * 187.78983 * 15 13 12 17 17 C 1.36940 * 120.98519 * 230.53891 * 16 15 13 18 18 H 1.08004 * 119.99946 * 153.29013 * 17 16 15 19 19 C 1.38806 * 119.99744 * 333.29281 * 17 16 15 20 20 N 1.31619 * 120.00209 * 343.56188 * 19 17 16 21 21 Si 1.86806 * 119.99792 * 163.56516 * 19 17 16 22 22 H 1.48499 * 109.47280 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47031 * 120.00036 * 21 19 17 24 24 H 1.48500 * 109.46845 * 239.99891 * 21 19 17 25 25 C 1.47155 * 118.03584 * 50.52244 * 16 15 13 26 26 C 1.53295 * 108.38271 * 309.46293 * 25 16 15 27 27 O 1.42963 * 109.22476 * 52.30036 * 26 25 16 28 28 C 1.47026 * 125.64751 * 179.97438 * 4 2 1 29 29 H 1.09006 * 109.46925 * 269.99777 * 1 2 3 30 30 H 1.09000 * 109.47033 * 29.99393 * 1 2 3 31 31 H 1.08993 * 109.47100 * 149.99756 * 1 2 3 32 32 H 1.08992 * 110.36746 * 323.00363 * 5 4 2 33 33 H 1.08997 * 110.36404 * 85.33239 * 5 4 2 34 34 H 1.08998 * 111.00210 * 204.91501 * 6 5 4 35 35 H 1.09003 * 111.00269 * 81.06907 * 6 5 4 36 36 H 0.96998 * 120.00142 * 0.02562 * 11 9 7 37 37 H 1.08994 * 109.47501 * 59.99808 * 12 11 9 38 38 H 1.09007 * 109.46668 * 299.99818 * 12 11 9 39 39 H 1.09003 * 109.46535 * 299.87480 * 14 13 12 40 40 H 1.08999 * 109.46451 * 59.87231 * 14 13 12 41 41 H 1.08998 * 109.47034 * 179.87177 * 14 13 12 42 42 H 1.08999 * 109.68115 * 68.05763 * 15 13 12 43 43 H 1.08996 * 109.68376 * 307.53282 * 15 13 12 44 44 H 0.97008 * 119.99875 * 179.97438 * 20 19 17 45 45 H 1.09005 * 109.68400 * 69.18368 * 25 16 15 46 46 H 1.09001 * 109.68383 * 189.74262 * 25 16 15 47 47 H 1.08999 * 109.51685 * 172.22754 * 26 25 16 48 48 H 1.09003 * 109.51228 * 292.32531 * 26 25 16 49 49 H 1.09006 * 109.88185 * 59.48882 * 28 4 2 50 50 H 1.09000 * 109.88533 * 298.32098 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5729 -2.5103 -0.0002 6 6 2.6545 -3.4350 0.6121 7 6 3.9548 -2.8234 0.0269 8 1 4.1410 -3.1971 -0.9799 9 6 5.1302 -3.1096 0.9257 10 8 4.9903 -3.8191 1.8994 11 7 6.3366 -2.5773 0.6475 12 6 7.4793 -2.8560 1.5209 13 6 8.7184 -2.1362 0.9849 14 6 8.9519 -2.5355 -0.4735 15 6 9.9403 -2.5261 1.8246 16 7 11.0748 -1.6841 1.4133 17 6 12.2851 -2.2391 1.0933 18 1 12.9493 -1.7298 0.4107 19 6 12.6583 -3.4564 1.6463 20 7 12.0257 -3.9208 2.7029 21 14 14.0585 -4.4353 0.8908 22 1 14.6004 -3.7009 -0.2806 23 1 15.1327 -4.6215 1.8991 24 1 13.5551 -5.7620 0.4531 25 6 10.8703 -0.2280 1.3556 26 6 9.6037 0.0503 0.5381 27 8 8.5231 -0.7222 1.0668 28 6 3.6440 -1.3120 -0.0011 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 0.6735 -2.5194 0.6153 33 1 1.3400 -2.8215 -1.0185 34 1 2.5226 -4.4644 0.2789 35 1 2.6496 -3.3746 1.7004 36 1 6.4484 -2.0096 -0.1310 37 1 7.6646 -3.9298 1.5453 38 1 7.2613 -2.5019 2.5285 39 1 9.1057 -3.6129 -0.5349 40 1 8.0827 -2.2579 -1.0697 41 1 9.8336 -2.0202 -0.8545 42 1 10.1819 -3.5755 1.6558 43 1 9.7267 -2.3639 2.8810 44 1 12.2863 -4.7717 3.0891 45 1 10.7499 0.1662 2.3647 46 1 11.7277 0.2445 0.8762 47 1 9.3570 1.1103 0.5983 48 1 9.7742 -0.2253 -0.5026 49 1 4.0644 -0.8308 0.8820 50 1 4.0604 -0.8644 -0.9035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108369107.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:35 Heat of formation + Delta-G solvation = -112.220568 kcal Electronic energy + Delta-G solvation = -30783.299773 eV Core-core repulsion = 26617.356832 eV Total energy + Delta-G solvation = -4165.942940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60782 -40.82485 -40.12898 -38.11625 -36.56519 -35.96899 -33.59544 -33.23199 -32.83976 -30.76083 -29.90951 -29.55972 -28.06796 -27.19029 -25.04655 -24.88189 -23.43406 -22.59613 -21.12989 -20.37532 -20.26740 -18.97338 -18.59385 -17.99964 -17.44097 -17.37322 -16.87732 -16.64421 -16.43417 -16.11395 -15.90577 -15.65709 -15.45757 -15.24431 -14.90888 -14.63906 -14.48982 -14.42842 -14.02824 -13.78326 -13.62420 -13.37980 -13.25235 -13.18666 -12.95426 -12.93440 -12.81914 -12.63444 -12.55161 -12.44544 -12.37827 -12.12081 -11.96644 -11.87910 -11.84296 -11.20192 -11.07490 -10.91820 -10.74724 -10.51887 -10.15463 -9.73765 -8.72857 -7.90733 -5.38349 1.44665 1.46982 1.50411 1.57157 1.58273 1.93702 2.17675 2.47389 2.77528 3.23940 3.28299 3.45856 3.48904 3.75485 3.87828 3.92478 4.00582 4.09183 4.16870 4.24653 4.33787 4.40092 4.43865 4.49882 4.54740 4.60142 4.62289 4.64422 4.69551 4.75273 4.77791 4.82867 4.95408 4.97381 5.03643 5.08759 5.10057 5.18964 5.20796 5.25017 5.35010 5.36219 5.52157 5.60722 6.28413 6.35936 6.47177 6.49905 7.05859 7.10182 7.17425 7.74541 8.29138 9.15163 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.002487 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.028474 B =11256.706731 C =12091.905542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.514 3.486 3 O -0.604 6.604 4 N -0.621 5.621 5 C 0.100 3.900 6 C -0.112 4.112 7 C -0.110 4.110 8 H 0.148 0.852 9 C 0.517 3.483 10 O -0.579 6.579 11 N -0.706 5.706 12 C 0.149 3.851 13 C 0.092 3.908 14 C -0.152 4.152 15 C 0.168 3.832 16 N -0.607 5.607 17 C -0.258 4.258 18 H 0.073 0.927 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.289 1.289 25 C 0.102 3.898 26 C 0.053 3.947 27 O -0.388 6.388 28 C 0.116 3.884 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.068 0.932 43 H -0.010 1.010 44 H 0.250 0.750 45 H 0.010 0.990 46 H 0.072 0.928 47 H 0.114 0.886 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.098 1.847 -11.736 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.306 3.694 3 O -0.486 6.486 4 N -0.355 5.355 5 C -0.021 4.021 6 C -0.150 4.150 7 C -0.132 4.132 8 H 0.166 0.834 9 C 0.304 3.696 10 O -0.459 6.459 11 N -0.358 5.358 12 C 0.024 3.976 13 C 0.051 3.949 14 C -0.210 4.210 15 C 0.041 3.959 16 N -0.331 5.331 17 C -0.388 4.388 18 H 0.091 0.909 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.796 3.204 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.215 1.215 25 C -0.024 4.024 26 C -0.025 4.025 27 O -0.308 6.308 28 C -0.008 4.008 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.251 0.749 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.008 0.992 44 H 0.060 0.940 45 H 0.028 0.972 46 H 0.091 0.909 47 H 0.131 0.869 48 H 0.081 0.919 49 H 0.062 0.938 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.025 1.930 -10.900 26.453 hybrid contribution 1.872 -0.357 0.240 1.921 sum -22.153 1.572 -10.660 24.635 Atomic orbital electron populations 1.21913 0.87289 1.06509 1.06149 1.21480 0.92290 0.81260 0.74419 1.90726 1.72244 1.32829 1.52783 1.48720 1.06661 1.07373 1.72751 1.22707 0.96995 0.78941 1.03440 1.22730 0.90738 1.00638 1.00935 1.22433 0.93275 0.95805 1.01651 0.83435 1.20904 0.84245 0.78883 0.85523 1.90706 1.84925 1.39748 1.30501 1.45932 1.08467 1.51319 1.30110 1.21004 0.83985 0.99016 0.93585 1.22219 0.94138 0.81774 0.96754 1.22105 1.02368 1.01914 0.94585 1.21060 0.85376 0.96425 0.93059 1.44257 1.08431 1.00826 1.79568 1.19537 0.95379 1.03877 1.19985 0.90885 1.25818 1.01024 1.01389 0.96335 1.70194 1.45107 1.20918 1.22080 0.85205 0.78717 0.78530 0.77989 1.18760 1.22278 1.21542 1.21812 0.97894 0.85191 0.97458 1.23093 0.86570 0.95864 0.96930 1.87843 1.42588 1.16652 1.83673 1.21740 0.82355 0.94597 1.02114 0.87431 0.88700 0.86958 0.87636 0.87617 0.86879 0.91656 0.74934 0.90663 0.93061 0.92302 0.90269 0.92066 0.91320 0.99186 0.94038 0.97181 0.90925 0.86858 0.91929 0.93839 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.67 71.24 0.69 -0.68 16 2 C 0.51 10.09 7.96 87.66 0.70 10.79 16 3 O -0.60 -18.69 17.43 -3.03 -0.05 -18.75 16 4 N -0.62 -10.00 3.33 -811.78 -2.70 -12.70 16 5 C 0.10 0.76 6.27 86.86 0.54 1.31 16 6 C -0.11 -1.42 6.14 31.99 0.20 -1.22 16 7 C -0.11 -1.73 3.34 -10.35 -0.03 -1.76 16 8 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 9 C 0.52 13.32 7.02 87.66 0.62 13.94 16 10 O -0.58 -19.86 15.76 -3.05 -0.05 -19.91 16 11 N -0.71 -18.57 5.14 -463.07 -2.38 -20.95 16 12 C 0.15 5.11 4.85 86.38 0.42 5.53 16 13 C 0.09 3.39 0.78 -10.70 -0.01 3.38 16 14 C -0.15 -4.82 7.87 71.98 0.57 -4.25 16 15 C 0.17 8.08 4.11 86.35 0.35 8.44 16 16 N -0.61 -29.94 2.57 -697.53 -1.79 -31.73 16 17 C -0.26 -13.76 9.65 84.03 0.81 -12.95 16 18 H 0.07 3.76 7.88 -2.91 -0.02 3.73 16 19 C -0.05 -2.76 4.95 84.86 0.42 -2.34 16 20 N -0.94 -55.16 11.14 21.65 0.24 -54.92 16 21 Si 0.97 43.98 29.58 68.60 2.03 46.01 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 25 C 0.10 4.17 6.73 86.35 0.58 4.76 16 26 C 0.05 1.73 6.60 72.08 0.48 2.21 16 27 O -0.39 -14.00 10.18 -148.98 -1.52 -15.52 16 28 C 0.12 2.17 6.40 86.73 0.56 2.73 16 29 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 0.24 7.18 -2.39 -0.02 0.22 16 32 H 0.11 0.38 7.55 -2.39 -0.02 0.36 16 33 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.21 7.49 -2.39 -0.02 1.19 16 36 H 0.41 8.97 6.97 -92.71 -0.65 8.33 16 37 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.08 1.90 6.57 -2.39 -0.02 1.88 16 41 H 0.06 2.13 6.11 -2.39 -0.01 2.11 16 42 H 0.07 3.68 6.16 -2.39 -0.01 3.66 16 43 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 45 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 46 H 0.07 2.77 7.96 -2.39 -0.02 2.75 16 47 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 48 H 0.06 1.92 6.25 -2.39 -0.01 1.90 16 49 H 0.04 1.10 7.81 -2.38 -0.02 1.08 16 50 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -79.76 392.72 0.96 -78.80 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.30 Total: 19.80 kcal Atomic # 6 Polarization: 22.98 SS G_CDS: 6.88 Total: 29.87 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -6.63 Total: -120.31 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -1.62 Total: -54.17 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -79.76 0.96 -78.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108369107.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.421 kcal (2) G-P(sol) polarization free energy of solvation -79.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds