Wall clock time and date at job start Sat Apr 11 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 119.99921 * 2 1 4 4 N 1.34782 * 119.99872 * 179.97438 * 2 1 3 5 5 C 1.47018 * 125.65121 * 0.04713 * 4 2 1 6 6 C 1.54324 * 107.27092 * 181.01896 * 5 4 2 7 7 C 1.55146 * 102.94352 * 22.19462 * 6 5 4 8 8 H 1.09005 * 111.00993 * 82.56935 * 7 6 5 9 9 C 1.50701 * 111.00630 * 206.42356 * 7 6 5 10 10 O 1.21282 * 119.99737 * 353.64400 * 9 7 6 11 11 N 1.34772 * 120.00377 * 173.64565 * 9 7 6 12 12 C 1.46504 * 120.00071 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.46989 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.51337 * 305.10411 * 13 12 11 15 15 C 1.53291 * 109.51024 * 185.00446 * 13 12 11 16 16 N 1.47154 * 108.38277 * 187.77370 * 15 13 12 17 17 C 1.36940 * 120.98368 * 230.55498 * 16 15 13 18 18 H 1.07998 * 119.99661 * 26.57807 * 17 16 15 19 19 C 1.38810 * 119.99989 * 206.58383 * 17 16 15 20 20 N 1.31614 * 120.00204 * 17.03093 * 19 17 16 21 21 Si 1.86805 * 119.99562 * 197.02852 * 19 17 16 22 22 H 1.48505 * 109.46987 * 94.15293 * 21 19 17 23 23 H 1.48501 * 109.47010 * 214.14972 * 21 19 17 24 24 H 1.48496 * 109.47225 * 334.14917 * 21 19 17 25 25 C 1.47151 * 118.03552 * 50.53410 * 16 15 13 26 26 C 1.53296 * 108.38581 * 309.46286 * 25 16 15 27 27 O 1.42960 * 109.22105 * 52.30249 * 26 25 16 28 28 C 1.47421 * 125.64459 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.47135 * 240.00177 * 1 2 3 30 30 H 1.08997 * 109.46923 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46585 * 120.00600 * 1 2 3 32 32 H 1.08999 * 109.87935 * 300.43876 * 5 4 2 33 33 H 1.09003 * 109.88513 * 61.44490 * 5 4 2 34 34 H 1.09003 * 110.71886 * 263.82285 * 6 5 4 35 35 H 1.09006 * 110.71577 * 140.55779 * 6 5 4 36 36 H 0.97000 * 119.99765 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.47127 * 300.00258 * 12 11 9 38 38 H 1.08994 * 109.46638 * 60.00809 * 12 11 9 39 39 H 1.09002 * 109.46873 * 59.99797 * 14 13 12 40 40 H 1.08989 * 109.47057 * 180.02562 * 14 13 12 41 41 H 1.09004 * 109.46836 * 300.00328 * 14 13 12 42 42 H 1.08997 * 109.68128 * 307.49182 * 15 13 12 43 43 H 1.08997 * 109.68677 * 68.04927 * 15 13 12 44 44 H 0.97003 * 119.99890 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.68163 * 69.18949 * 25 16 15 46 46 H 1.09003 * 109.68071 * 189.69932 * 25 16 15 47 47 H 1.08991 * 109.51184 * 172.22805 * 26 25 16 48 48 H 1.09000 * 109.51099 * 292.37940 * 26 25 16 49 49 H 1.08999 * 110.37153 * 37.07577 * 28 4 2 50 50 H 1.09000 * 110.46556 * 274.79817 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.5747 -2.5067 0.0001 6 6 2.7282 -3.5316 0.0272 7 6 3.9080 -2.7116 0.6124 8 1 3.8584 -2.6774 1.7008 9 6 5.2317 -3.2651 0.1514 10 8 5.2689 -4.2963 -0.4859 11 7 6.3742 -2.6143 0.4473 12 6 7.6610 -3.1527 -0.0004 13 6 8.7895 -2.2300 0.4645 14 6 8.5192 -0.8056 -0.0245 15 6 10.1231 -2.7235 -0.1082 16 7 11.2085 -1.9380 0.5003 17 6 12.1661 -1.3401 -0.2748 18 1 11.9396 -1.0609 -1.2932 19 6 13.4278 -1.0929 0.2484 20 7 13.8202 -1.7131 1.3409 21 14 14.5688 0.1199 -0.5982 22 1 14.4171 1.4596 0.0243 23 1 15.9740 -0.3376 -0.4520 24 1 14.2224 0.2018 -2.0399 25 6 11.2342 -1.8135 1.9663 26 6 9.8465 -1.3644 2.4379 27 8 8.8575 -2.2408 1.8924 28 6 3.6480 -1.3123 0.0001 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 0.9482 -2.6302 0.8835 33 1 0.9761 -2.6424 -0.9006 34 1 2.9607 -3.8772 -0.9801 35 1 2.4824 -4.3715 0.6771 36 1 6.3445 -1.7897 0.9573 37 1 7.8065 -4.1463 0.4237 38 1 7.6690 -3.2173 -1.0884 39 1 7.5716 -0.4548 0.3845 40 1 9.3236 -0.1490 0.3067 41 1 8.4697 -0.7985 -1.1134 42 1 10.2563 -3.7789 0.1290 43 1 10.1318 -2.5857 -1.1894 44 1 14.7018 -1.5401 1.7067 45 1 11.4794 -2.7775 2.4123 46 1 11.9793 -1.0737 2.2589 47 1 9.8031 -1.3990 3.5264 48 1 9.6582 -0.3462 2.0975 49 1 4.1060 -0.5379 0.6154 50 1 4.0352 -1.2655 -1.0178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108369109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:41 Heat of formation + Delta-G solvation = -112.191485 kcal Electronic energy + Delta-G solvation = -30548.292823 eV Core-core repulsion = 26382.351144 eV Total energy + Delta-G solvation = -4165.941679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58342 -40.83024 -40.12385 -38.11656 -36.62516 -35.87448 -33.74327 -33.22282 -32.58921 -30.72129 -29.98741 -29.71312 -28.05242 -27.12719 -25.00315 -24.84725 -23.48384 -22.61098 -21.12527 -20.37589 -20.19591 -18.95306 -18.58649 -18.04857 -17.48502 -17.14348 -16.93812 -16.71798 -16.41941 -16.16243 -15.93517 -15.61680 -15.32239 -15.23445 -15.00403 -14.63953 -14.49187 -14.37973 -14.04863 -13.78864 -13.65700 -13.45634 -13.25772 -13.12042 -12.98549 -12.93525 -12.80492 -12.62960 -12.57035 -12.44641 -12.31467 -12.08871 -12.04252 -11.87043 -11.83426 -11.22151 -11.08361 -10.86118 -10.77910 -10.50870 -10.12169 -9.74052 -8.73142 -7.91262 -5.38032 1.45354 1.46749 1.51046 1.55673 1.60321 1.90502 2.21621 2.47481 2.76307 3.23559 3.27641 3.46439 3.48471 3.77197 3.87541 3.89946 3.95461 4.04098 4.18366 4.22599 4.29422 4.44209 4.49485 4.50467 4.57561 4.59727 4.64164 4.65639 4.70156 4.75083 4.78433 4.83873 4.86674 4.97579 4.99732 5.05076 5.11534 5.15995 5.21289 5.27243 5.36355 5.39587 5.55375 5.61727 6.27343 6.34467 6.47588 6.49847 7.06276 7.10396 7.17301 7.74490 8.28490 9.14569 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.002319 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.224126 B =12068.809909 C =12728.315484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.516 3.484 3 O -0.602 6.602 4 N -0.620 5.620 5 C 0.101 3.899 6 C -0.109 4.109 7 C -0.114 4.114 8 H 0.133 0.867 9 C 0.524 3.476 10 O -0.575 6.575 11 N -0.709 5.709 12 C 0.147 3.853 13 C 0.098 3.902 14 C -0.159 4.159 15 C 0.123 3.877 16 N -0.605 5.605 17 C -0.259 4.259 18 H 0.071 0.929 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.268 1.268 25 C 0.145 3.855 26 C 0.050 3.950 27 O -0.383 6.383 28 C 0.114 3.886 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.412 0.588 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.014 0.986 43 H 0.069 0.931 44 H 0.251 0.749 45 H -0.003 1.003 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.055 0.945 49 H 0.079 0.921 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.157 -0.798 0.045 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.308 3.692 3 O -0.484 6.484 4 N -0.354 5.354 5 C -0.020 4.020 6 C -0.147 4.147 7 C -0.136 4.136 8 H 0.151 0.849 9 C 0.311 3.689 10 O -0.454 6.454 11 N -0.361 5.361 12 C 0.022 3.978 13 C 0.057 3.943 14 C -0.216 4.216 15 C -0.004 4.004 16 N -0.329 5.329 17 C -0.388 4.388 18 H 0.089 0.911 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.193 1.193 25 C 0.019 3.981 26 C -0.027 4.027 27 O -0.303 6.303 28 C -0.009 4.009 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.249 0.751 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.032 0.968 43 H 0.087 0.913 44 H 0.060 0.940 45 H 0.015 0.985 46 H 0.084 0.916 47 H 0.123 0.877 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.825 -1.015 -0.246 28.844 hybrid contribution 1.929 0.859 -0.155 2.117 sum -26.896 -0.157 -0.401 26.899 Atomic orbital electron populations 1.21921 0.87446 1.06043 1.06495 1.21412 0.92223 0.81218 0.74378 1.90730 1.72251 1.32672 1.52731 1.48655 1.06735 1.07121 1.72897 1.22350 0.96101 0.79009 1.04570 1.22558 0.91528 0.97655 1.02973 1.22504 0.91838 0.95620 1.03663 0.84916 1.20639 0.85865 0.83680 0.78751 1.90703 1.87870 1.25355 1.41471 1.45963 1.05391 1.28189 1.56562 1.21118 0.80806 0.96268 0.99569 1.22062 0.94285 0.95965 0.81973 1.22167 1.01785 0.95678 1.01985 1.21587 0.87891 0.93437 0.97461 1.44229 1.28078 1.58472 1.02122 1.19501 0.90661 1.31560 0.97127 0.91119 1.25793 0.97975 1.01555 0.99258 1.70190 1.19499 1.43370 1.25110 0.85239 0.77684 0.78819 0.78615 1.21124 1.22365 1.19270 1.21279 0.95088 0.98143 0.83578 1.23170 0.87995 0.93105 0.98462 1.87830 1.57229 1.65591 1.19633 1.22034 0.82306 0.95687 1.00897 0.86754 0.89361 0.87124 0.88007 0.88917 0.90634 0.87554 0.75133 0.91930 0.89597 0.90859 0.92692 0.91214 0.96792 0.91265 0.94017 0.98497 0.91625 0.87679 0.92658 0.90278 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.51 71.24 0.68 -0.47 16 2 C 0.52 9.08 7.96 87.66 0.70 9.77 16 3 O -0.60 -17.24 17.34 -3.03 -0.05 -17.29 16 4 N -0.62 -8.76 3.33 -811.75 -2.70 -11.46 16 5 C 0.10 0.68 6.49 86.73 0.56 1.25 16 6 C -0.11 -1.18 6.03 31.78 0.19 -0.99 16 7 C -0.11 -1.65 3.43 -10.14 -0.03 -1.68 16 8 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 9 C 0.52 11.69 7.16 87.66 0.63 12.32 16 10 O -0.57 -17.04 15.79 -3.04 -0.05 -17.09 16 11 N -0.71 -16.14 5.15 -463.06 -2.38 -18.52 16 12 C 0.15 4.12 4.85 86.38 0.42 4.54 16 13 C 0.10 3.19 0.78 -10.69 -0.01 3.18 16 14 C -0.16 -4.67 7.86 71.98 0.57 -4.11 16 15 C 0.12 5.02 5.40 86.35 0.47 5.49 16 16 N -0.60 -29.74 2.57 -697.55 -1.79 -31.53 16 17 C -0.26 -13.87 9.64 84.03 0.81 -13.06 16 18 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 19 C -0.05 -2.77 4.94 84.86 0.42 -2.35 16 20 N -0.94 -54.80 11.17 21.65 0.24 -54.56 16 21 Si 0.97 44.29 29.59 68.60 2.03 46.32 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.14 6.90 5.44 86.35 0.47 7.37 16 26 C 0.05 1.83 6.60 72.08 0.48 2.31 16 27 O -0.38 -13.38 10.18 -148.98 -1.52 -14.90 16 28 C 0.11 1.89 6.33 86.87 0.55 2.44 16 29 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 31 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 1.11 7.50 -2.39 -0.02 1.10 16 35 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.41 8.18 6.99 -92.71 -0.65 7.53 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.07 1.75 6.57 -2.39 -0.02 1.74 16 40 H 0.05 1.92 6.12 -2.39 -0.01 1.90 16 41 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 2.71 7.95 -2.39 -0.02 2.69 16 44 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 45 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 46 H 0.07 3.48 6.17 -2.39 -0.01 3.46 16 47 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 48 H 0.06 1.95 6.26 -2.39 -0.01 1.93 16 49 H 0.08 1.43 8.04 -2.39 -0.02 1.41 16 50 H 0.06 1.19 8.03 -2.39 -0.02 1.17 16 Total: -1.00 -76.17 394.49 0.96 -75.21 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.29 Total: 17.79 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: 6.89 Total: 26.04 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -6.63 Total: -116.08 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -1.62 Total: -49.28 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -76.17 0.96 -75.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108369109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.985 kcal (2) G-P(sol) polarization free energy of solvation -76.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds