Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 119.99915 * 2 1 4 4 N 1.34776 * 119.99478 * 179.97438 * 2 1 3 5 5 C 1.47018 * 125.65121 * 359.97438 * 4 2 1 6 6 C 1.54323 * 107.27042 * 178.97218 * 5 4 2 7 7 C 1.55156 * 102.94382 * 337.80903 * 6 5 4 8 8 H 1.09001 * 111.00125 * 277.38657 * 7 6 5 9 9 C 1.50697 * 111.00579 * 153.57836 * 7 6 5 10 10 O 1.21277 * 120.00300 * 3.17347 * 9 7 6 11 11 N 1.34777 * 119.99890 * 183.17692 * 9 7 6 12 12 C 1.46503 * 119.99965 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47093 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.51128 * 60.00242 * 13 12 11 15 15 C 1.53291 * 109.51163 * 180.10339 * 13 12 11 16 16 N 1.47146 * 108.38644 * 172.27723 * 15 13 12 17 17 C 1.36942 * 120.98636 * 129.48379 * 16 15 13 18 18 H 1.08000 * 120.00498 * 206.23133 * 17 16 15 19 19 C 1.38813 * 119.99405 * 26.22514 * 17 16 15 20 20 N 1.31622 * 120.00087 * 16.91601 * 19 17 16 21 21 Si 1.86805 * 119.99865 * 196.90572 * 19 17 16 22 22 H 1.48496 * 109.46786 * 90.00410 * 21 19 17 23 23 H 1.48493 * 109.47191 * 210.00247 * 21 19 17 24 24 H 1.48503 * 109.47162 * 330.00596 * 21 19 17 25 25 C 1.47152 * 118.03724 * 309.46944 * 16 15 13 26 26 C 1.53297 * 108.38680 * 50.52933 * 25 16 15 27 27 O 1.42958 * 109.55194 * 299.87718 * 13 12 11 28 28 C 1.47474 * 125.62532 * 179.97438 * 4 2 1 29 29 H 1.08997 * 109.47481 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47397 * 300.00832 * 1 2 3 31 31 H 1.09003 * 109.46860 * 60.00504 * 1 2 3 32 32 H 1.08994 * 109.88741 * 59.55737 * 5 4 2 33 33 H 1.09001 * 110.01178 * 298.45927 * 5 4 2 34 34 H 1.08999 * 110.72265 * 219.44401 * 6 5 4 35 35 H 1.09004 * 110.87060 * 96.23715 * 6 5 4 36 36 H 0.97003 * 120.00028 * 0.02562 * 11 9 7 37 37 H 1.08999 * 109.46935 * 60.00610 * 12 11 9 38 38 H 1.08997 * 109.47378 * 300.00069 * 12 11 9 39 39 H 1.09000 * 109.47326 * 180.10064 * 14 13 12 40 40 H 1.09002 * 109.47324 * 60.10005 * 14 13 12 41 41 H 1.09007 * 109.47151 * 300.10223 * 14 13 12 42 42 H 1.09001 * 109.68094 * 291.99967 * 15 13 12 43 43 H 1.09001 * 109.68731 * 52.51510 * 15 13 12 44 44 H 0.97002 * 119.99818 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.68715 * 170.25970 * 25 16 15 46 46 H 1.09002 * 109.67745 * 290.80697 * 25 16 15 47 47 H 1.08998 * 109.51172 * 67.62422 * 26 25 16 48 48 H 1.08993 * 109.51069 * 187.73071 * 26 25 16 49 49 H 1.08998 * 110.34760 * 85.25316 * 28 4 2 50 50 H 1.08998 * 110.40683 * 322.92160 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.5745 -2.5066 0.0017 6 6 2.7279 -3.5316 -0.0245 7 6 3.9080 -2.7120 -0.6100 8 1 3.8589 -2.6792 -1.6984 9 6 5.2315 -3.2653 -0.1484 10 8 5.2648 -4.2644 0.5382 11 7 6.3783 -2.6499 -0.4986 12 6 7.6649 -3.1875 -0.0494 13 6 8.7987 -2.3080 -0.5807 14 6 8.6299 -0.8822 -0.0522 15 6 10.1456 -2.8712 -0.1134 16 7 11.2198 -2.1235 -0.7858 17 6 12.2569 -1.5844 -0.0723 18 1 12.7844 -0.7226 -0.4537 19 6 12.6302 -2.1457 1.1411 20 7 12.2352 -3.3620 1.4529 21 14 13.6933 -1.1750 2.3316 22 1 12.8240 -0.3907 3.2449 23 1 14.5286 -2.1113 3.1258 24 1 14.5723 -0.2514 1.5702 25 6 11.1469 -1.9723 -2.2477 26 6 9.7511 -1.4529 -2.6111 27 8 8.7643 -2.2947 -2.0098 28 6 3.6484 -1.3119 0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.9482 -2.6308 -0.8817 33 1 0.9764 -2.6446 0.9024 34 1 2.4824 -4.3719 -0.6739 35 1 2.9616 -3.8791 0.9819 36 1 6.3517 -1.8505 -1.0475 37 1 7.7857 -4.2032 -0.4260 38 1 7.6939 -3.1981 1.0401 39 1 9.4368 -0.2558 -0.4325 40 1 8.6606 -0.8925 1.0374 41 1 7.6719 -0.4823 -0.3849 42 1 10.2375 -2.7545 0.9665 43 1 10.2129 -3.9271 -0.3755 44 1 12.4964 -3.7543 2.3007 45 1 11.9019 -1.2605 -2.5814 46 1 11.3152 -2.9375 -2.7254 47 1 9.6343 -0.4340 -2.2420 48 1 9.6291 -1.4640 -3.6942 49 1 4.0343 -1.2643 1.0183 50 1 4.1064 -0.5386 -0.6166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108369110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -87.662589 kcal Electronic energy + Delta-G solvation = -30744.527769 eV Core-core repulsion = 26579.649743 eV Total energy + Delta-G solvation = -4164.878026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.68899 -39.63618 -38.85878 -37.27156 -34.99353 -34.35751 -32.63239 -31.69337 -31.27437 -30.20088 -29.18971 -27.97102 -26.48323 -25.64108 -24.13430 -23.25921 -22.44458 -21.14441 -20.09971 -19.67031 -18.71590 -17.74439 -17.38613 -17.04005 -16.18270 -15.90055 -15.84314 -15.36848 -15.14989 -15.01722 -14.47355 -14.25593 -14.09799 -13.79507 -13.78360 -13.53322 -13.29851 -13.11246 -13.03525 -12.90328 -12.77826 -12.47026 -12.33750 -11.97757 -11.92787 -11.61395 -11.56224 -11.21961 -11.20902 -11.03603 -10.84359 -10.69931 -10.33367 -10.27019 -10.25946 -10.02930 -9.81999 -9.55413 -9.07869 -9.05253 -8.89004 -8.55992 -6.76820 -5.86753 -3.30230 2.28934 2.47608 2.70080 3.24241 3.33373 3.40373 3.41439 3.95423 4.13401 4.23248 4.41807 4.45516 4.56840 4.77325 4.81931 4.88172 4.96990 5.02336 5.11514 5.16527 5.31604 5.36867 5.40748 5.45098 5.48165 5.50397 5.60400 5.66164 5.75305 5.89443 5.90613 5.91656 5.98506 6.06621 6.11769 6.28294 6.42799 6.53457 6.64528 6.73653 6.80521 7.04465 7.12463 7.43593 7.58361 7.69022 7.80647 7.84918 8.25013 8.30851 9.08632 9.71600 10.28548 11.21232 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.002483 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.663658 B =11272.188463 C =11414.477299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.526 3.474 3 O -0.545 6.545 4 N -0.620 5.620 5 C 0.099 3.901 6 C -0.112 4.112 7 C -0.125 4.125 8 H 0.111 0.889 9 C 0.521 3.479 10 O -0.539 6.539 11 N -0.713 5.713 12 C 0.139 3.861 13 C 0.078 3.922 14 C -0.162 4.162 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.385 6.385 28 C 0.117 3.883 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.403 0.597 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.097 0.903 43 H 0.029 0.971 44 H 0.256 0.744 45 H 0.061 0.939 46 H 0.026 0.974 47 H 0.048 0.952 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.819 2.183 -5.387 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.315 3.685 3 O -0.422 6.422 4 N -0.356 5.356 5 C -0.024 4.024 6 C -0.150 4.150 7 C -0.148 4.148 8 H 0.129 0.871 9 C 0.306 3.694 10 O -0.417 6.417 11 N -0.364 5.364 12 C 0.015 3.985 13 C 0.037 3.963 14 C -0.220 4.220 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.304 6.304 28 C -0.006 4.006 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.238 0.762 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.115 0.885 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.557 1.909 -4.840 23.149 hybrid contribution 0.853 0.848 0.440 1.281 sum -21.703 2.756 -4.400 22.316 Atomic orbital electron populations 1.21876 0.91216 1.04407 1.05358 1.20545 0.90428 0.81936 0.75550 1.90754 1.70699 1.30627 1.50102 1.48596 1.07140 1.06085 1.73757 1.22148 0.96639 0.81465 1.02131 1.22544 0.91739 0.96854 1.03864 1.22540 0.93675 0.96012 1.02533 0.87074 1.20056 0.85034 0.84054 0.80304 1.90716 1.87396 1.25311 1.38227 1.46021 1.05917 1.30769 1.53688 1.21390 0.79989 0.97685 0.99394 1.22551 0.97199 0.95095 0.81460 1.22212 1.00852 0.97148 1.01759 1.21291 0.82454 0.93417 0.99548 1.43997 1.23596 1.63976 0.99842 1.19171 1.09582 1.07634 1.01958 0.91379 1.25041 0.99003 0.95256 1.00224 1.70015 1.48718 1.12514 1.23330 0.86275 0.79944 0.79231 0.81244 1.21341 1.21668 1.20422 1.21597 0.94601 0.98561 0.86965 1.23037 0.90056 0.93671 0.96423 1.87802 1.55394 1.68054 1.19156 1.22127 0.81175 0.95575 1.01772 0.90415 0.88640 0.88628 0.90899 0.90765 0.89191 0.88804 0.76192 0.90746 0.89994 0.90789 0.91871 0.93922 0.88541 0.95259 0.93415 0.92036 0.95655 0.93349 0.90176 0.90646 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.21 36.01 0.37 -0.57 16 2 C 0.53 5.34 7.96 -10.99 -0.09 5.26 16 3 O -0.54 -8.07 17.36 5.56 0.10 -7.97 16 4 N -0.62 -5.52 3.33 -170.49 -0.57 -6.09 16 5 C 0.10 0.59 5.81 -3.07 -0.02 0.57 16 6 C -0.11 -0.85 6.06 -24.90 -0.15 -1.00 16 7 C -0.13 -1.15 3.43 -89.63 -0.31 -1.45 16 8 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 9 C 0.52 6.80 7.14 -10.99 -0.08 6.72 16 10 O -0.54 -8.97 15.74 5.56 0.09 -8.88 16 11 N -0.71 -9.56 5.14 -60.29 -0.31 -9.87 16 12 C 0.14 2.29 4.82 -4.04 -0.02 2.27 16 13 C 0.08 1.41 0.76 -90.47 -0.07 1.34 16 14 C -0.16 -2.75 7.92 37.16 0.29 -2.45 16 15 C 0.16 3.66 4.11 -3.54 -0.01 3.65 16 16 N -0.59 -14.22 2.57 -171.83 -0.44 -14.66 16 17 C -0.25 -6.71 9.65 -15.06 -0.15 -6.86 16 18 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.51 11.14 55.49 0.62 -24.90 16 21 Si 0.90 21.24 29.59 -169.99 -5.03 16.22 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.11 2.21 6.73 -3.53 -0.02 2.19 16 26 C 0.05 0.78 6.60 37.31 0.25 1.03 16 27 O -0.38 -6.88 9.98 -35.23 -0.35 -7.24 16 28 C 0.12 1.14 6.36 -2.50 -0.02 1.13 16 29 H 0.08 0.26 6.60 -51.93 -0.34 -0.08 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.30 8.02 -51.93 -0.42 -0.12 16 33 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.87 7.43 -51.93 -0.39 0.48 16 36 H 0.40 4.82 7.20 -40.82 -0.29 4.52 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.38 6.11 -51.93 -0.32 1.06 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.60 6.86 -51.93 -0.36 0.25 16 42 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.80 6.25 -51.93 -0.32 0.48 16 48 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 50 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 LS Contribution 393.01 15.07 5.92 5.92 Total: -1.00 -33.55 393.01 -8.28 -41.84 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.20 Total: 3.80 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -0.11 Total: 11.83 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.70 Total: -55.52 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.17 Total: -24.09 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.55 -8.28 -41.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108369110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.826 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds