Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 119.99915 * 2 1 4 4 N 1.34776 * 119.99478 * 179.97438 * 2 1 3 5 5 C 1.47018 * 125.65121 * 359.97438 * 4 2 1 6 6 C 1.54323 * 107.27042 * 178.97218 * 5 4 2 7 7 C 1.55156 * 102.94382 * 337.80903 * 6 5 4 8 8 H 1.09001 * 111.00125 * 277.38657 * 7 6 5 9 9 C 1.50697 * 111.00579 * 153.57836 * 7 6 5 10 10 O 1.21277 * 120.00300 * 3.17347 * 9 7 6 11 11 N 1.34777 * 119.99890 * 183.17692 * 9 7 6 12 12 C 1.46503 * 119.99965 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47093 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.51128 * 60.00242 * 13 12 11 15 15 C 1.53291 * 109.51163 * 180.10339 * 13 12 11 16 16 N 1.47146 * 108.38644 * 172.27723 * 15 13 12 17 17 C 1.36942 * 120.98636 * 129.48379 * 16 15 13 18 18 H 1.08000 * 120.00498 * 206.23133 * 17 16 15 19 19 C 1.38813 * 119.99405 * 26.22514 * 17 16 15 20 20 N 1.31622 * 120.00087 * 16.91601 * 19 17 16 21 21 Si 1.86805 * 119.99865 * 196.90572 * 19 17 16 22 22 H 1.48496 * 109.46786 * 90.00410 * 21 19 17 23 23 H 1.48493 * 109.47191 * 210.00247 * 21 19 17 24 24 H 1.48503 * 109.47162 * 330.00596 * 21 19 17 25 25 C 1.47152 * 118.03724 * 309.46944 * 16 15 13 26 26 C 1.53297 * 108.38680 * 50.52933 * 25 16 15 27 27 O 1.42958 * 109.55194 * 299.87718 * 13 12 11 28 28 C 1.47474 * 125.62532 * 179.97438 * 4 2 1 29 29 H 1.08997 * 109.47481 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47397 * 300.00832 * 1 2 3 31 31 H 1.09003 * 109.46860 * 60.00504 * 1 2 3 32 32 H 1.08994 * 109.88741 * 59.55737 * 5 4 2 33 33 H 1.09001 * 110.01178 * 298.45927 * 5 4 2 34 34 H 1.08999 * 110.72265 * 219.44401 * 6 5 4 35 35 H 1.09004 * 110.87060 * 96.23715 * 6 5 4 36 36 H 0.97003 * 120.00028 * 0.02562 * 11 9 7 37 37 H 1.08999 * 109.46935 * 60.00610 * 12 11 9 38 38 H 1.08997 * 109.47378 * 300.00069 * 12 11 9 39 39 H 1.09000 * 109.47326 * 180.10064 * 14 13 12 40 40 H 1.09002 * 109.47324 * 60.10005 * 14 13 12 41 41 H 1.09007 * 109.47151 * 300.10223 * 14 13 12 42 42 H 1.09001 * 109.68094 * 291.99967 * 15 13 12 43 43 H 1.09001 * 109.68731 * 52.51510 * 15 13 12 44 44 H 0.97002 * 119.99818 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.68715 * 170.25970 * 25 16 15 46 46 H 1.09002 * 109.67745 * 290.80697 * 25 16 15 47 47 H 1.08998 * 109.51172 * 67.62422 * 26 25 16 48 48 H 1.08993 * 109.51069 * 187.73071 * 26 25 16 49 49 H 1.08998 * 110.34760 * 85.25316 * 28 4 2 50 50 H 1.08998 * 110.40683 * 322.92160 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.5745 -2.5066 0.0017 6 6 2.7279 -3.5316 -0.0245 7 6 3.9080 -2.7120 -0.6100 8 1 3.8589 -2.6792 -1.6984 9 6 5.2315 -3.2653 -0.1484 10 8 5.2648 -4.2644 0.5382 11 7 6.3783 -2.6499 -0.4986 12 6 7.6649 -3.1875 -0.0494 13 6 8.7987 -2.3080 -0.5807 14 6 8.6299 -0.8822 -0.0522 15 6 10.1456 -2.8712 -0.1134 16 7 11.2198 -2.1235 -0.7858 17 6 12.2569 -1.5844 -0.0723 18 1 12.7844 -0.7226 -0.4537 19 6 12.6302 -2.1457 1.1411 20 7 12.2352 -3.3620 1.4529 21 14 13.6933 -1.1750 2.3316 22 1 12.8240 -0.3907 3.2449 23 1 14.5286 -2.1113 3.1258 24 1 14.5723 -0.2514 1.5702 25 6 11.1469 -1.9723 -2.2477 26 6 9.7511 -1.4529 -2.6111 27 8 8.7643 -2.2947 -2.0098 28 6 3.6484 -1.3119 0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.9482 -2.6308 -0.8817 33 1 0.9764 -2.6446 0.9024 34 1 2.4824 -4.3719 -0.6739 35 1 2.9616 -3.8791 0.9819 36 1 6.3517 -1.8505 -1.0475 37 1 7.7857 -4.2032 -0.4260 38 1 7.6939 -3.1981 1.0401 39 1 9.4368 -0.2558 -0.4325 40 1 8.6606 -0.8925 1.0374 41 1 7.6719 -0.4823 -0.3849 42 1 10.2375 -2.7545 0.9665 43 1 10.2129 -3.9271 -0.3755 44 1 12.4964 -3.7543 2.3007 45 1 11.9019 -1.2605 -2.5814 46 1 11.3152 -2.9375 -2.7254 47 1 9.6343 -0.4340 -2.2420 48 1 9.6291 -1.4640 -3.6942 49 1 4.0343 -1.2643 1.0183 50 1 4.1064 -0.5386 -0.6166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108369110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -111.878135 kcal Electronic energy + Delta-G solvation = -30745.577834 eV Core-core repulsion = 26579.649743 eV Total energy + Delta-G solvation = -4165.928091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59119 -40.82770 -40.13084 -38.12332 -36.55394 -35.93798 -33.59221 -33.22769 -32.87270 -30.76599 -29.90507 -29.56809 -28.05032 -27.19401 -25.04389 -24.88710 -23.42579 -22.60558 -21.14709 -20.38192 -20.21762 -18.97112 -18.63341 -18.07803 -17.46755 -17.08240 -16.85602 -16.80660 -16.40115 -16.08623 -15.94826 -15.60326 -15.39112 -15.20510 -15.02100 -14.68849 -14.49844 -14.33806 -14.11366 -13.81575 -13.66815 -13.41957 -13.31180 -13.18963 -12.95953 -12.94662 -12.81024 -12.57695 -12.52640 -12.46747 -12.32599 -12.13910 -11.97334 -11.85464 -11.83825 -11.21997 -11.08612 -10.89432 -10.74013 -10.51357 -10.13713 -9.75287 -8.73068 -7.91007 -5.37642 1.44698 1.46465 1.49388 1.54707 1.58165 1.89188 2.20549 2.47158 2.77635 3.23417 3.27390 3.45231 3.50033 3.76888 3.87782 3.93344 4.00023 4.09200 4.17405 4.21236 4.27638 4.41293 4.45436 4.50178 4.55413 4.57363 4.62898 4.65113 4.69804 4.75233 4.78545 4.82427 4.95027 4.99437 5.03742 5.08769 5.10998 5.13874 5.19910 5.25621 5.33867 5.36744 5.52438 5.60572 6.28062 6.35436 6.46709 6.50276 7.05995 7.08972 7.17738 7.75194 8.28847 9.14578 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.002483 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.663658 B =11272.188463 C =11414.477299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.517 3.483 3 O -0.602 6.602 4 N -0.619 5.619 5 C 0.101 3.899 6 C -0.111 4.111 7 C -0.112 4.112 8 H 0.136 0.864 9 C 0.521 3.479 10 O -0.577 6.577 11 N -0.705 5.705 12 C 0.149 3.851 13 C 0.094 3.906 14 C -0.154 4.154 15 C 0.167 3.833 16 N -0.607 5.607 17 C -0.258 4.258 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.267 1.267 25 C 0.102 3.898 26 C 0.053 3.947 27 O -0.383 6.383 28 C 0.115 3.885 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.413 0.587 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.066 0.934 43 H -0.006 1.006 44 H 0.250 0.750 45 H 0.071 0.929 46 H 0.014 0.986 47 H 0.059 0.941 48 H 0.119 0.881 49 H 0.058 0.942 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.488 3.310 -6.921 26.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.309 3.691 3 O -0.484 6.484 4 N -0.354 5.354 5 C -0.021 4.021 6 C -0.149 4.149 7 C -0.134 4.134 8 H 0.154 0.846 9 C 0.308 3.692 10 O -0.456 6.456 11 N -0.357 5.357 12 C 0.024 3.976 13 C 0.053 3.947 14 C -0.211 4.211 15 C 0.040 3.960 16 N -0.331 5.331 17 C -0.388 4.388 18 H 0.091 0.909 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.794 3.206 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.192 1.192 25 C -0.023 4.023 26 C -0.025 4.025 27 O -0.303 6.303 28 C -0.009 4.009 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.250 0.750 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.012 0.988 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.032 0.968 47 H 0.077 0.923 48 H 0.136 0.864 49 H 0.077 0.923 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.258 3.037 -6.418 26.237 hybrid contribution 1.727 0.435 0.862 1.979 sum -23.531 3.472 -5.556 24.426 Atomic orbital electron populations 1.21911 0.87418 1.06545 1.06100 1.21425 0.92198 0.81212 0.74273 1.90724 1.72128 1.32654 1.52874 1.48719 1.06696 1.07165 1.72777 1.22354 0.96114 0.79004 1.04609 1.22573 0.91573 0.97739 1.02983 1.22491 0.91546 0.95592 1.03784 0.84616 1.20741 0.85987 0.83289 0.79201 1.90705 1.87998 1.27124 1.39822 1.45887 1.04944 1.31065 1.53802 1.21030 0.81243 0.96646 0.98638 1.22178 0.94832 0.95824 0.81850 1.22114 1.02074 0.95786 1.01121 1.21063 0.85175 0.91859 0.97892 1.44251 1.23528 1.63766 1.01603 1.19504 1.09664 1.07456 1.02202 0.90947 1.25776 1.00788 0.96044 1.01885 1.70179 1.50462 1.14094 1.23436 0.85293 0.78399 0.77834 0.79109 1.21159 1.22413 1.19172 1.21817 0.97480 0.98444 0.84602 1.23104 0.87320 0.93549 0.98506 1.87814 1.55431 1.68523 1.18505 1.22022 0.82346 0.95714 1.00790 0.87566 0.88044 0.87619 0.87735 0.88936 0.87415 0.90830 0.74986 0.92399 0.91055 0.92084 0.92772 0.90648 0.91556 0.98773 0.94049 0.91058 0.96839 0.92319 0.86362 0.92332 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.21 71.24 0.73 -0.55 16 2 C 0.52 9.58 7.96 87.66 0.70 10.28 16 3 O -0.60 -17.66 17.36 -3.02 -0.05 -17.71 16 4 N -0.62 -9.60 3.33 -811.70 -2.70 -12.30 16 5 C 0.10 0.82 5.81 86.73 0.50 1.32 16 6 C -0.11 -1.40 6.06 31.78 0.19 -1.21 16 7 C -0.11 -1.82 3.43 -10.15 -0.03 -1.86 16 8 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 9 C 0.52 13.23 7.14 87.66 0.63 13.85 16 10 O -0.58 -19.32 15.74 -3.02 -0.05 -19.37 16 11 N -0.71 -18.38 5.14 -463.06 -2.38 -20.77 16 12 C 0.15 5.03 4.82 86.38 0.42 5.45 16 13 C 0.09 3.43 0.76 -10.69 -0.01 3.43 16 14 C -0.15 -5.08 7.92 71.98 0.57 -4.51 16 15 C 0.17 7.99 4.11 86.35 0.36 8.35 16 16 N -0.61 -29.79 2.57 -697.56 -1.79 -31.58 16 17 C -0.26 -13.83 9.65 84.03 0.81 -13.02 16 18 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 19 C -0.05 -2.73 4.95 84.86 0.42 -2.31 16 20 N -0.94 -55.17 11.14 21.65 0.24 -54.92 16 21 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 C 0.10 4.08 6.73 86.35 0.58 4.66 16 26 C 0.05 1.66 6.60 72.08 0.48 2.13 16 27 O -0.38 -13.17 9.98 -148.98 -1.49 -14.66 16 28 C 0.12 2.11 6.36 86.84 0.55 2.66 16 29 H 0.11 0.22 6.60 -2.39 -0.02 0.20 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.29 8.02 -2.39 -0.02 0.27 16 33 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 34 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.27 7.43 -2.38 -0.02 1.25 16 36 H 0.41 9.09 7.20 -92.71 -0.67 8.43 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.06 2.20 6.11 -2.39 -0.01 2.19 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 41 H 0.07 1.99 6.86 -2.38 -0.02 1.97 16 42 H 0.07 3.57 6.14 -2.39 -0.01 3.55 16 43 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 45 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 46 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 1.78 6.25 -2.39 -0.01 1.76 16 48 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 49 H 0.06 1.27 8.03 -2.39 -0.02 1.25 16 50 H 0.08 1.58 8.04 -2.39 -0.02 1.56 16 Total: -1.00 -77.03 393.01 0.97 -76.06 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.28 Total: 20.08 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 6.89 Total: 28.69 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -6.63 Total: -119.57 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -1.59 Total: -51.74 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -77.03 0.97 -76.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108369110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.818 kcal (2) G-P(sol) polarization free energy of solvation -77.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds