Wall clock time and date at job start Sat Apr 11 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42900 * 109.47665 * 2 1 4 4 C 1.42894 * 114.00493 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47608 * 29.99668 * 4 3 2 6 6 C 1.53007 * 109.46776 * 269.99720 * 4 3 2 7 7 C 1.50702 * 109.47224 * 150.00113 * 4 3 2 8 8 O 1.21275 * 120.00030 * 4.99879 * 7 4 3 9 9 N 1.34778 * 119.99659 * 184.99941 * 7 4 3 10 10 C 1.46498 * 119.99590 * 180.02562 * 9 7 4 11 11 H 1.08995 * 110.55229 * 32.13012 * 10 9 7 12 12 C 1.54839 * 110.61525 * 269.09544 * 10 9 7 13 13 C 1.55844 * 103.52021 * 241.49688 * 12 10 9 14 14 H 1.09004 * 116.15039 * 159.22777 * 13 12 10 15 15 C 1.55844 * 105.02984 * 288.26629 * 13 12 10 16 16 C 1.54834 * 103.52072 * 71.73084 * 15 13 12 17 17 C 1.55849 * 103.51619 * 0.02562 * 16 15 13 18 18 H 1.09005 * 115.58010 * 158.88984 * 17 16 15 19 19 N 1.50646 * 101.02902 * 32.99133 * 17 16 15 20 20 C 1.46900 * 111.00113 * 62.35018 * 19 17 16 21 21 C 1.50698 * 109.47020 * 67.88677 * 20 19 17 22 22 O 1.21296 * 120.00508 * 5.81380 * 21 20 19 23 23 N 1.34778 * 120.00305 * 185.81036 * 21 20 19 24 24 C 1.37097 * 120.00372 * 180.02562 * 23 21 20 25 25 H 1.07992 * 119.99987 * 0.27751 * 24 23 21 26 26 C 1.38958 * 119.99948 * 179.97438 * 24 23 21 27 27 N 1.31410 * 119.99745 * 180.02562 * 26 24 23 28 28 Si 1.86800 * 119.99909 * 0.02562 * 26 24 23 29 29 H 1.48501 * 109.47085 * 90.00223 * 28 26 24 30 30 H 1.48502 * 109.47084 * 209.99552 * 28 26 24 31 31 H 1.48499 * 109.47451 * 330.00024 * 28 26 24 32 32 H 1.09005 * 109.47205 * 300.00188 * 1 2 3 33 33 H 1.09001 * 109.47669 * 59.99702 * 1 2 3 34 34 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.47205 * 239.99812 * 2 1 3 36 36 H 1.09001 * 109.47669 * 120.00298 * 2 1 3 37 37 H 1.09005 * 109.46966 * 179.97438 * 6 4 3 38 38 H 1.08993 * 109.47207 * 299.99798 * 6 4 3 39 39 H 1.09002 * 109.46935 * 60.00586 * 6 4 3 40 40 H 0.96998 * 120.00599 * 359.97438 * 9 7 4 41 41 H 1.08997 * 110.61244 * 122.97939 * 12 10 9 42 42 H 1.09004 * 110.60648 * 0.02562 * 12 10 9 43 43 H 1.09009 * 110.61359 * 190.24003 * 15 13 12 44 44 H 1.08994 * 110.61669 * 313.22008 * 15 13 12 45 45 H 1.09005 * 110.61135 * 118.50402 * 16 15 13 46 46 H 1.08997 * 110.61481 * 241.33314 * 16 15 13 47 47 H 1.08996 * 109.47000 * 307.88989 * 20 19 17 48 48 H 1.08997 * 109.47558 * 187.88888 * 20 19 17 49 49 H 0.97004 * 119.99432 * 359.97438 * 23 21 20 50 50 H 0.97001 * 119.99455 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 1 3.8631 0.6017 -0.5146 6 6 3.9398 1.5002 1.4418 7 6 3.8342 2.7265 -0.7110 8 8 2.9856 3.5049 -1.0914 9 7 5.1380 2.9939 -0.9234 10 6 5.5301 4.2252 -1.6134 11 1 4.8251 5.0273 -1.3951 12 6 5.6327 3.9858 -3.1398 13 6 7.1280 4.2900 -3.4565 14 1 7.5202 3.8625 -4.3794 15 6 7.2634 5.8365 -3.3205 16 6 7.1608 6.0761 -1.7943 17 6 6.9778 4.6421 -1.2120 18 1 7.2373 4.5248 -0.1598 19 7 7.7924 3.8299 -2.1847 20 6 9.2049 4.2320 -2.1529 21 6 9.8083 3.8426 -0.8280 22 8 9.1610 3.1926 -0.0343 23 7 11.0672 4.2165 -0.5248 24 6 11.6163 3.8618 0.6803 25 1 11.0417 3.2790 1.3848 26 6 12.9144 4.2469 0.9925 27 7 13.4408 3.9065 2.1474 28 14 13.9110 5.2484 -0.2294 29 1 13.6873 6.6956 0.0175 30 1 15.3535 4.9357 -0.0659 31 1 13.4846 4.9103 -1.6111 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 5.0265 1.5858 1.4414 38 1 3.5076 2.3586 1.9558 39 1 3.6481 0.5841 1.9556 40 1 5.8167 2.3715 -0.6188 41 1 4.9789 4.6702 -3.6804 42 1 5.3914 2.9510 -3.3828 43 1 8.2298 6.1718 -3.6975 44 1 6.4507 6.3404 -3.8436 45 1 8.0763 6.5300 -1.4147 46 1 6.2988 6.7010 -1.5610 47 1 9.2783 5.3118 -2.2822 48 1 9.7433 3.7323 -2.9582 49 1 11.5849 4.7360 -1.1597 50 1 14.3469 4.1756 2.3655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110318492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:13 Heat of formation + Delta-G solvation = -86.403222 kcal Electronic energy + Delta-G solvation = -30647.470266 eV Core-core repulsion = 26482.646850 eV Total energy + Delta-G solvation = -4164.823416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16396 -39.70299 -38.12203 -37.68136 -34.47191 -34.00140 -32.68228 -31.75997 -31.28393 -30.38173 -29.80239 -28.76953 -26.67492 -24.71281 -23.98504 -22.99100 -22.00004 -20.47962 -20.16816 -19.71651 -19.26904 -18.18476 -17.40004 -17.19043 -16.37740 -16.31687 -15.83386 -15.62977 -15.26705 -14.93512 -14.63796 -14.56559 -13.89819 -13.85791 -13.42927 -13.35794 -13.23398 -12.90440 -12.76313 -12.49020 -12.41054 -12.34280 -12.16114 -12.13210 -12.05157 -11.64110 -11.59120 -11.53296 -11.30835 -11.25052 -11.23169 -11.02369 -10.78826 -10.63241 -10.38927 -10.04848 -10.01682 -9.59370 -9.45831 -9.01828 -8.64781 -8.29161 -8.20931 -6.35161 -3.86510 2.63522 2.81630 2.98942 3.03004 3.11860 3.70376 3.72830 3.88686 4.06402 4.39181 4.50007 4.60965 4.72610 4.75757 4.78986 4.90537 4.91724 5.00418 5.06733 5.10252 5.15589 5.19684 5.23508 5.30830 5.32189 5.42743 5.45070 5.53924 5.56397 5.61655 5.65733 5.74739 5.77978 5.87451 5.88347 5.90078 5.95944 5.98126 6.04760 6.13613 6.29961 6.54306 6.73361 6.91841 7.02947 7.54134 7.62439 8.10030 8.28353 8.55869 8.91009 9.38518 9.78859 10.77884 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.002682 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.075547 B =10438.463669 C =11852.142566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.072 3.928 5 H 0.086 0.914 6 C -0.172 4.172 7 C 0.515 3.485 8 O -0.530 6.530 9 N -0.709 5.709 10 C 0.153 3.847 11 H 0.094 0.906 12 C -0.121 4.121 13 C 0.041 3.959 14 H 0.114 0.886 15 C -0.155 4.155 16 C -0.156 4.156 17 C 0.049 3.951 18 H 0.132 0.868 19 N -0.467 5.467 20 C 0.020 3.980 21 C 0.454 3.546 22 O -0.563 6.563 23 N -0.591 5.591 24 C -0.304 4.304 25 H 0.120 0.880 26 C 0.041 3.959 27 N -0.881 5.881 28 Si 0.879 3.121 29 H -0.271 1.271 30 H -0.276 1.276 31 H -0.270 1.270 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.411 0.589 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.090 0.910 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.145 -1.985 -10.243 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.278 6.278 4 C 0.010 3.990 5 H 0.103 0.897 6 C -0.229 4.229 7 C 0.300 3.700 8 O -0.406 6.406 9 N -0.361 5.361 10 C 0.048 3.952 11 H 0.112 0.888 12 C -0.160 4.160 13 C -0.068 4.068 14 H 0.132 0.868 15 C -0.194 4.194 16 C -0.195 4.195 17 C -0.060 4.060 18 H 0.150 0.850 19 N -0.189 5.189 20 C -0.112 4.112 21 C 0.240 3.760 22 O -0.445 6.445 23 N -0.230 5.230 24 C -0.433 4.433 25 H 0.137 0.863 26 C -0.162 4.162 27 N -0.521 5.521 28 Si 0.705 3.295 29 H -0.197 1.197 30 H -0.202 1.202 31 H -0.195 1.195 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.247 0.753 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.108 0.892 49 H 0.202 0.798 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.121 -2.365 -9.708 20.693 hybrid contribution 1.788 1.174 -0.893 2.318 sum -16.333 -1.191 -10.602 19.508 Atomic orbital electron populations 1.21722 0.93533 1.02123 1.03355 1.22581 0.95853 0.83699 1.00132 1.88040 1.18595 1.26160 1.94976 1.21883 0.83468 0.96637 0.96997 0.89665 1.22245 1.02371 1.03592 0.94733 1.20358 0.82780 0.87597 0.79290 1.90687 1.50298 1.48854 1.50735 1.45914 1.06883 1.24110 1.59230 1.22060 0.95034 0.86719 0.91404 0.88805 1.23031 0.94884 1.02416 0.95639 1.24542 0.94801 0.92761 0.94653 0.86765 1.23316 1.02176 0.97497 0.96392 1.23260 1.02780 0.98226 0.95228 1.24793 0.91611 0.90205 0.99365 0.85025 1.67488 1.00519 1.48606 1.02315 1.22177 0.90795 0.99857 0.98393 1.19608 0.82796 0.85087 0.88537 1.90523 1.61113 1.41999 1.50874 1.42229 1.12981 1.50058 1.17777 1.19405 0.98032 1.32863 0.92962 0.86282 1.25041 0.96676 0.97904 0.96554 1.69619 1.15895 1.45368 1.21192 0.86689 0.80860 0.80960 0.80982 1.19667 1.20170 1.19516 0.91766 0.91740 0.91093 0.93294 0.93156 0.90256 0.91124 0.91330 0.75286 0.90770 0.90682 0.91350 0.90941 0.90756 0.90771 0.92262 0.89180 0.79779 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.15 0.38 -0.78 16 2 C 0.05 0.48 6.47 37.15 0.24 0.72 16 3 O -0.36 -4.56 9.52 -55.09 -0.52 -5.09 16 4 C 0.07 0.82 3.13 -27.88 -0.09 0.73 16 5 H 0.09 0.79 7.79 -51.93 -0.40 0.38 16 6 C -0.17 -1.74 9.48 37.16 0.35 -1.39 16 7 C 0.51 7.19 7.18 -10.98 -0.08 7.12 16 8 O -0.53 -9.35 16.15 -14.30 -0.23 -9.58 16 9 N -0.71 -9.14 5.03 -51.37 -0.26 -9.40 16 10 C 0.15 1.98 2.80 -65.41 -0.18 1.80 16 11 H 0.09 1.28 7.23 -51.93 -0.38 0.91 16 12 C -0.12 -1.38 6.22 -24.24 -0.15 -1.53 16 13 C 0.04 0.46 4.96 -62.55 -0.31 0.15 16 14 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.15 -1.60 5.63 -24.25 -0.14 -1.73 16 16 C -0.16 -1.87 5.62 -24.24 -0.14 -2.01 16 17 C 0.05 0.69 3.83 -62.53 -0.24 0.45 16 18 H 0.13 2.25 6.98 -51.93 -0.36 1.89 16 19 N -0.47 -6.73 5.30 -206.95 -1.10 -7.83 16 20 C 0.02 0.31 5.15 -4.98 -0.03 0.28 16 21 C 0.45 9.67 7.47 -10.99 -0.08 9.59 16 22 O -0.56 -13.86 14.56 5.54 0.08 -13.78 16 23 N -0.59 -13.49 5.09 -10.96 -0.06 -13.54 16 24 C -0.30 -8.31 10.16 -14.93 -0.15 -8.46 16 25 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 26 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 27 N -0.88 -25.23 13.96 55.50 0.77 -24.46 16 28 Si 0.88 18.95 27.74 -169.99 -4.71 14.24 16 29 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 30 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 31 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 37 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 40 H 0.41 5.21 8.44 -40.82 -0.34 4.87 16 41 H 0.07 0.78 7.82 -51.93 -0.41 0.38 16 42 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 43 H 0.07 0.67 7.32 -51.92 -0.38 0.29 16 44 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 45 H 0.07 0.96 7.23 -51.93 -0.38 0.58 16 46 H 0.07 0.81 7.83 -51.93 -0.41 0.41 16 47 H 0.06 0.83 4.86 -51.93 -0.25 0.58 16 48 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 50 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -33.46 395.32 -8.88 -42.34 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -8.10 Total: 15.20 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.70 Total: 5.95 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.64 Total: -55.23 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.68 Total: -28.46 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.46 -8.88 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110318492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.068 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds