Wall clock time and date at job start Sat Apr 11 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42900 * 109.47665 * 2 1 4 4 C 1.42894 * 114.00493 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47608 * 29.99668 * 4 3 2 6 6 C 1.53007 * 109.46776 * 269.99720 * 4 3 2 7 7 C 1.50702 * 109.47224 * 150.00113 * 4 3 2 8 8 O 1.21275 * 120.00030 * 4.99879 * 7 4 3 9 9 N 1.34778 * 119.99659 * 184.99941 * 7 4 3 10 10 C 1.46498 * 119.99590 * 180.02562 * 9 7 4 11 11 H 1.08995 * 110.55229 * 32.13012 * 10 9 7 12 12 C 1.54839 * 110.61525 * 269.09544 * 10 9 7 13 13 C 1.55844 * 103.52021 * 241.49688 * 12 10 9 14 14 H 1.09004 * 116.15039 * 159.22777 * 13 12 10 15 15 C 1.55844 * 105.02984 * 288.26629 * 13 12 10 16 16 C 1.54834 * 103.52072 * 71.73084 * 15 13 12 17 17 C 1.55849 * 103.51619 * 0.02562 * 16 15 13 18 18 H 1.09005 * 115.58010 * 158.88984 * 17 16 15 19 19 N 1.50646 * 101.02902 * 32.99133 * 17 16 15 20 20 C 1.46900 * 111.00113 * 62.35018 * 19 17 16 21 21 C 1.50698 * 109.47020 * 67.88677 * 20 19 17 22 22 O 1.21296 * 120.00508 * 5.81380 * 21 20 19 23 23 N 1.34778 * 120.00305 * 185.81036 * 21 20 19 24 24 C 1.37097 * 120.00372 * 180.02562 * 23 21 20 25 25 H 1.07992 * 119.99987 * 0.27751 * 24 23 21 26 26 C 1.38958 * 119.99948 * 179.97438 * 24 23 21 27 27 N 1.31410 * 119.99745 * 180.02562 * 26 24 23 28 28 Si 1.86800 * 119.99909 * 0.02562 * 26 24 23 29 29 H 1.48501 * 109.47085 * 90.00223 * 28 26 24 30 30 H 1.48502 * 109.47084 * 209.99552 * 28 26 24 31 31 H 1.48499 * 109.47451 * 330.00024 * 28 26 24 32 32 H 1.09005 * 109.47205 * 300.00188 * 1 2 3 33 33 H 1.09001 * 109.47669 * 59.99702 * 1 2 3 34 34 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.47205 * 239.99812 * 2 1 3 36 36 H 1.09001 * 109.47669 * 120.00298 * 2 1 3 37 37 H 1.09005 * 109.46966 * 179.97438 * 6 4 3 38 38 H 1.08993 * 109.47207 * 299.99798 * 6 4 3 39 39 H 1.09002 * 109.46935 * 60.00586 * 6 4 3 40 40 H 0.96998 * 120.00599 * 359.97438 * 9 7 4 41 41 H 1.08997 * 110.61244 * 122.97939 * 12 10 9 42 42 H 1.09004 * 110.60648 * 0.02562 * 12 10 9 43 43 H 1.09009 * 110.61359 * 190.24003 * 15 13 12 44 44 H 1.08994 * 110.61669 * 313.22008 * 15 13 12 45 45 H 1.09005 * 110.61135 * 118.50402 * 16 15 13 46 46 H 1.08997 * 110.61481 * 241.33314 * 16 15 13 47 47 H 1.08996 * 109.47000 * 307.88989 * 20 19 17 48 48 H 1.08997 * 109.47558 * 187.88888 * 20 19 17 49 49 H 0.97004 * 119.99432 * 359.97438 * 23 21 20 50 50 H 0.97001 * 119.99455 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 1 3.8631 0.6017 -0.5146 6 6 3.9398 1.5002 1.4418 7 6 3.8342 2.7265 -0.7110 8 8 2.9856 3.5049 -1.0914 9 7 5.1380 2.9939 -0.9234 10 6 5.5301 4.2252 -1.6134 11 1 4.8251 5.0273 -1.3951 12 6 5.6327 3.9858 -3.1398 13 6 7.1280 4.2900 -3.4565 14 1 7.5202 3.8625 -4.3794 15 6 7.2634 5.8365 -3.3205 16 6 7.1608 6.0761 -1.7943 17 6 6.9778 4.6421 -1.2120 18 1 7.2373 4.5248 -0.1598 19 7 7.7924 3.8299 -2.1847 20 6 9.2049 4.2320 -2.1529 21 6 9.8083 3.8426 -0.8280 22 8 9.1610 3.1926 -0.0343 23 7 11.0672 4.2165 -0.5248 24 6 11.6163 3.8618 0.6803 25 1 11.0417 3.2790 1.3848 26 6 12.9144 4.2469 0.9925 27 7 13.4408 3.9065 2.1474 28 14 13.9110 5.2484 -0.2294 29 1 13.6873 6.6956 0.0175 30 1 15.3535 4.9357 -0.0659 31 1 13.4846 4.9103 -1.6111 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 5.0265 1.5858 1.4414 38 1 3.5076 2.3586 1.9558 39 1 3.6481 0.5841 1.9556 40 1 5.8167 2.3715 -0.6188 41 1 4.9789 4.6702 -3.6804 42 1 5.3914 2.9510 -3.3828 43 1 8.2298 6.1718 -3.6975 44 1 6.4507 6.3404 -3.8436 45 1 8.0763 6.5300 -1.4147 46 1 6.2988 6.7010 -1.5610 47 1 9.2783 5.3118 -2.2822 48 1 9.7433 3.7323 -2.9582 49 1 11.5849 4.7360 -1.1597 50 1 14.3469 4.1756 2.3655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110318492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:12 Heat of formation + Delta-G solvation = -112.433598 kcal Electronic energy + Delta-G solvation = -30648.599027 eV Core-core repulsion = 26482.646850 eV Total energy + Delta-G solvation = -4165.952178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23127 -40.79179 -39.78121 -38.67802 -35.98312 -35.56199 -33.75135 -33.50855 -32.44566 -31.20740 -30.74117 -29.74663 -28.19113 -25.88157 -25.44676 -23.70601 -22.91955 -21.77134 -21.26149 -21.02725 -20.63950 -19.94550 -18.41587 -18.13824 -17.73270 -17.29138 -17.04779 -16.78176 -16.60539 -16.34948 -15.76700 -15.61252 -15.37662 -15.04875 -14.85141 -14.46904 -14.29139 -14.20279 -14.10201 -13.69941 -13.46446 -13.28756 -13.24975 -13.13651 -13.02764 -12.91135 -12.71754 -12.54887 -12.40086 -12.31410 -12.23003 -12.11428 -12.03989 -11.97686 -11.75203 -11.46077 -11.33569 -10.94776 -10.46178 -10.35134 -10.21309 -10.08642 -9.46665 -8.39323 -5.99040 1.30361 1.35450 1.44206 1.53443 1.86550 2.00315 2.23702 2.63643 2.91821 3.15142 3.17719 3.40271 3.65708 3.72011 3.87500 3.90478 3.97674 4.08902 4.17238 4.18882 4.23913 4.29902 4.32613 4.37294 4.41076 4.47644 4.48797 4.53826 4.56474 4.70673 4.73948 4.79747 4.87543 4.98589 5.00948 5.06176 5.10487 5.14505 5.21119 5.26165 5.29326 5.48136 5.54981 5.69022 5.90490 6.03291 6.10836 6.54843 6.62257 6.91642 7.18737 7.43581 8.00421 8.78176 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.002682 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.075547 B =10438.463669 C =11852.142566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.388 6.388 4 C 0.074 3.926 5 H 0.110 0.890 6 C -0.166 4.166 7 C 0.512 3.488 8 O -0.571 6.571 9 N -0.703 5.703 10 C 0.153 3.847 11 H 0.084 0.916 12 C -0.114 4.114 13 C 0.051 3.949 14 H 0.140 0.860 15 C -0.147 4.147 16 C -0.154 4.154 17 C 0.044 3.956 18 H 0.091 0.909 19 N -0.486 5.486 20 C 0.033 3.967 21 C 0.455 3.545 22 O -0.602 6.602 23 N -0.595 5.595 24 C -0.321 4.321 25 H 0.057 0.943 26 C -0.017 4.017 27 N -0.936 5.936 28 Si 0.961 3.039 29 H -0.259 1.259 30 H -0.277 1.277 31 H -0.231 1.231 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.412 0.588 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.118 0.882 49 H 0.387 0.613 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.884 -1.268 -13.952 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.307 6.307 4 C 0.013 3.987 5 H 0.128 0.872 6 C -0.224 4.224 7 C 0.299 3.701 8 O -0.450 6.450 9 N -0.355 5.355 10 C 0.048 3.952 11 H 0.102 0.898 12 C -0.153 4.153 13 C -0.057 4.057 14 H 0.158 0.842 15 C -0.185 4.185 16 C -0.194 4.194 17 C -0.066 4.066 18 H 0.109 0.891 19 N -0.210 5.210 20 C -0.099 4.099 21 C 0.242 3.758 22 O -0.486 6.486 23 N -0.237 5.237 24 C -0.450 4.450 25 H 0.075 0.925 26 C -0.215 4.215 27 N -0.577 5.577 28 Si 0.781 3.219 29 H -0.184 1.184 30 H -0.203 1.203 31 H -0.154 1.154 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.248 0.752 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.136 0.864 49 H 0.223 0.777 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.871 -1.658 -13.442 22.424 hybrid contribution 1.560 0.851 0.379 1.817 sum -16.311 -0.807 -13.064 20.913 Atomic orbital electron populations 1.21757 0.92846 1.03501 1.02504 1.22849 0.96511 0.82317 1.01419 1.88014 1.19027 1.28557 1.95147 1.21922 0.83493 0.95948 0.97364 0.87243 1.22206 1.02052 1.03975 0.94156 1.20874 0.82467 0.88083 0.78697 1.90656 1.51276 1.50423 1.52678 1.45945 1.06721 1.24058 1.58768 1.22063 0.93914 0.86425 0.92839 0.89845 1.23001 0.95740 1.02585 0.93977 1.24678 0.93711 0.93510 0.93807 0.84242 1.23302 1.03854 0.96759 0.94590 1.23251 1.02692 0.96607 0.96823 1.24574 0.92312 0.92113 0.97569 0.89062 1.67471 0.99978 1.49400 1.04113 1.22100 0.91407 1.01596 0.94783 1.20820 0.81853 0.82979 0.90111 1.90514 1.61966 1.43267 1.52856 1.42065 1.13833 1.51051 1.16738 1.18971 0.98424 1.33424 0.94230 0.92463 1.26077 0.97558 0.98964 0.98933 1.69804 1.16647 1.47234 1.23985 0.85414 0.78044 0.78914 0.79480 1.18377 1.20275 1.15393 0.92384 0.92815 0.88577 0.92192 0.91575 0.90426 0.92633 0.89272 0.75208 0.89315 0.91102 0.89832 0.89012 0.91681 0.90003 0.89698 0.86417 0.77739 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.04 0.75 6.47 71.98 0.47 1.22 16 3 O -0.39 -9.81 9.52 -129.99 -1.24 -11.05 16 4 C 0.07 1.67 3.13 29.85 0.09 1.76 16 5 H 0.11 1.90 7.79 -2.39 -0.02 1.88 16 6 C -0.17 -3.40 9.48 71.98 0.68 -2.71 16 7 C 0.51 14.60 7.18 87.66 0.63 15.23 16 8 O -0.57 -20.68 16.15 15.97 0.26 -20.42 16 9 N -0.70 -18.49 5.03 -434.83 -2.19 -20.68 16 10 C 0.15 3.91 2.80 46.63 0.13 4.04 16 11 H 0.08 2.31 7.23 -2.39 -0.02 2.29 16 12 C -0.11 -2.35 6.22 32.21 0.20 -2.15 16 13 C 0.05 0.94 4.96 46.14 0.23 1.17 16 14 H 0.14 1.99 8.14 -2.38 -0.02 1.98 16 15 C -0.15 -2.41 5.63 32.20 0.18 -2.22 16 16 C -0.15 -3.43 5.62 32.21 0.18 -3.25 16 17 C 0.04 1.22 3.83 46.17 0.18 1.40 16 18 H 0.09 3.32 6.98 -2.38 -0.02 3.30 16 19 N -0.49 -13.09 5.30 -808.66 -4.28 -17.38 16 20 C 0.03 0.93 5.15 85.56 0.44 1.37 16 21 C 0.45 19.30 7.47 87.66 0.66 19.95 16 22 O -0.60 -30.90 14.56 -3.08 -0.04 -30.95 16 23 N -0.59 -26.92 5.09 -306.98 -1.56 -28.48 16 24 C -0.32 -18.26 10.16 84.04 0.85 -17.40 16 25 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 26 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 27 N -0.94 -55.70 13.96 21.67 0.30 -55.40 16 28 Si 0.96 38.06 27.74 68.60 1.90 39.96 16 29 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 30 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 31 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.86 8.08 -2.38 -0.02 0.84 16 36 H 0.07 0.89 7.87 -2.39 -0.02 0.87 16 37 H 0.08 1.59 7.92 -2.38 -0.02 1.57 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.44 7.87 -2.39 -0.02 1.42 16 40 H 0.41 10.77 8.44 -92.71 -0.78 9.99 16 41 H 0.09 1.61 7.82 -2.39 -0.02 1.59 16 42 H 0.07 1.54 7.98 -2.38 -0.02 1.52 16 43 H 0.08 1.19 7.32 -2.38 -0.02 1.17 16 44 H 0.09 1.23 7.82 -2.39 -0.02 1.21 16 45 H 0.06 1.56 7.23 -2.38 -0.02 1.54 16 46 H 0.08 1.67 7.83 -2.39 -0.02 1.66 16 47 H 0.09 2.03 4.86 -2.39 -0.01 2.02 16 48 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.39 14.59 5.76 -92.71 -0.53 14.05 16 50 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -79.26 395.32 -1.14 -80.40 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -0.41 Total: 47.46 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 6.13 Total: 16.52 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -7.73 Total: -121.93 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -1.02 Total: -62.41 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.90 Total: 39.96 kcal Total: -79.26 -1.14 -80.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110318492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.035 kcal (2) G-P(sol) polarization free energy of solvation -79.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds