Wall clock time and date at job start Sat Apr 11 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42909 * 109.46856 * 2 1 4 4 C 1.42898 * 114.00132 * 184.92480 * 3 2 1 5 5 C 1.52994 * 109.47292 * 175.07639 * 4 3 2 6 6 C 1.50700 * 115.54998 * 295.87863 * 5 4 3 7 7 O 1.21284 * 120.00045 * 100.45064 * 6 5 4 8 8 N 1.34778 * 120.00250 * 280.45321 * 6 5 4 9 9 C 1.47081 * 120.88173 * 175.08228 * 8 6 5 10 10 C 1.53239 * 108.51787 * 231.16276 * 9 8 6 11 11 N 1.46907 * 109.34133 * 306.16828 * 10 9 8 12 12 C 1.46895 * 111.00213 * 187.25587 * 11 10 9 13 13 C 1.50702 * 109.47321 * 170.00203 * 12 11 10 14 14 O 1.21296 * 119.99335 * 359.97438 * 13 12 11 15 15 N 1.34764 * 120.00148 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00239 * 179.97438 * 15 13 12 17 17 H 1.08007 * 119.99825 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00474 * 179.97438 * 16 15 13 19 19 N 1.31407 * 119.99957 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00069 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47327 * 60.00005 * 20 18 16 22 22 H 1.48505 * 109.46990 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46970 * 299.99875 * 20 18 16 24 24 C 1.46901 * 111.26620 * 63.10349 * 11 10 9 25 25 C 1.47077 * 120.87964 * 355.05519 * 8 6 5 26 26 C 1.52995 * 117.51743 * 81.57648 * 5 4 3 27 27 C 1.52991 * 117.50327 * 150.20783 * 5 4 3 28 28 H 1.08996 * 109.47400 * 304.96654 * 1 2 3 29 29 H 1.09001 * 109.47501 * 64.97338 * 1 2 3 30 30 H 1.09007 * 109.46976 * 184.97148 * 1 2 3 31 31 H 1.09001 * 109.47314 * 240.00406 * 2 1 3 32 32 H 1.08997 * 109.47415 * 119.99845 * 2 1 3 33 33 H 1.09006 * 109.46720 * 55.07731 * 4 3 2 34 34 H 1.08999 * 109.47579 * 295.08253 * 4 3 2 35 35 H 1.08994 * 109.63022 * 111.45080 * 9 8 6 36 36 H 1.09004 * 109.79043 * 350.96083 * 9 8 6 37 37 H 1.09005 * 109.49487 * 186.20777 * 10 9 8 38 38 H 1.08999 * 109.49642 * 66.12871 * 10 9 8 39 39 H 1.09003 * 109.46811 * 290.00139 * 12 11 10 40 40 H 1.08997 * 109.47204 * 49.99754 * 12 11 10 41 41 H 0.96997 * 120.00650 * 359.97438 * 15 13 12 42 42 H 0.97001 * 120.00097 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.49430 * 56.86101 * 24 11 10 44 44 H 1.08998 * 109.49269 * 176.93617 * 24 11 10 45 45 H 1.08995 * 109.63114 * 248.54910 * 25 8 6 46 46 H 1.09004 * 109.62843 * 8.93735 * 25 8 6 47 47 H 1.09003 * 117.50365 * 214.97046 * 26 5 4 48 48 H 1.08996 * 117.50248 * 359.97438 * 26 5 4 49 49 H 1.09004 * 117.49829 * 359.97438 * 27 5 4 50 50 H 1.08999 * 117.50571 * 144.99707 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4262 1.4619 -0.1121 5 6 3.8115 2.9382 -0.2252 6 6 3.3120 3.6477 -1.4574 7 8 2.3310 4.3579 -1.3925 8 7 3.9554 3.4930 -2.6315 9 6 3.4249 4.0886 -3.8673 10 6 3.3604 2.9997 -4.9436 11 7 4.6798 2.3673 -5.0755 12 6 4.7070 1.4382 -6.2131 13 6 6.1255 0.9983 -6.4687 14 8 7.0254 1.4180 -5.7720 15 7 6.3943 0.1396 -7.4719 16 6 7.6848 -0.2602 -7.7048 17 1 8.4862 0.1134 -7.0845 18 6 7.9619 -1.1460 -8.7389 19 7 6.9869 -1.6010 -9.4933 20 14 9.7203 -1.6912 -9.0557 21 1 10.2528 -2.3718 -7.8480 22 1 9.7478 -2.6300 -10.2061 23 1 10.5582 -0.5049 -9.3653 24 6 5.0725 1.6896 -3.8328 25 6 5.2071 2.7247 -2.7109 26 6 3.8970 3.7478 1.0702 27 6 5.1756 3.3567 0.3266 28 1 -0.3634 0.5889 0.8421 29 1 -0.3634 0.4347 -0.9312 30 1 -0.3633 -1.0239 0.0891 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7647 0.9289 -1.0007 34 1 3.8965 1.0304 0.7715 35 1 4.0827 4.8921 -4.1983 36 1 2.4254 4.4844 -3.6867 37 1 3.0742 3.4461 -5.8960 38 1 2.6241 2.2487 -4.6577 39 1 4.0919 0.5675 -5.9857 40 1 4.3161 1.9377 -7.0995 41 1 5.6747 -0.1957 -8.0293 42 1 7.1804 -2.2191 -10.2154 43 1 4.3123 0.9567 -3.5622 44 1 6.0279 1.1859 -3.9794 45 1 6.0362 3.3972 -2.9307 46 1 5.3872 2.2193 -1.7621 47 1 3.5920 4.7935 1.0313 48 1 3.6783 3.2288 2.0034 49 1 5.7986 2.5803 0.7708 50 1 5.7119 4.1451 -0.2014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113027675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:34 Heat of formation + Delta-G solvation = -73.773353 kcal Electronic energy + Delta-G solvation = -30640.986388 eV Core-core repulsion = 26476.710644 eV Total energy + Delta-G solvation = -4164.275744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66544 -38.95336 -38.17528 -37.30288 -36.49018 -34.45723 -33.77106 -31.57844 -31.30590 -31.10548 -28.90764 -27.39143 -25.88037 -24.25997 -23.82410 -23.10663 -22.75907 -22.56044 -20.53058 -19.30166 -18.62978 -17.90592 -17.35271 -16.62282 -16.43803 -16.16155 -15.96163 -15.60794 -15.08584 -14.89608 -14.80079 -14.57282 -14.38718 -14.01158 -13.76922 -13.65422 -13.59008 -13.49701 -12.95810 -12.71246 -12.44510 -12.29990 -11.98173 -11.86467 -11.75857 -11.61595 -11.55485 -11.46667 -11.26729 -11.20139 -11.13108 -10.88563 -10.77051 -10.50298 -10.47404 -10.25263 -9.90110 -9.62268 -9.50505 -8.84100 -8.38722 -8.02397 -7.92003 -6.45560 -3.86650 2.54943 2.83134 3.05693 3.16701 3.23121 3.26927 3.69788 3.84614 3.92181 4.19361 4.26727 4.37417 4.58741 4.64829 4.78850 4.86830 4.93150 4.99946 5.06497 5.09270 5.11355 5.19809 5.20380 5.29839 5.31431 5.33114 5.42152 5.42665 5.46897 5.57251 5.61456 5.66042 5.73242 5.78904 5.81134 5.86072 5.87570 5.88850 6.12897 6.17167 6.22033 6.50697 6.93074 7.12753 7.28440 7.42050 7.51097 8.01794 8.15847 8.57097 9.13703 9.49993 10.01188 10.72018 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.002498 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.344558 B =11207.888667 C =11564.839493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.378 6.378 4 C 0.107 3.893 5 C -0.157 4.157 6 C 0.558 3.442 7 O -0.535 6.535 8 N -0.608 5.608 9 C 0.120 3.880 10 C 0.041 3.959 11 N -0.514 5.514 12 C 0.046 3.954 13 C 0.443 3.557 14 O -0.579 6.579 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.039 3.961 25 C 0.115 3.885 26 C -0.135 4.135 27 C -0.156 4.156 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.024 0.976 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.108 0.892 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 4.564 17.477 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.298 6.298 4 C 0.030 3.970 5 C -0.160 4.160 6 C 0.345 3.655 7 O -0.412 6.412 8 N -0.342 5.342 9 C -0.003 4.003 10 C -0.088 4.088 11 N -0.238 5.238 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.463 6.463 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.089 4.089 25 C -0.008 4.008 26 C -0.172 4.172 27 C -0.193 4.193 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.134 0.866 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.126 0.874 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.073 5.614 17.719 20.684 hybrid contribution -0.011 -1.582 -0.685 1.724 sum -9.084 4.033 17.034 19.722 Atomic orbital electron populations 1.21727 0.93624 1.02140 1.03268 1.22481 0.95818 0.83681 1.00063 1.87997 1.20645 1.26298 1.94817 1.21833 0.82459 0.92001 1.00702 1.21245 1.03330 0.96015 0.95459 1.19314 0.82621 0.80497 0.83066 1.90664 1.26526 1.39041 1.84937 1.48178 1.25233 1.53240 1.07550 1.21675 1.00580 0.95444 0.82575 1.22511 0.90135 0.96838 0.99320 1.61504 1.26100 1.32777 1.03443 1.21854 0.97112 0.95081 0.94443 1.19701 0.89562 0.83638 0.84231 1.90472 1.47009 1.58998 1.49845 1.41866 1.09706 1.39812 1.28515 1.19643 0.85041 1.23965 1.14302 0.87924 1.25263 0.99652 0.96946 0.96015 1.69601 1.32109 1.32745 1.19811 0.85924 0.81925 0.78541 0.77865 1.19908 1.20983 1.19860 1.22650 1.02942 0.94671 0.88660 1.21942 0.85712 0.94237 0.98911 1.22970 0.99357 1.00970 0.93934 1.23209 0.89621 1.03751 1.02746 0.91742 0.91893 0.91108 0.93342 0.93397 0.92406 0.92150 0.90601 0.88985 0.89471 0.94770 0.93522 0.89173 0.77486 0.91779 0.95749 0.86643 0.90059 0.89573 0.87920 0.87738 0.87400 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.53 6.66 37.16 0.25 0.78 16 3 O -0.38 -4.67 10.26 -35.23 -0.36 -5.03 16 4 C 0.11 1.11 5.56 37.15 0.21 1.31 16 5 C -0.16 -1.74 1.02 -155.67 -0.16 -1.89 16 6 C 0.56 7.92 6.79 -10.98 -0.07 7.85 16 7 O -0.54 -9.42 16.47 5.55 0.09 -9.33 16 8 N -0.61 -8.11 3.01 -172.47 -0.52 -8.63 16 9 C 0.12 1.56 6.58 -3.60 -0.02 1.54 16 10 C 0.04 0.54 5.62 -3.70 -0.02 0.52 16 11 N -0.51 -8.18 4.37 -235.76 -1.03 -9.22 16 12 C 0.05 0.79 5.45 -4.98 -0.03 0.77 16 13 C 0.44 9.96 7.44 -10.99 -0.08 9.88 16 14 O -0.58 -14.65 13.91 5.54 0.08 -14.57 16 15 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 16 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 17 H 0.10 2.89 7.16 -52.48 -0.38 2.52 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 20 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.04 0.59 5.26 -3.70 -0.02 0.57 16 25 C 0.11 1.46 6.14 -3.60 -0.02 1.43 16 26 C -0.13 -1.27 9.87 -26.74 -0.26 -1.53 16 27 C -0.16 -1.28 8.27 -26.74 -0.22 -1.50 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.60 7.57 -51.93 -0.39 0.21 16 34 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.22 7.11 -51.93 -0.37 0.85 16 37 H 0.09 1.01 7.99 -51.93 -0.41 0.60 16 38 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.09 1.40 7.97 -51.93 -0.41 0.99 16 41 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.12 2.08 5.77 -51.93 -0.30 1.78 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.09 0.91 4.75 -51.93 -0.25 0.66 16 47 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 403.91 15.07 6.09 6.09 Total: -1.00 -32.88 403.91 -8.64 -41.52 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -8.31 Total: 9.71 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -0.32 Total: 11.09 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.88 Total: -55.02 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.19 Total: -28.93 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.88 -8.64 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113027675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.256 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds