Wall clock time and date at job start Sat Apr 11 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42909 * 109.46856 * 2 1 4 4 C 1.42898 * 114.00132 * 184.92480 * 3 2 1 5 5 C 1.52994 * 109.47292 * 175.07639 * 4 3 2 6 6 C 1.50700 * 115.54998 * 295.87863 * 5 4 3 7 7 O 1.21284 * 120.00045 * 100.45064 * 6 5 4 8 8 N 1.34778 * 120.00250 * 280.45321 * 6 5 4 9 9 C 1.47081 * 120.88173 * 175.08228 * 8 6 5 10 10 C 1.53239 * 108.51787 * 231.16276 * 9 8 6 11 11 N 1.46907 * 109.34133 * 306.16828 * 10 9 8 12 12 C 1.46895 * 111.00213 * 187.25587 * 11 10 9 13 13 C 1.50702 * 109.47321 * 170.00203 * 12 11 10 14 14 O 1.21296 * 119.99335 * 359.97438 * 13 12 11 15 15 N 1.34764 * 120.00148 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00239 * 179.97438 * 15 13 12 17 17 H 1.08007 * 119.99825 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00474 * 179.97438 * 16 15 13 19 19 N 1.31407 * 119.99957 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00069 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47327 * 60.00005 * 20 18 16 22 22 H 1.48505 * 109.46990 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46970 * 299.99875 * 20 18 16 24 24 C 1.46901 * 111.26620 * 63.10349 * 11 10 9 25 25 C 1.47077 * 120.87964 * 355.05519 * 8 6 5 26 26 C 1.52995 * 117.51743 * 81.57648 * 5 4 3 27 27 C 1.52991 * 117.50327 * 150.20783 * 5 4 3 28 28 H 1.08996 * 109.47400 * 304.96654 * 1 2 3 29 29 H 1.09001 * 109.47501 * 64.97338 * 1 2 3 30 30 H 1.09007 * 109.46976 * 184.97148 * 1 2 3 31 31 H 1.09001 * 109.47314 * 240.00406 * 2 1 3 32 32 H 1.08997 * 109.47415 * 119.99845 * 2 1 3 33 33 H 1.09006 * 109.46720 * 55.07731 * 4 3 2 34 34 H 1.08999 * 109.47579 * 295.08253 * 4 3 2 35 35 H 1.08994 * 109.63022 * 111.45080 * 9 8 6 36 36 H 1.09004 * 109.79043 * 350.96083 * 9 8 6 37 37 H 1.09005 * 109.49487 * 186.20777 * 10 9 8 38 38 H 1.08999 * 109.49642 * 66.12871 * 10 9 8 39 39 H 1.09003 * 109.46811 * 290.00139 * 12 11 10 40 40 H 1.08997 * 109.47204 * 49.99754 * 12 11 10 41 41 H 0.96997 * 120.00650 * 359.97438 * 15 13 12 42 42 H 0.97001 * 120.00097 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.49430 * 56.86101 * 24 11 10 44 44 H 1.08998 * 109.49269 * 176.93617 * 24 11 10 45 45 H 1.08995 * 109.63114 * 248.54910 * 25 8 6 46 46 H 1.09004 * 109.62843 * 8.93735 * 25 8 6 47 47 H 1.09003 * 117.50365 * 214.97046 * 26 5 4 48 48 H 1.08996 * 117.50248 * 359.97438 * 26 5 4 49 49 H 1.09004 * 117.49829 * 359.97438 * 27 5 4 50 50 H 1.08999 * 117.50571 * 144.99707 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4262 1.4619 -0.1121 5 6 3.8115 2.9382 -0.2252 6 6 3.3120 3.6477 -1.4574 7 8 2.3310 4.3579 -1.3925 8 7 3.9554 3.4930 -2.6315 9 6 3.4249 4.0886 -3.8673 10 6 3.3604 2.9997 -4.9436 11 7 4.6798 2.3673 -5.0755 12 6 4.7070 1.4382 -6.2131 13 6 6.1255 0.9983 -6.4687 14 8 7.0254 1.4180 -5.7720 15 7 6.3943 0.1396 -7.4719 16 6 7.6848 -0.2602 -7.7048 17 1 8.4862 0.1134 -7.0845 18 6 7.9619 -1.1460 -8.7389 19 7 6.9869 -1.6010 -9.4933 20 14 9.7203 -1.6912 -9.0557 21 1 10.2528 -2.3718 -7.8480 22 1 9.7478 -2.6300 -10.2061 23 1 10.5582 -0.5049 -9.3653 24 6 5.0725 1.6896 -3.8328 25 6 5.2071 2.7247 -2.7109 26 6 3.8970 3.7478 1.0702 27 6 5.1756 3.3567 0.3266 28 1 -0.3634 0.5889 0.8421 29 1 -0.3634 0.4347 -0.9312 30 1 -0.3633 -1.0239 0.0891 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7647 0.9289 -1.0007 34 1 3.8965 1.0304 0.7715 35 1 4.0827 4.8921 -4.1983 36 1 2.4254 4.4844 -3.6867 37 1 3.0742 3.4461 -5.8960 38 1 2.6241 2.2487 -4.6577 39 1 4.0919 0.5675 -5.9857 40 1 4.3161 1.9377 -7.0995 41 1 5.6747 -0.1957 -8.0293 42 1 7.1804 -2.2191 -10.2154 43 1 4.3123 0.9567 -3.5622 44 1 6.0279 1.1859 -3.9794 45 1 6.0362 3.3972 -2.9307 46 1 5.3872 2.2193 -1.7621 47 1 3.5920 4.7935 1.0313 48 1 3.6783 3.2288 2.0034 49 1 5.7986 2.5803 0.7708 50 1 5.7119 4.1451 -0.2014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113027675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:33 Heat of formation + Delta-G solvation = -97.245245 kcal Electronic energy + Delta-G solvation = -30642.004205 eV Core-core repulsion = 26476.710644 eV Total energy + Delta-G solvation = -4165.293561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69483 -40.40740 -39.23781 -38.58422 -37.37668 -36.04446 -35.35876 -33.25057 -32.28555 -32.21096 -30.24946 -28.21671 -27.40778 -25.76548 -24.97022 -23.92790 -23.73226 -23.28716 -21.59392 -21.04705 -19.90293 -19.60919 -18.27331 -17.81225 -17.44046 -17.34474 -16.97686 -16.62399 -16.49513 -16.38946 -16.08773 -15.82916 -15.44719 -15.37508 -15.24864 -15.16271 -14.48064 -14.28716 -14.17268 -13.85392 -13.53064 -13.45801 -13.23746 -13.13190 -12.97659 -12.79843 -12.52611 -12.46502 -12.41353 -12.36885 -12.31014 -12.19003 -12.16045 -12.10552 -11.62412 -11.41691 -11.25608 -10.79376 -10.53710 -10.33330 -9.98679 -9.79078 -9.24784 -8.44156 -5.92454 1.41357 1.43635 1.48896 1.53997 1.83754 2.07634 2.29105 2.30845 2.70570 2.96969 3.23029 3.35418 3.37720 3.60219 3.84546 3.85752 3.91814 3.97749 4.10571 4.12269 4.19175 4.24058 4.25269 4.37839 4.43961 4.44728 4.45047 4.49891 4.51934 4.58030 4.69126 4.69966 4.75356 4.80903 4.83470 4.90880 4.94070 4.97667 5.02611 5.14816 5.20878 5.40642 5.43587 5.80610 6.03895 6.11064 6.19845 6.35404 6.62708 7.07872 7.15336 7.59233 8.14040 8.73067 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.002498 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.344558 B =11207.888667 C =11564.839493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.408 6.408 4 C 0.107 3.893 5 C -0.179 4.179 6 C 0.554 3.446 7 O -0.577 6.577 8 N -0.607 5.607 9 C 0.118 3.882 10 C 0.048 3.952 11 N -0.528 5.528 12 C 0.058 3.942 13 C 0.444 3.556 14 O -0.609 6.609 15 N -0.575 5.575 16 C -0.329 4.329 17 H 0.082 0.918 18 C -0.014 4.014 19 N -0.923 5.923 20 Si 0.991 3.009 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.272 1.272 24 C 0.043 3.957 25 C 0.125 3.875 26 C -0.135 4.135 27 C -0.133 4.133 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.030 0.970 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.110 0.890 47 H 0.088 0.912 48 H 0.122 0.878 49 H 0.137 0.863 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.067 3.902 18.425 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.328 6.328 4 C 0.030 3.970 5 C -0.182 4.182 6 C 0.343 3.657 7 O -0.457 6.457 8 N -0.340 5.340 9 C -0.004 4.004 10 C -0.080 4.080 11 N -0.253 5.253 12 C -0.073 4.073 13 C 0.232 3.768 14 O -0.495 6.495 15 N -0.212 5.212 16 C -0.459 4.459 17 H 0.100 0.900 18 C -0.213 4.213 19 N -0.564 5.564 20 Si 0.815 3.185 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.086 4.086 25 C 0.002 3.998 26 C -0.173 4.173 27 C -0.170 4.170 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.228 0.772 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.128 0.872 47 H 0.106 0.894 48 H 0.140 0.860 49 H 0.155 0.845 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.774 4.950 18.665 21.210 hybrid contribution -0.152 -1.317 -0.943 1.627 sum -8.926 3.632 17.722 20.173 Atomic orbital electron populations 1.21754 0.93329 1.03321 1.02267 1.22648 0.96178 0.82797 1.00937 1.87969 1.21875 1.27930 1.95010 1.21947 0.81855 0.91411 1.01779 1.21303 1.05855 0.96476 0.94614 1.19906 0.81931 0.79891 0.83987 1.90635 1.28367 1.41010 1.85662 1.48252 1.25249 1.52858 1.07628 1.21688 1.00550 0.95554 0.82624 1.22520 0.88568 0.96582 1.00345 1.61489 1.27911 1.32625 1.03316 1.21728 0.93350 0.96261 0.95988 1.20620 0.91540 0.82022 0.82644 1.90454 1.48844 1.59625 1.50544 1.41935 1.09053 1.40769 1.29454 1.19628 0.85838 1.25337 1.15082 0.89999 1.26016 1.03421 0.96510 0.95376 1.69668 1.33655 1.32996 1.20059 0.85016 0.77362 0.78160 0.77989 1.19518 1.19840 1.19764 1.22536 1.01456 0.95363 0.89211 1.21884 0.85152 0.93582 0.99165 1.23032 1.00130 1.00153 0.93954 1.23349 0.88715 1.03907 1.01055 0.92097 0.93409 0.88934 0.93411 0.91451 0.92805 0.89361 0.90311 0.89267 0.87564 0.94702 0.91850 0.87039 0.77154 0.91409 0.95207 0.89558 0.90564 0.87203 0.89368 0.85994 0.84536 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.88 6.66 71.98 0.48 1.36 16 3 O -0.41 -9.63 10.26 -148.98 -1.53 -11.16 16 4 C 0.11 2.00 5.56 71.98 0.40 2.40 16 5 C -0.18 -3.68 1.02 -52.93 -0.05 -3.74 16 6 C 0.55 15.47 6.79 87.66 0.60 16.07 16 7 O -0.58 -20.57 16.47 -3.04 -0.05 -20.62 16 8 N -0.61 -15.73 3.01 -817.95 -2.46 -18.19 16 9 C 0.12 3.00 6.58 86.35 0.57 3.57 16 10 C 0.05 1.19 5.62 86.38 0.49 1.68 16 11 N -0.53 -16.25 4.37 -899.80 -3.93 -20.18 16 12 C 0.06 1.91 5.45 85.56 0.47 2.37 16 13 C 0.44 20.02 7.44 87.66 0.65 20.68 16 14 O -0.61 -31.26 13.91 -3.08 -0.04 -31.30 16 15 N -0.57 -28.42 5.29 -306.99 -1.62 -30.04 16 16 C -0.33 -18.06 9.68 84.04 0.81 -17.25 16 17 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 18 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 19 N -0.92 -49.00 13.05 21.66 0.28 -48.71 16 20 Si 0.99 41.88 29.55 68.60 2.03 43.90 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 C 0.04 1.27 5.26 86.38 0.45 1.72 16 25 C 0.12 3.03 6.14 86.35 0.53 3.56 16 26 C -0.14 -2.31 9.87 30.59 0.30 -2.01 16 27 C -0.13 -1.84 8.27 30.59 0.25 -1.59 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.02 7.57 -2.38 -0.02 1.00 16 34 H 0.09 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 2.34 7.11 -2.38 -0.02 2.32 16 37 H 0.11 2.23 7.99 -2.38 -0.02 2.21 16 38 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 40 H 0.11 3.24 7.97 -2.39 -0.02 3.22 16 41 H 0.39 18.72 7.90 -92.71 -0.73 17.98 16 42 H 0.28 13.84 8.31 -92.71 -0.77 13.06 16 43 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.09 3.12 5.77 -2.39 -0.01 3.10 16 45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.11 2.12 4.75 -2.39 -0.01 2.11 16 47 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.14 1.13 8.14 -2.38 -0.02 1.11 16 50 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -72.08 403.91 0.03 -72.05 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.21 Total: 37.35 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 7.15 Total: 26.90 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -7.73 Total: -117.13 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -1.62 Total: -63.08 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -72.08 0.03 -72.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113027675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.195 kcal (2) G-P(sol) polarization free energy of solvation -72.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds