Wall clock time and date at job start Sat Apr 11 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47097 * 2 1 4 4 C 1.42898 * 113.99942 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.54907 * 355.58227 * 4 3 2 6 6 C 1.53002 * 117.49971 * 141.25314 * 4 3 2 7 7 C 1.53000 * 117.50097 * 209.91102 * 4 3 2 8 8 H 1.09008 * 117.49673 * 359.97438 * 7 4 3 9 9 C 1.50692 * 117.50104 * 144.97165 * 7 4 3 10 10 O 1.21282 * 119.99963 * 0.02562 * 9 7 4 11 11 N 1.34778 * 120.00351 * 180.02562 * 9 7 4 12 12 C 1.46494 * 120.00083 * 180.02562 * 11 9 7 13 13 C 1.53122 * 109.52242 * 274.86766 * 12 11 9 14 14 C 1.53042 * 109.27757 * 182.50462 * 13 12 11 15 15 N 1.46847 * 109.57268 * 59.08892 * 14 13 12 16 16 C 1.46905 * 110.99951 * 174.19559 * 15 14 13 17 17 C 1.50705 * 109.46631 * 294.20762 * 16 15 14 18 18 O 1.21287 * 120.00177 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99552 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99576 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00344 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99759 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99884 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00270 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47743 * 89.99439 * 24 22 20 26 26 H 1.48506 * 109.47289 * 210.00004 * 24 22 20 27 27 H 1.48509 * 109.47024 * 329.99588 * 24 22 20 28 28 C 1.46856 * 111.19813 * 298.28537 * 15 14 13 29 29 C 1.53040 * 109.51808 * 61.74429 * 28 15 14 30 30 H 1.08991 * 109.47243 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47445 * 300.00631 * 1 2 3 32 32 H 1.09005 * 109.46516 * 60.00250 * 1 2 3 33 33 H 1.08991 * 109.47256 * 239.99800 * 2 1 3 34 34 H 1.08999 * 109.46821 * 119.99113 * 2 1 3 35 35 H 1.09000 * 117.49996 * 215.00756 * 6 4 3 36 36 H 1.08999 * 117.49664 * 0.02562 * 6 4 3 37 37 H 0.97000 * 119.99701 * 359.97438 * 11 9 7 38 38 H 1.09000 * 109.52651 * 34.99918 * 12 11 9 39 39 H 1.08996 * 109.50330 * 302.38892 * 13 12 11 40 40 H 1.09006 * 109.50066 * 62.50099 * 13 12 11 41 41 H 1.09002 * 109.40990 * 299.07504 * 14 13 12 42 42 H 1.09002 * 109.45688 * 179.13032 * 14 13 12 43 43 H 1.08999 * 109.46908 * 54.20443 * 16 15 14 44 44 H 1.08999 * 109.46993 * 174.20882 * 16 15 14 45 45 H 0.96993 * 120.00370 * 0.02562 * 19 17 16 46 46 H 0.96999 * 119.99936 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.46184 * 301.73009 * 28 15 14 48 48 H 1.08999 * 109.45239 * 181.75362 * 28 15 14 49 49 H 1.08993 * 109.49974 * 180.87916 * 29 28 15 50 50 H 1.09004 * 109.50024 * 60.76332 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9769 0.5198 0.0767 6 6 4.0520 2.5709 -0.8487 7 6 4.0420 2.6887 0.6774 8 1 3.3574 3.4112 1.1219 9 6 5.3524 2.5060 1.3987 10 8 5.8825 1.4155 1.4266 11 7 5.9354 3.5545 2.0130 12 6 7.2096 3.3770 2.7138 13 6 6.9454 2.8818 4.1384 14 6 8.2756 2.7581 4.8851 15 7 8.9453 4.0646 4.9169 16 6 10.1586 4.0142 5.7436 17 6 9.7774 3.7656 7.1803 18 8 8.6100 3.6429 7.4855 19 7 10.7339 3.6796 8.1260 20 6 10.3871 3.4539 9.4331 21 1 9.3475 3.3455 9.7050 22 6 11.3732 3.3647 10.4079 23 7 11.0408 3.1489 11.6609 24 14 13.1712 3.5529 9.9378 25 1 13.5595 4.9833 10.0286 26 1 14.0115 2.7521 10.8640 27 1 13.3720 3.0729 8.5469 28 6 9.2519 4.5372 3.5607 29 6 7.9507 4.7155 2.7750 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 5.0065 2.3614 -1.3314 36 1 3.3739 3.2159 -1.4076 37 1 5.5117 4.4267 1.9905 38 1 7.8195 2.6470 2.1816 39 1 6.3025 3.5926 4.6574 40 1 6.4564 1.9083 4.1005 41 1 8.9122 2.0360 4.3739 42 1 8.0895 2.4204 5.9047 43 1 10.8032 3.2079 5.3940 44 1 10.6896 4.9631 5.6676 45 1 11.6674 3.7781 7.8820 46 1 11.7291 3.0870 12.3415 47 1 9.8839 3.8067 3.0558 48 1 9.7749 5.4918 3.6186 49 1 8.1795 5.0513 1.7637 50 1 7.3241 5.4561 3.2720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226228203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:46 Heat of formation + Delta-G solvation = -81.910289 kcal Electronic energy + Delta-G solvation = -29044.288185 eV Core-core repulsion = 24879.659597 eV Total energy + Delta-G solvation = -4164.628588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48869 -39.31546 -38.51239 -37.63779 -35.53192 -34.96552 -33.89611 -31.86273 -31.55003 -31.14425 -30.77136 -27.50078 -25.18964 -23.94929 -23.30516 -23.17686 -22.56717 -22.15244 -20.49019 -19.73462 -19.34947 -18.26351 -18.05771 -16.93569 -16.37523 -15.99244 -15.95087 -15.53921 -15.40832 -15.03525 -14.91597 -14.63587 -14.37800 -14.05497 -13.61034 -13.46333 -13.34304 -13.16504 -13.03056 -12.97319 -12.76391 -12.55101 -12.47403 -12.24070 -11.82869 -11.77854 -11.63636 -11.38926 -11.26404 -11.17150 -11.14376 -10.96418 -10.69826 -10.59807 -10.54562 -10.08047 -9.96507 -9.56981 -9.53256 -9.17114 -8.54237 -8.16672 -7.93948 -6.29940 -3.81194 2.22876 2.66970 3.03225 3.07437 3.15678 3.24142 3.48649 3.75069 3.92417 4.11278 4.32712 4.39058 4.54556 4.61499 4.66896 4.73005 4.81201 4.84434 4.88483 4.97186 5.00282 5.07145 5.22702 5.28076 5.29717 5.36611 5.39193 5.48305 5.48889 5.53607 5.59964 5.62011 5.68744 5.70656 5.74850 5.89617 5.93453 5.97083 6.07791 6.24055 6.45065 6.49845 6.77992 7.18158 7.30271 7.35239 7.60056 8.01496 8.16071 8.61698 8.96702 9.43916 9.85121 10.83230 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.001777 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.640056 B =15753.355032 C =16622.483644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.054 3.946 5 H 0.125 0.875 6 C -0.155 4.155 7 C -0.195 4.195 8 H 0.130 0.870 9 C 0.545 3.455 10 O -0.542 6.542 11 N -0.718 5.718 12 C 0.143 3.857 13 C -0.120 4.120 14 C 0.054 3.946 15 N -0.516 5.516 16 C 0.043 3.957 17 C 0.453 3.547 18 O -0.558 6.558 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.058 3.942 29 C -0.120 4.120 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.401 0.599 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.107 0.893 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.032 0.968 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.480 0.100 -27.725 30.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.275 6.275 4 C -0.005 4.005 5 H 0.143 0.857 6 C -0.193 4.193 7 C -0.216 4.216 8 H 0.148 0.852 9 C 0.331 3.669 10 O -0.419 6.419 11 N -0.368 5.368 12 C 0.039 3.961 13 C -0.159 4.159 14 C -0.073 4.073 15 N -0.241 5.241 16 C -0.088 4.088 17 C 0.238 3.762 18 O -0.440 6.440 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.070 4.070 29 C -0.158 4.158 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.236 0.764 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.125 0.875 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.050 0.950 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.278 -0.315 -27.043 29.701 hybrid contribution 2.047 -0.077 -0.417 2.091 sum -10.230 -0.392 -27.460 29.307 Atomic orbital electron populations 1.21759 0.93416 1.02535 1.03208 1.22593 0.95617 0.83045 1.00697 1.87808 1.18440 1.27338 1.93949 1.22593 0.82118 0.94346 1.01450 0.85746 1.23448 1.03041 1.02169 0.90654 1.22704 0.97532 1.04774 0.96612 0.85221 1.19555 0.85023 0.84219 0.78105 1.90707 1.64809 1.25311 1.61077 1.46008 1.24099 1.12151 1.54530 1.21142 0.83946 0.97925 0.93100 1.21918 0.98258 1.01908 0.93840 1.22231 0.93672 0.88530 1.02914 1.61536 1.23919 1.28523 1.10099 1.21870 0.91605 1.01759 0.93574 1.19652 0.86458 0.83982 0.86076 1.90526 1.18151 1.53574 1.81742 1.42215 1.07072 1.65593 1.08235 1.19428 0.97233 1.46163 0.80442 0.86275 1.25033 0.98404 0.97648 0.95083 1.69623 1.33920 1.48401 1.00254 0.86673 0.85173 0.78985 0.78550 1.19626 1.20227 1.19544 1.22032 0.95777 1.00380 0.88848 1.21830 0.97212 0.96766 1.00024 0.90807 0.91692 0.91829 0.92913 0.92745 0.87497 0.87099 0.76446 0.89827 0.90599 0.91344 0.95769 0.87473 0.93343 0.89165 0.79742 0.91647 0.94965 0.90246 0.91118 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.41 6.53 37.16 0.24 0.65 16 3 O -0.36 -3.34 10.60 -35.23 -0.37 -3.71 16 4 C 0.05 0.48 5.95 -26.73 -0.16 0.32 16 5 H 0.13 1.18 7.45 -51.93 -0.39 0.79 16 6 C -0.16 -1.11 10.19 -26.69 -0.27 -1.39 16 7 C -0.19 -1.69 6.14 -91.74 -0.56 -2.25 16 8 H 0.13 0.96 8.14 -51.92 -0.42 0.54 16 9 C 0.54 6.10 7.58 -10.99 -0.08 6.02 16 10 O -0.54 -8.09 15.92 5.56 0.09 -8.00 16 11 N -0.72 -6.91 5.08 -53.69 -0.27 -7.18 16 12 C 0.14 1.63 2.52 -67.81 -0.17 1.46 16 13 C -0.12 -1.70 5.68 -26.65 -0.15 -1.85 16 14 C 0.05 0.89 5.10 -3.83 -0.02 0.87 16 15 N -0.52 -8.09 4.40 -236.10 -1.04 -9.13 16 16 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 17 C 0.45 10.21 7.46 -10.98 -0.08 10.13 16 18 O -0.56 -14.74 13.90 5.55 0.08 -14.67 16 19 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 20 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 21 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.82 13.96 55.50 0.77 -25.04 16 24 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 28 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 29 C -0.12 -1.17 5.57 -26.65 -0.15 -1.32 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.40 2.79 8.60 -40.82 -0.35 2.44 16 38 H 0.08 1.08 7.58 -51.93 -0.39 0.68 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 2.15 5.78 -51.93 -0.30 1.85 16 43 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 44 H 0.09 1.29 7.99 -51.93 -0.41 0.87 16 45 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 405.97 15.07 6.12 6.12 Total: -1.00 -34.63 405.97 -9.11 -43.75 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -8.39 Total: 11.51 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.32 Total: 5.79 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.59 Total: -55.45 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.21 Total: -26.38 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.63 -9.11 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226228203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.165 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds