Wall clock time and date at job start Sat Apr 11 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47337 * 2 1 4 4 C 1.42894 * 114.00050 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47022 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00219 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00138 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00141 * 179.97438 * 7 5 4 9 9 H 1.09001 * 115.55461 * 9.31451 * 8 7 5 10 10 C 1.53030 * 117.50808 * 223.60688 * 8 7 5 11 11 C 1.52743 * 59.94845 * 252.53048 * 10 8 7 12 12 C 1.53221 * 117.84328 * 107.73609 * 11 10 8 13 13 C 1.53263 * 108.61638 * 197.00646 * 12 11 10 14 14 N 1.46812 * 109.44683 * 304.40885 * 13 12 11 15 15 C 1.46897 * 110.99877 * 189.19710 * 14 13 12 16 16 C 1.50698 * 109.47542 * 300.23290 * 15 14 13 17 17 O 1.21290 * 119.99782 * 354.33572 * 16 15 14 18 18 N 1.34776 * 120.00129 * 174.33676 * 16 15 14 19 19 C 1.37101 * 120.00059 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99495 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99761 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00285 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99851 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47260 * 59.99517 * 23 21 19 25 25 H 1.48498 * 109.47493 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47148 * 300.00060 * 23 21 19 27 27 C 1.46812 * 111.57191 * 64.83104 * 14 13 12 28 28 C 1.53219 * 117.83971 * 252.25815 * 11 10 8 29 29 H 1.08997 * 109.46804 * 299.99970 * 1 2 3 30 30 H 1.09003 * 109.47108 * 59.99900 * 1 2 3 31 31 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47108 * 120.00100 * 2 1 3 33 33 H 1.09005 * 109.47077 * 239.99449 * 2 1 3 34 34 H 1.09000 * 109.46849 * 299.99530 * 4 3 2 35 35 H 1.09001 * 109.47827 * 59.99803 * 4 3 2 36 36 H 0.97000 * 119.99721 * 359.97438 * 7 5 4 37 37 H 1.09002 * 117.50151 * 0.02562 * 10 8 7 38 38 H 1.08997 * 117.51234 * 145.02749 * 10 8 7 39 39 H 1.09001 * 109.61351 * 316.75112 * 12 11 10 40 40 H 1.09001 * 109.61011 * 77.26788 * 12 11 10 41 41 H 1.09003 * 109.47395 * 184.41870 * 13 12 11 42 42 H 1.09000 * 109.47935 * 64.40771 * 13 12 11 43 43 H 1.09004 * 109.47184 * 60.23752 * 15 14 13 44 44 H 1.09004 * 109.46846 * 180.22958 * 15 14 13 45 45 H 0.96997 * 120.00167 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99791 * 180.02562 * 22 21 19 47 47 H 1.09009 * 109.47542 * 175.18139 * 27 14 13 48 48 H 1.08991 * 109.48287 * 55.16373 * 27 14 13 49 49 H 1.09001 * 109.61114 * 282.72916 * 28 11 10 50 50 H 1.09001 * 109.61507 * 43.07958 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 0.0001 6 8 2.9611 3.7728 0.0005 7 7 5.1210 3.2663 0.0002 8 6 5.4987 4.6817 0.0003 9 1 4.6824 5.3862 0.1595 10 6 6.6306 5.1112 -0.9357 11 6 6.8677 5.0465 0.5719 12 6 7.7429 3.9101 1.1106 13 6 7.5025 3.7802 2.6186 14 7 7.7567 5.0725 3.2672 15 6 7.7500 4.9377 4.7300 16 6 6.4080 4.4213 5.1808 17 8 5.5093 4.2858 4.3775 18 7 6.2063 4.1099 6.4765 19 6 4.9855 3.6395 6.8865 20 1 4.1854 3.5190 6.1712 21 6 4.7776 3.3190 8.2224 22 7 5.7511 3.4663 9.0928 23 14 3.1140 2.6789 8.7812 24 1 2.7989 1.4212 8.0572 25 1 3.1511 2.4127 10.2417 26 1 2.0696 3.6932 8.4888 27 6 6.7981 6.0943 2.8286 28 6 6.9942 6.3698 1.3337 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.8339 0.9764 0.8892 35 1 3.8334 0.9766 -0.8908 36 1 5.8075 2.5810 0.0003 37 1 7.0940 4.3406 -1.5519 38 1 6.5590 6.0982 -1.3925 39 1 7.4757 2.9764 0.6156 40 1 8.7927 4.1376 0.9256 41 1 8.1757 3.0283 3.0305 42 1 6.4699 3.4805 2.7977 43 1 8.5292 4.2387 5.0340 44 1 7.9367 5.9104 5.1853 45 1 6.9251 4.2179 7.1188 46 1 5.6059 3.2422 10.0253 47 1 6.9629 7.0129 3.3920 48 1 5.7827 5.7386 3.0024 49 1 7.9840 6.7949 1.1667 50 1 6.2328 7.0673 0.9846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265321356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:23 Heat of formation + Delta-G solvation = -86.631399 kcal Electronic energy + Delta-G solvation = -30602.171565 eV Core-core repulsion = 26437.338255 eV Total energy + Delta-G solvation = -4164.833310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30520 -39.30882 -38.29023 -37.47737 -35.82045 -33.88819 -33.20083 -31.65963 -31.33934 -30.73574 -30.08215 -27.73032 -26.24213 -24.14277 -23.15985 -22.97906 -22.31440 -21.40355 -20.54349 -19.34072 -18.69337 -17.86148 -17.26799 -16.89856 -16.55155 -16.01242 -15.89026 -15.33256 -14.87944 -14.80374 -14.61795 -14.44742 -14.09301 -13.99646 -13.75835 -13.52455 -13.25604 -13.00064 -12.93941 -12.61453 -12.50550 -12.24982 -11.96623 -11.79781 -11.63194 -11.51897 -11.43278 -11.42180 -11.18043 -11.13608 -10.58697 -10.58403 -10.45088 -10.24764 -10.22857 -9.86315 -9.83158 -9.60705 -9.46160 -9.15159 -8.63105 -7.99225 -7.38792 -6.45127 -3.86344 2.57292 2.69167 3.16939 3.23374 3.28398 3.81253 3.83646 3.84405 4.15328 4.37067 4.62229 4.70250 4.74454 4.79344 4.84125 4.90050 4.98676 5.04799 5.06713 5.11057 5.16214 5.20926 5.46064 5.47104 5.55119 5.66839 5.71970 5.73002 5.76840 5.89581 5.91112 5.92944 5.95964 6.02085 6.08539 6.10644 6.22304 6.29016 6.32281 6.49704 6.63431 6.79442 6.89156 7.40358 7.45317 7.51252 7.51547 8.01739 8.23412 8.56752 9.13809 9.50030 10.01048 10.71379 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006902 B = 0.004063 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4056.072538 B = 6890.015774 C =10342.009307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.046 3.954 5 C 0.520 3.480 6 O -0.516 6.516 7 N -0.697 5.697 8 C 0.094 3.906 9 H 0.135 0.865 10 C -0.189 4.189 11 C -0.116 4.116 12 C -0.072 4.072 13 C 0.043 3.957 14 N -0.513 5.513 15 C 0.042 3.958 16 C 0.405 3.595 17 O -0.590 6.590 18 N -0.557 5.557 19 C -0.302 4.302 20 H 0.101 0.899 21 C 0.025 3.975 22 N -0.900 5.900 23 Si 0.929 3.071 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.042 3.958 28 C -0.073 4.073 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.399 0.601 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.273 0.727 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -3.762 -18.161 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.282 6.282 4 C -0.034 4.034 5 C 0.305 3.695 6 O -0.390 6.390 7 N -0.349 5.349 8 C -0.011 4.011 9 H 0.152 0.848 10 C -0.227 4.227 11 C -0.118 4.118 12 C -0.110 4.110 13 C -0.085 4.085 14 N -0.236 5.236 15 C -0.090 4.090 16 C 0.191 3.809 17 O -0.477 6.477 18 N -0.193 5.193 19 C -0.431 4.431 20 H 0.119 0.881 21 C -0.177 4.177 22 N -0.540 5.540 23 Si 0.756 3.244 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.198 1.198 27 C -0.086 4.086 28 C -0.111 4.111 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.235 0.765 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.779 -2.976 -18.615 19.055 hybrid contribution -0.497 -1.179 1.145 1.717 sum 2.281 -4.155 -17.470 18.102 Atomic orbital electron populations 1.21730 0.93397 1.02187 1.03533 1.22554 0.96037 0.83353 1.00184 1.88028 1.18332 1.26376 1.95419 1.22154 0.84213 0.94476 1.02581 1.20171 0.82474 0.90595 0.76254 1.90726 1.49240 1.51696 1.47290 1.45195 1.06895 1.07335 1.75460 1.21684 0.92766 0.83370 1.03314 0.84750 1.23587 1.02983 1.03038 0.93107 1.21966 0.97507 0.98324 0.93972 1.21107 0.98993 0.95171 0.95722 1.22239 1.02698 0.91084 0.92523 1.62254 1.49509 1.07590 1.04273 1.22051 0.95901 1.02153 0.88925 1.21136 0.90843 0.85383 0.83584 1.90447 1.45300 1.59481 1.52424 1.42049 1.13808 1.56117 1.07313 1.19659 0.90532 1.39531 0.93421 0.88093 1.25260 0.99223 0.97573 0.95661 1.69604 1.32362 1.48403 1.03679 0.85950 0.81723 0.79450 0.77322 1.19932 1.20888 1.19839 1.22255 0.97630 0.94696 0.93987 1.21180 1.01682 0.93558 0.94674 0.91495 0.91791 0.91001 0.92971 0.93329 0.89917 0.90465 0.76536 0.88769 0.88151 0.92602 0.90987 0.91929 0.90650 0.89544 0.89395 0.77437 0.91750 0.91816 0.90586 0.91086 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.16 0.38 -1.02 16 2 C 0.06 0.56 6.66 37.16 0.25 0.81 16 3 O -0.36 -5.17 9.88 -55.14 -0.54 -5.72 16 4 C 0.05 0.54 6.42 36.01 0.23 0.77 16 5 C 0.52 7.84 7.91 -10.98 -0.09 7.76 16 6 O -0.52 -10.26 16.07 -14.35 -0.23 -10.49 16 7 N -0.70 -8.70 5.35 -53.91 -0.29 -8.99 16 8 C 0.09 1.25 6.10 -68.04 -0.42 0.83 16 9 H 0.13 2.10 7.40 -51.93 -0.38 1.71 16 10 C -0.19 -1.92 9.93 -26.85 -0.27 -2.18 16 11 C -0.12 -1.42 2.02 -154.53 -0.31 -1.73 16 12 C -0.07 -0.86 5.67 -26.48 -0.15 -1.01 16 13 C 0.04 0.66 4.96 -3.74 -0.02 0.65 16 14 N -0.51 -8.30 4.78 -235.88 -1.13 -9.43 16 15 C 0.04 0.73 5.82 -4.98 -0.03 0.70 16 16 C 0.41 9.22 7.19 -10.99 -0.08 9.14 16 17 O -0.59 -15.09 11.30 5.55 0.06 -15.03 16 18 N -0.56 -13.91 5.29 -10.97 -0.06 -13.97 16 19 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 23 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.04 0.69 5.05 -3.73 -0.02 0.67 16 28 C -0.07 -0.94 5.87 -26.48 -0.16 -1.10 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.40 3.83 6.85 -40.82 -0.28 3.55 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.56 6.18 -51.93 -0.32 0.24 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 42 H 0.08 1.47 5.79 -51.93 -0.30 1.17 16 43 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 44 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 45 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.06 1.00 8.02 -51.92 -0.42 0.58 16 48 H 0.08 1.56 5.79 -51.93 -0.30 1.26 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -34.14 400.92 -9.52 -43.65 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -8.16 Total: 15.07 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.91 Total: 6.33 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.75 Total: -56.04 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.71 Total: -31.24 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.14 -9.52 -43.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265321356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.976 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds