Wall clock time and date at job start Sat Apr 11 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47337 * 2 1 4 4 C 1.42894 * 114.00050 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47022 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00219 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00138 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00141 * 179.97438 * 7 5 4 9 9 H 1.09001 * 115.55461 * 9.31451 * 8 7 5 10 10 C 1.53030 * 117.50808 * 223.60688 * 8 7 5 11 11 C 1.52743 * 59.94845 * 252.53048 * 10 8 7 12 12 C 1.53221 * 117.84328 * 107.73609 * 11 10 8 13 13 C 1.53263 * 108.61638 * 197.00646 * 12 11 10 14 14 N 1.46812 * 109.44683 * 304.40885 * 13 12 11 15 15 C 1.46897 * 110.99877 * 189.19710 * 14 13 12 16 16 C 1.50698 * 109.47542 * 300.23290 * 15 14 13 17 17 O 1.21290 * 119.99782 * 354.33572 * 16 15 14 18 18 N 1.34776 * 120.00129 * 174.33676 * 16 15 14 19 19 C 1.37101 * 120.00059 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99495 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99761 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00285 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99851 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47260 * 59.99517 * 23 21 19 25 25 H 1.48498 * 109.47493 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47148 * 300.00060 * 23 21 19 27 27 C 1.46812 * 111.57191 * 64.83104 * 14 13 12 28 28 C 1.53219 * 117.83971 * 252.25815 * 11 10 8 29 29 H 1.08997 * 109.46804 * 299.99970 * 1 2 3 30 30 H 1.09003 * 109.47108 * 59.99900 * 1 2 3 31 31 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47108 * 120.00100 * 2 1 3 33 33 H 1.09005 * 109.47077 * 239.99449 * 2 1 3 34 34 H 1.09000 * 109.46849 * 299.99530 * 4 3 2 35 35 H 1.09001 * 109.47827 * 59.99803 * 4 3 2 36 36 H 0.97000 * 119.99721 * 359.97438 * 7 5 4 37 37 H 1.09002 * 117.50151 * 0.02562 * 10 8 7 38 38 H 1.08997 * 117.51234 * 145.02749 * 10 8 7 39 39 H 1.09001 * 109.61351 * 316.75112 * 12 11 10 40 40 H 1.09001 * 109.61011 * 77.26788 * 12 11 10 41 41 H 1.09003 * 109.47395 * 184.41870 * 13 12 11 42 42 H 1.09000 * 109.47935 * 64.40771 * 13 12 11 43 43 H 1.09004 * 109.47184 * 60.23752 * 15 14 13 44 44 H 1.09004 * 109.46846 * 180.22958 * 15 14 13 45 45 H 0.96997 * 120.00167 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99791 * 180.02562 * 22 21 19 47 47 H 1.09009 * 109.47542 * 175.18139 * 27 14 13 48 48 H 1.08991 * 109.48287 * 55.16373 * 27 14 13 49 49 H 1.09001 * 109.61114 * 282.72916 * 28 11 10 50 50 H 1.09001 * 109.61507 * 43.07958 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 0.0001 6 8 2.9611 3.7728 0.0005 7 7 5.1210 3.2663 0.0002 8 6 5.4987 4.6817 0.0003 9 1 4.6824 5.3862 0.1595 10 6 6.6306 5.1112 -0.9357 11 6 6.8677 5.0465 0.5719 12 6 7.7429 3.9101 1.1106 13 6 7.5025 3.7802 2.6186 14 7 7.7567 5.0725 3.2672 15 6 7.7500 4.9377 4.7300 16 6 6.4080 4.4213 5.1808 17 8 5.5093 4.2858 4.3775 18 7 6.2063 4.1099 6.4765 19 6 4.9855 3.6395 6.8865 20 1 4.1854 3.5190 6.1712 21 6 4.7776 3.3190 8.2224 22 7 5.7511 3.4663 9.0928 23 14 3.1140 2.6789 8.7812 24 1 2.7989 1.4212 8.0572 25 1 3.1511 2.4127 10.2417 26 1 2.0696 3.6932 8.4888 27 6 6.7981 6.0943 2.8286 28 6 6.9942 6.3698 1.3337 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.8339 0.9764 0.8892 35 1 3.8334 0.9766 -0.8908 36 1 5.8075 2.5810 0.0003 37 1 7.0940 4.3406 -1.5519 38 1 6.5590 6.0982 -1.3925 39 1 7.4757 2.9764 0.6156 40 1 8.7927 4.1376 0.9256 41 1 8.1757 3.0283 3.0305 42 1 6.4699 3.4805 2.7977 43 1 8.5292 4.2387 5.0340 44 1 7.9367 5.9104 5.1853 45 1 6.9251 4.2179 7.1188 46 1 5.6059 3.2422 10.0253 47 1 6.9629 7.0129 3.3920 48 1 5.7827 5.7386 3.0024 49 1 7.9840 6.7949 1.1667 50 1 6.2328 7.0673 0.9846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265321356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:22 Heat of formation + Delta-G solvation = -112.548868 kcal Electronic energy + Delta-G solvation = -30603.295431 eV Core-core repulsion = 26437.338255 eV Total energy + Delta-G solvation = -4165.957176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46114 -40.70744 -39.63890 -38.56463 -37.24010 -35.81477 -34.39479 -33.34383 -32.46319 -31.88651 -31.33865 -28.74041 -27.83571 -25.88043 -24.32401 -23.76054 -23.31446 -22.64349 -21.67951 -21.09470 -20.08261 -19.60147 -18.34789 -18.01407 -17.62050 -17.44961 -17.01199 -16.70535 -16.41695 -16.19554 -15.84465 -15.69897 -15.62400 -15.47434 -15.30009 -14.70367 -14.48612 -14.13149 -13.99218 -13.71385 -13.58958 -13.31199 -13.29177 -13.14687 -13.04091 -12.92849 -12.71773 -12.48786 -12.38542 -12.37157 -12.23551 -12.17232 -11.97025 -11.67717 -11.44688 -11.29568 -11.02900 -10.94273 -10.72801 -10.62546 -10.01324 -9.65384 -8.98443 -8.48916 -5.98838 1.33178 1.36010 1.44579 1.46443 1.73578 2.00841 2.25437 2.84989 2.93838 3.08947 3.16828 3.26658 3.62461 3.70812 3.74960 3.88172 3.96305 4.08288 4.10911 4.24419 4.26802 4.29481 4.39811 4.44104 4.45099 4.57110 4.63120 4.66644 4.67895 4.77309 4.83137 4.91195 4.92954 4.97817 4.99534 5.00152 5.10525 5.21364 5.28035 5.33934 5.35474 5.47714 5.50373 5.90533 6.04801 6.08300 6.17259 6.46903 6.56934 7.09600 7.16652 7.53418 8.09649 8.66066 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006902 B = 0.004063 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4056.072538 B = 6890.015774 C =10342.009307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.405 6.405 4 C 0.048 3.952 5 C 0.508 3.492 6 O -0.579 6.579 7 N -0.681 5.681 8 C 0.061 3.939 9 H 0.098 0.902 10 C -0.146 4.146 11 C -0.122 4.122 12 C -0.063 4.063 13 C 0.041 3.959 14 N -0.498 5.498 15 C 0.049 3.951 16 C 0.406 3.594 17 O -0.619 6.619 18 N -0.571 5.571 19 C -0.333 4.333 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.917 5.917 23 Si 0.986 3.014 24 H -0.272 1.272 25 H -0.266 1.266 26 H -0.277 1.277 27 C 0.043 3.957 28 C -0.068 4.068 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.415 0.585 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.067 0.933 48 H 0.026 0.974 49 H 0.093 0.907 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.077 -4.869 -19.741 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.324 6.324 4 C -0.031 4.031 5 C 0.295 3.705 6 O -0.458 6.458 7 N -0.333 5.333 8 C -0.045 4.045 9 H 0.116 0.884 10 C -0.185 4.185 11 C -0.124 4.124 12 C -0.101 4.101 13 C -0.087 4.087 14 N -0.220 5.220 15 C -0.083 4.083 16 C 0.194 3.806 17 O -0.507 6.507 18 N -0.208 5.208 19 C -0.463 4.463 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.558 5.558 23 Si 0.810 3.190 24 H -0.198 1.198 25 H -0.190 1.190 26 H -0.202 1.202 27 C -0.085 4.085 28 C -0.106 4.106 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.253 0.747 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.230 0.770 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.044 0.956 49 H 0.111 0.889 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.215 -4.102 -20.204 21.265 hybrid contribution -1.214 -0.799 1.598 2.160 sum 4.002 -4.901 -18.606 19.652 Atomic orbital electron populations 1.21787 0.93272 1.03583 1.02306 1.22805 0.96291 0.81909 1.01779 1.87987 1.19708 1.28954 1.95779 1.22296 0.83601 0.92161 1.05067 1.20956 0.82625 0.91776 0.75144 1.90688 1.50976 1.53585 1.50519 1.45084 1.06609 1.07639 1.74015 1.21641 0.92683 0.83235 1.06986 0.88423 1.23642 0.98883 1.04304 0.91636 1.21997 0.96481 0.97996 0.95879 1.21099 1.00073 0.96201 0.92732 1.22257 1.00174 0.90786 0.95480 1.62394 1.48528 1.07877 1.03208 1.22168 0.92851 1.03313 0.89984 1.22247 0.92493 0.83410 0.82499 1.90471 1.47159 1.59967 1.53109 1.42115 1.13172 1.57258 1.08239 1.19533 0.91294 1.41771 0.93699 0.91030 1.25942 1.02423 0.97282 0.95189 1.69654 1.33604 1.48527 1.03999 0.85104 0.77661 0.78619 0.77655 1.19773 1.19026 1.20247 1.22206 0.94869 0.94571 0.96847 1.21155 1.02973 0.94418 0.92027 0.93518 0.92222 0.88250 0.92385 0.90530 0.88828 0.86068 0.74653 0.86128 0.86774 0.90303 0.88866 0.91113 0.95068 0.87149 0.87545 0.77025 0.91217 0.91481 0.95580 0.88853 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 10.28 71.98 0.74 -2.06 16 2 C 0.05 0.93 6.66 71.98 0.48 1.41 16 3 O -0.40 -11.73 9.88 -129.94 -1.28 -13.01 16 4 C 0.05 1.10 6.42 71.24 0.46 1.56 16 5 C 0.51 15.85 7.91 87.66 0.69 16.54 16 6 O -0.58 -24.76 16.07 16.01 0.26 -24.50 16 7 N -0.68 -16.81 5.35 -442.85 -2.37 -19.18 16 8 C 0.06 1.59 6.10 44.92 0.27 1.87 16 9 H 0.10 3.31 7.40 -2.39 -0.02 3.29 16 10 C -0.15 -2.51 9.93 30.52 0.30 -2.21 16 11 C -0.12 -2.74 2.02 -52.20 -0.11 -2.85 16 12 C -0.06 -1.33 5.67 30.76 0.17 -1.16 16 13 C 0.04 1.24 4.96 86.41 0.43 1.67 16 14 N -0.50 -15.53 4.78 -900.18 -4.30 -19.83 16 15 C 0.05 1.67 5.82 85.56 0.50 2.16 16 16 C 0.41 19.05 7.19 87.66 0.63 19.68 16 17 O -0.62 -33.45 11.30 -3.06 -0.03 -33.48 16 18 N -0.57 -29.37 5.29 -306.99 -1.62 -31.00 16 19 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 20 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 21 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 22 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 23 Si 0.99 43.96 29.55 68.60 2.03 45.99 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 C 0.04 1.42 5.05 86.41 0.44 1.85 16 28 C -0.07 -1.66 5.87 30.76 0.18 -1.48 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.41 7.18 6.85 -92.71 -0.64 6.55 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 1.29 6.18 -2.39 -0.01 1.27 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 2.00 8.08 -2.39 -0.02 1.98 16 42 H 0.03 1.24 5.79 -2.39 -0.01 1.23 16 43 H 0.11 3.29 8.13 -2.38 -0.02 3.27 16 44 H 0.11 3.29 8.04 -2.39 -0.02 3.27 16 45 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 46 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 47 H 0.07 2.10 8.02 -2.38 -0.02 2.08 16 48 H 0.03 1.13 5.79 -2.39 -0.01 1.12 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 Total: -1.00 -80.60 400.92 -0.98 -81.58 By element: Atomic # 1 Polarization: 44.74 SS G_CDS: -0.41 Total: 44.33 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 6.47 Total: 18.63 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -8.01 Total: -119.54 kcal Atomic # 8 Polarization: -69.93 SS G_CDS: -1.06 Total: -70.99 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -80.60 -0.98 -81.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265321356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.966 kcal (2) G-P(sol) polarization free energy of solvation -80.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds