Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46803 * 2 1 4 4 C 1.42905 * 113.99819 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46951 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46946 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99980 * 0.27482 * 6 5 4 8 8 N 1.34778 * 119.99875 * 180.02562 * 6 5 4 9 9 C 1.47154 * 120.67874 * 179.97438 * 8 6 5 10 10 C 1.53896 * 108.04113 * 132.61298 * 9 8 6 11 11 H 1.08995 * 112.12225 * 182.65544 * 10 9 8 12 12 C 1.54549 * 107.80772 * 306.64758 * 10 9 8 13 13 C 1.54256 * 104.94310 * 88.96961 * 12 10 9 14 14 C 1.54546 * 104.93595 * 359.97438 * 13 12 10 15 15 H 1.09005 * 112.20572 * 146.47604 * 14 13 12 16 16 C 1.47155 * 120.68493 * 359.71577 * 8 6 5 17 17 N 1.48728 * 104.32489 * 24.74689 * 14 13 12 18 18 C 1.46904 * 111.00112 * 78.35669 * 17 14 13 19 19 C 1.50696 * 109.46996 * 62.03010 * 18 17 14 20 20 O 1.21293 * 120.00053 * 6.19772 * 19 18 17 21 21 N 1.34773 * 120.00013 * 186.19972 * 19 18 17 22 22 C 1.37106 * 119.99978 * 180.02562 * 21 19 18 23 23 H 1.07993 * 119.99612 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99541 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00458 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99632 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46907 * 89.99978 * 26 24 22 28 28 H 1.48499 * 109.47363 * 210.00028 * 26 24 22 29 29 H 1.48499 * 109.47436 * 330.00305 * 26 24 22 30 30 H 1.09002 * 109.47267 * 300.00042 * 1 2 3 31 31 H 1.08999 * 109.47200 * 60.00175 * 1 2 3 32 32 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46932 * 240.00161 * 2 1 3 34 34 H 1.08999 * 109.47200 * 119.99825 * 2 1 3 35 35 H 1.08998 * 109.46990 * 60.00169 * 4 3 2 36 36 H 1.08996 * 109.47065 * 299.99681 * 4 3 2 37 37 H 1.08998 * 109.47096 * 60.00283 * 5 4 3 38 38 H 1.08998 * 109.47511 * 299.99609 * 5 4 3 39 39 H 1.08998 * 109.74864 * 252.24363 * 9 8 6 40 40 H 1.08994 * 109.74775 * 12.92621 * 9 8 6 41 41 H 1.09004 * 110.34147 * 207.83736 * 12 10 9 42 42 H 1.08996 * 110.34928 * 329.99563 * 12 10 9 43 43 H 1.09004 * 110.34522 * 118.85987 * 13 12 10 44 44 H 1.08998 * 110.34416 * 241.12999 * 13 12 10 45 45 H 1.08998 * 109.74594 * 347.02744 * 16 8 6 46 46 H 1.08995 * 109.74075 * 107.75151 * 16 8 6 47 47 H 1.08997 * 109.46741 * 182.02779 * 18 17 14 48 48 H 1.08997 * 109.47219 * 302.02506 * 18 17 14 49 49 H 0.97004 * 119.99845 * 359.97438 * 21 19 18 50 50 H 0.96997 * 119.99995 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 5.3276 3.0575 -0.0001 7 8 6.0150 2.0584 -0.0047 8 7 5.9072 4.2743 -0.0002 9 6 7.3726 4.4079 0.0004 10 6 7.7577 5.4376 -1.0766 11 1 8.8378 5.5544 -1.1652 12 6 7.1069 4.9959 -2.4070 13 6 5.7143 5.6593 -2.4081 14 6 5.6455 6.4432 -1.0779 15 1 5.0647 7.3610 -1.1702 16 6 5.0876 5.4964 -0.0065 17 7 7.0677 6.7095 -0.7337 18 6 7.6005 7.8268 -1.5248 19 6 6.8267 9.0805 -1.2080 20 8 5.9972 9.0739 -0.3231 21 7 7.0565 10.2091 -1.9079 22 6 6.3528 11.3499 -1.6193 23 1 5.6143 11.3439 -0.8314 24 6 6.5901 12.5136 -2.3405 25 7 7.4885 12.5206 -3.2995 26 14 5.6310 14.0677 -1.9478 27 1 6.3597 14.8524 -0.9188 28 1 5.4839 14.8833 -3.1800 29 1 4.2870 13.7030 -1.4322 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8340 0.9765 -0.8892 36 1 3.8332 0.9768 0.8908 37 1 3.4221 3.4225 0.8894 38 1 3.4230 3.4215 -0.8906 39 1 7.7106 4.7531 0.9774 40 1 7.8302 3.4456 -0.2287 41 1 7.6961 5.3500 -3.2530 42 1 7.0115 3.9106 -2.4403 43 1 5.6192 6.3395 -3.2545 44 1 4.9329 4.9001 -2.4411 45 1 4.0532 5.2450 -0.2409 46 1 5.1379 5.9785 0.9698 47 1 8.6518 7.9768 -1.2793 48 1 7.5042 7.5988 -2.5863 49 1 7.7202 10.2145 -2.6153 50 1 7.6538 13.3329 -3.8032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267527884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -101.735557 kcal Electronic energy + Delta-G solvation = -30451.053111 eV Core-core repulsion = 26285.564835 eV Total energy + Delta-G solvation = -4165.488276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14575 -39.26138 -38.17608 -37.72476 -34.68183 -33.93297 -32.89004 -31.60587 -31.40525 -30.97142 -30.35551 -27.91958 -25.85149 -24.90615 -24.03105 -23.33350 -23.07986 -20.66823 -20.26566 -19.31777 -18.44323 -17.94414 -17.58774 -16.81330 -16.51579 -16.20007 -15.98667 -15.52540 -15.11679 -14.87119 -14.60277 -14.48612 -14.41005 -13.99043 -13.69003 -13.59240 -13.52336 -13.46644 -12.70674 -12.66729 -12.59107 -12.26833 -12.20605 -12.04945 -11.89197 -11.63055 -11.40116 -11.38679 -11.34442 -11.14163 -11.01713 -10.94089 -10.73758 -10.42691 -10.42154 -10.25730 -9.88834 -9.87825 -9.51515 -8.85654 -8.39287 -8.16302 -7.99923 -6.45786 -3.86797 2.51199 2.74486 3.14897 3.24111 3.29259 3.48832 3.85641 3.88447 4.17286 4.43182 4.61588 4.68736 4.70647 4.78561 4.80479 4.88559 4.93734 4.96579 5.06073 5.10749 5.19006 5.21580 5.26466 5.30847 5.39444 5.46170 5.52243 5.54295 5.56290 5.60510 5.63768 5.77268 5.78808 5.83100 5.84689 5.91274 5.94579 6.01430 6.14593 6.20867 6.28482 6.49278 6.89703 6.99880 7.12046 7.37243 7.51213 8.01720 8.04643 8.56520 9.13534 9.49723 10.00579 10.71750 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.002296 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.592935 B =12189.683629 C =13278.328940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.393 6.393 4 C 0.080 3.920 5 C -0.140 4.140 6 C 0.520 3.480 7 O -0.553 6.553 8 N -0.601 5.601 9 C 0.128 3.872 10 C 0.045 3.955 11 H 0.104 0.896 12 C -0.145 4.145 13 C -0.149 4.149 14 C 0.054 3.946 15 H 0.128 0.872 16 C 0.120 3.880 17 N -0.477 5.477 18 C 0.035 3.965 19 C 0.442 3.558 20 O -0.580 6.580 21 N -0.562 5.562 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.050 0.950 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -20.981 2.289 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.003 3.997 5 C -0.180 4.180 6 C 0.309 3.691 7 O -0.432 6.432 8 N -0.334 5.334 9 C 0.006 3.994 10 C -0.065 4.065 11 H 0.122 0.878 12 C -0.185 4.185 13 C -0.189 4.189 14 C -0.056 4.056 15 H 0.145 0.855 16 C -0.002 4.002 17 N -0.200 5.200 18 C -0.096 4.096 19 C 0.228 3.772 20 O -0.464 6.464 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.068 0.932 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.591 -21.009 3.339 21.995 hybrid contribution 0.188 0.620 -1.329 1.478 sum -5.404 -20.389 2.010 21.189 Atomic orbital electron populations 1.21752 0.93683 1.02228 1.03230 1.22442 0.95523 0.83605 1.00198 1.87821 1.21168 1.26703 1.95564 1.22096 0.80609 0.95431 1.01565 1.21510 0.92793 0.97984 1.05720 1.20310 0.90027 0.82838 0.75973 1.90679 1.65336 1.36077 1.51120 1.48144 1.07351 1.05734 1.72134 1.21782 0.79504 0.98976 0.99179 1.23497 0.99272 0.90398 0.93339 0.87779 1.22834 0.96415 1.00971 0.98239 1.22909 0.97187 0.99447 0.99308 1.23483 0.91690 0.98650 0.91738 0.85484 1.21950 0.93737 0.83798 1.00739 1.65110 1.02160 1.01534 1.51147 1.21976 0.99896 0.91580 0.96197 1.19689 0.87192 0.84623 0.85712 1.90501 1.37458 1.84726 1.33759 1.41889 1.36566 1.08874 1.32526 1.19690 1.18480 0.86902 1.17811 0.87869 1.25269 0.97229 0.99548 0.95881 1.69608 1.33166 1.29584 1.21826 0.85862 0.79872 0.80856 0.77722 1.20387 1.20952 1.19404 0.91787 0.91795 0.91123 0.93366 0.93352 0.92557 0.92504 0.87909 0.88014 0.90631 0.89063 0.91673 0.91304 0.91464 0.91599 0.89684 0.89800 0.89170 0.93179 0.77500 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.39 -4.12 10.34 -35.23 -0.36 -4.48 16 4 C 0.08 0.82 5.23 37.16 0.19 1.01 16 5 C -0.14 -1.39 4.45 -27.88 -0.12 -1.51 16 6 C 0.52 6.42 7.70 -10.98 -0.08 6.33 16 7 O -0.55 -8.36 15.44 5.56 0.09 -8.27 16 8 N -0.60 -7.28 2.25 -171.80 -0.39 -7.67 16 9 C 0.13 1.55 5.90 -3.22 -0.02 1.53 16 10 C 0.04 0.55 3.66 -65.43 -0.24 0.31 16 11 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 12 C -0.15 -1.72 5.52 -25.26 -0.14 -1.86 16 13 C -0.15 -1.89 5.53 -25.26 -0.14 -2.03 16 14 C 0.05 0.78 3.11 -65.64 -0.20 0.58 16 15 H 0.13 2.27 5.97 -51.93 -0.31 1.96 16 16 C 0.12 1.48 5.75 -3.44 -0.02 1.46 16 17 N -0.48 -7.31 4.76 -214.47 -1.02 -8.33 16 18 C 0.04 0.59 5.32 -4.98 -0.03 0.56 16 19 C 0.44 9.85 7.22 -10.99 -0.08 9.77 16 20 O -0.58 -14.61 14.11 5.55 0.08 -14.53 16 21 N -0.56 -13.69 5.29 -10.97 -0.06 -13.75 16 22 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 23 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 26 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 38 H 0.10 0.92 7.58 -51.93 -0.39 0.52 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.10 7.10 -51.93 -0.37 0.73 16 41 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 42 H 0.07 0.82 7.84 -51.93 -0.41 0.42 16 43 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 44 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 45 H 0.08 0.85 6.08 -51.93 -0.32 0.54 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.05 0.78 7.00 -51.93 -0.36 0.42 16 49 H 0.39 9.21 7.90 -40.82 -0.32 8.88 16 50 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -31.25 394.10 -8.82 -40.08 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -8.30 Total: 10.16 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -0.49 Total: 8.54 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.74 Total: -53.02 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.20 Total: -27.28 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.25 -8.82 -40.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267527884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.659 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds