Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00187 * 2 1 4 4 N 1.34783 * 120.00064 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63385 * 180.02562 * 4 2 1 6 6 C 1.53186 * 108.77564 * 233.58469 * 5 4 2 7 7 C 1.53033 * 109.31446 * 305.36613 * 6 5 4 8 8 C 1.50700 * 109.46076 * 181.38395 * 7 6 5 9 9 O 1.21280 * 120.00334 * 359.97421 * 8 7 6 10 10 N 1.34775 * 120.00106 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46910 * 180.02562 * 11 10 8 13 13 O 1.42894 * 110.78149 * 61.76179 * 12 11 10 14 14 C 1.55164 * 110.71971 * 185.00159 * 12 11 10 15 15 C 1.54909 * 101.58094 * 153.86263 * 14 12 11 16 16 N 1.47415 * 104.83420 * 322.99222 * 15 14 12 17 17 C 1.36942 * 125.64705 * 204.09149 * 16 15 14 18 18 H 1.07995 * 120.00118 * 6.64958 * 17 16 15 19 19 C 1.38811 * 120.00079 * 186.64578 * 17 16 15 20 20 N 1.31624 * 119.99877 * 7.37948 * 19 17 16 21 21 Si 1.86797 * 120.00410 * 187.37534 * 19 17 16 22 22 H 1.48501 * 109.47081 * 84.98661 * 21 19 17 23 23 H 1.48491 * 109.47599 * 204.99000 * 21 19 17 24 24 H 1.48499 * 109.46887 * 324.99289 * 21 19 17 25 25 C 1.47021 * 108.70683 * 24.35404 * 16 15 14 26 26 C 1.53043 * 109.52983 * 61.37107 * 7 6 5 27 27 C 1.46924 * 120.62836 * 359.97438 * 4 2 1 28 28 H 1.08999 * 109.47355 * 240.00640 * 1 2 3 29 29 H 1.09005 * 109.46951 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46926 * 120.00207 * 1 2 3 31 31 H 1.09000 * 109.58763 * 113.79282 * 5 4 2 32 32 H 1.09002 * 109.58483 * 353.37539 * 5 4 2 33 33 H 1.08998 * 109.49888 * 185.41085 * 6 5 4 34 34 H 1.09007 * 109.49724 * 65.32042 * 6 5 4 35 35 H 1.09003 * 109.45587 * 301.35592 * 7 6 5 36 36 H 0.97005 * 119.99900 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46806 * 60.01002 * 11 10 8 38 38 H 1.08998 * 109.47401 * 300.00437 * 11 10 8 39 39 H 0.96701 * 114.00313 * 303.23611 * 13 12 11 40 40 H 1.09004 * 111.00265 * 35.79061 * 14 12 11 41 41 H 1.09001 * 111.00415 * 271.94323 * 14 12 11 42 42 H 1.09005 * 110.36239 * 204.14798 * 15 14 12 43 43 H 1.09001 * 110.36437 * 81.83246 * 15 14 12 44 44 H 0.97004 * 119.99892 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.88440 * 118.12975 * 25 16 15 46 46 H 1.08997 * 109.88761 * 239.30090 * 25 16 15 47 47 H 1.08997 * 109.49582 * 58.57426 * 26 7 6 48 48 H 1.08993 * 109.49594 * 178.68096 * 26 7 6 49 49 H 1.08994 * 109.58916 * 246.20443 * 27 4 2 50 50 H 1.09012 * 109.58587 * 6.63211 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6500 -1.1835 0.0011 6 6 4.1340 -2.0501 -1.1657 7 6 3.4901 -3.4350 -1.0686 8 6 3.9902 -4.3013 -2.1958 9 8 4.7830 -3.8551 -2.9978 10 7 3.5565 -5.5720 -2.3126 11 6 4.0423 -6.4140 -3.4086 12 6 3.3988 -7.7987 -3.3117 13 8 1.9785 -7.7078 -3.4403 14 6 3.9870 -8.7537 -4.3839 15 6 3.7717 -10.1367 -3.7202 16 7 4.0175 -9.9088 -2.2846 17 6 4.3993 -10.8624 -1.3790 18 1 4.6490 -11.8577 -1.7158 19 6 4.4654 -10.5499 -0.0282 20 7 4.0242 -9.3862 0.4004 21 14 5.1805 -11.7806 1.1815 22 1 6.6578 -11.6348 1.2209 23 1 4.6219 -11.5274 2.5338 24 1 4.8304 -13.1581 0.7512 25 6 3.7787 -8.4894 -1.9849 26 6 1.9687 -3.2998 -1.1660 27 6 1.4603 -2.4476 0.0017 28 1 -0.3634 -0.5137 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 4.0105 -1.6016 0.9410 32 1 4.0267 -0.1675 -0.1175 33 1 5.2185 -2.1491 -1.1200 34 1 3.8504 -1.5822 -2.1085 35 1 3.7538 -3.8920 -0.1148 36 1 2.9222 -5.9289 -1.6713 37 1 5.1257 -6.5109 -3.3395 38 1 3.7784 -5.9570 -4.3624 39 1 1.5616 -7.1228 -2.7930 40 1 5.0474 -8.5573 -4.5424 41 1 3.4333 -8.6789 -5.3198 42 1 4.4823 -10.8623 -4.1163 43 1 2.7494 -10.4793 -3.8803 44 1 4.0701 -9.1679 1.3444 45 1 2.9630 -8.3940 -1.2682 46 1 4.6848 -8.0383 -1.5806 47 1 1.7057 -2.8201 -2.1086 48 1 1.5121 -4.2884 -1.1203 49 1 1.6425 -2.9687 0.9415 50 1 0.3920 -2.2658 -0.1167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271219188.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -101.179179 kcal Electronic energy + Delta-G solvation = -30723.567748 eV Core-core repulsion = 26558.103598 eV Total energy + Delta-G solvation = -4165.464150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.70471 -39.73547 -38.55132 -37.17283 -35.15039 -34.09821 -33.37275 -32.28841 -31.79475 -29.77764 -29.54723 -28.08872 -26.46798 -25.40266 -23.67012 -23.48352 -21.84503 -20.64938 -19.97991 -19.86427 -19.27593 -17.91000 -17.16213 -16.80015 -16.41747 -16.14286 -15.77850 -15.64842 -15.21585 -14.80113 -14.40369 -14.22757 -14.07473 -13.95352 -13.86719 -13.57256 -13.49916 -13.01117 -12.96031 -12.88334 -12.52740 -12.45032 -12.27631 -12.13316 -11.95427 -11.68709 -11.57056 -11.26488 -11.03927 -10.95364 -10.88767 -10.67634 -10.53007 -10.35200 -10.10019 -10.07578 -9.84633 -9.68091 -9.34955 -8.98543 -8.93200 -8.72374 -6.91633 -5.81701 -3.15075 2.34572 2.65827 2.72070 3.21685 3.34632 3.40204 3.40852 4.20836 4.34576 4.40595 4.44696 4.51358 4.56779 4.74201 4.86195 4.91609 4.97044 5.01490 5.03955 5.14540 5.23792 5.26632 5.37508 5.39628 5.43361 5.44751 5.49141 5.57218 5.57939 5.71964 5.79155 5.85224 5.94127 6.06014 6.09753 6.22425 6.24484 6.38823 6.50265 6.59623 6.85819 7.08873 7.16587 7.41645 7.54481 7.64580 7.88080 8.00490 8.14531 8.27758 9.10934 9.72349 10.38232 11.29610 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.002686 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.256686 B =10422.602776 C =11380.536047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.550 6.550 4 N -0.614 5.614 5 C 0.109 3.891 6 C -0.112 4.112 7 C -0.108 4.108 8 C 0.519 3.481 9 O -0.544 6.544 10 N -0.721 5.721 11 C 0.108 3.892 12 C 0.087 3.913 13 O -0.549 6.549 14 C -0.115 4.115 15 C 0.135 3.865 16 N -0.602 5.602 17 C -0.225 4.225 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.160 3.840 26 C -0.127 4.127 27 C 0.107 3.893 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.402 0.598 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.366 0.634 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.025 0.975 44 H 0.251 0.749 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 14.219 -1.692 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.301 3.699 3 O -0.428 6.428 4 N -0.348 5.348 5 C -0.013 4.013 6 C -0.150 4.150 7 C -0.130 4.130 8 C 0.305 3.695 9 O -0.421 6.421 10 N -0.373 5.373 11 C -0.016 4.016 12 C 0.045 3.955 13 O -0.354 6.354 14 C -0.154 4.154 15 C 0.009 3.991 16 N -0.329 5.329 17 C -0.353 4.353 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.034 3.966 26 C -0.166 4.166 27 C -0.016 4.016 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.237 0.763 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.213 0.787 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.096 0.904 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.638 14.636 -2.542 16.271 hybrid contribution 0.010 -0.668 1.510 1.652 sum -6.628 13.968 -1.032 15.495 Atomic orbital electron populations 1.21952 0.91805 1.05441 1.04223 1.20830 0.90675 0.82998 0.75355 1.90712 1.70816 1.31095 1.50139 1.48208 1.07153 1.06069 1.73411 1.21671 0.79139 1.02068 0.98408 1.21716 1.01280 0.93019 0.99030 1.21339 0.96424 0.96395 0.98826 1.20486 0.81029 0.81947 0.86050 1.90692 1.34402 1.73422 1.43625 1.45960 1.47640 1.12478 1.31174 1.21962 0.99813 0.90202 0.89624 1.22903 0.80538 0.92310 0.99718 1.86537 1.19407 1.70405 1.59019 1.22705 1.00016 0.95905 0.96757 1.21560 0.97886 0.93854 0.85752 1.44385 1.80419 1.05008 1.03042 1.19083 1.37394 0.92036 0.86829 0.90333 1.24778 1.01485 0.97567 0.96704 1.69892 1.51427 1.21925 1.13956 0.86111 0.78767 0.80282 0.80466 1.21589 1.21700 1.20716 1.21801 1.00301 0.84309 0.90151 1.21943 0.93883 1.01193 0.99565 1.21817 0.96951 0.83788 0.99002 0.89287 0.89065 0.89277 0.91161 0.88660 0.89704 0.90779 0.87843 0.76287 0.90580 0.91295 0.78741 0.90256 0.90908 0.94036 0.95743 0.93839 0.91850 0.94322 0.90697 0.89633 0.90437 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 8.67 36.00 0.31 -0.71 16 2 C 0.51 5.17 7.81 -10.99 -0.09 5.09 16 3 O -0.55 -7.95 16.50 5.56 0.09 -7.86 16 4 N -0.61 -5.37 2.97 -172.75 -0.51 -5.88 16 5 C 0.11 1.03 6.43 -3.72 -0.02 1.01 16 6 C -0.11 -1.15 4.65 -26.62 -0.12 -1.27 16 7 C -0.11 -1.06 2.49 -91.73 -0.23 -1.29 16 8 C 0.52 6.99 7.15 -10.99 -0.08 6.91 16 9 O -0.54 -9.37 15.98 5.56 0.09 -9.29 16 10 N -0.72 -9.45 5.01 -60.29 -0.30 -9.75 16 11 C 0.11 1.64 4.74 -4.04 -0.02 1.62 16 12 C 0.09 1.47 0.93 -88.77 -0.08 1.39 16 13 O -0.55 -8.87 13.10 -35.23 -0.46 -9.33 16 14 C -0.12 -1.95 6.26 -24.58 -0.15 -2.10 16 15 C 0.14 2.76 7.22 -2.53 -0.02 2.74 16 16 N -0.60 -14.78 3.39 -170.07 -0.58 -15.35 16 17 C -0.23 -6.08 10.26 -15.06 -0.15 -6.23 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 19 C -0.01 -0.25 5.45 -17.43 -0.09 -0.35 16 20 N -0.92 -25.31 10.48 55.49 0.58 -24.73 16 21 Si 0.91 21.43 29.56 -169.99 -5.02 16.40 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.16 3.49 4.22 -3.06 -0.01 3.48 16 26 C -0.13 -0.92 5.27 -26.59 -0.14 -1.06 16 27 C 0.11 0.65 6.34 -3.69 -0.02 0.63 16 28 H 0.09 0.35 7.94 -51.93 -0.41 -0.06 16 29 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.09 0.38 7.69 -51.93 -0.40 -0.02 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.03 7.01 -51.93 -0.36 0.67 16 33 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.07 0.87 8.13 -51.92 -0.42 0.45 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 4.69 6.77 -40.82 -0.28 4.42 16 37 H 0.08 1.27 8.13 -51.93 -0.42 0.84 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.37 4.60 8.06 45.56 0.37 4.96 16 40 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 45 H 0.06 1.52 6.92 -51.93 -0.36 1.16 16 46 H 0.04 0.94 7.59 -51.93 -0.39 0.55 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.51 7.52 -51.93 -0.39 0.12 16 49 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 0.36 5.93 -51.92 -0.31 0.05 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -35.02 393.41 -8.68 -43.70 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.57 Total: 6.32 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -0.93 Total: 9.84 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.81 Total: -55.72 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.28 Total: -26.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.02 -8.68 -43.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271219188.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.479 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds