Wall clock time and date at job start Sat Apr 11 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 120.00187 * 2 1 4 4 N 1.34783 * 120.00064 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63385 * 180.02562 * 4 2 1 6 6 C 1.53186 * 108.77564 * 233.58469 * 5 4 2 7 7 C 1.53033 * 109.31446 * 305.36613 * 6 5 4 8 8 C 1.50700 * 109.46076 * 181.38395 * 7 6 5 9 9 O 1.21280 * 120.00334 * 359.97421 * 8 7 6 10 10 N 1.34775 * 120.00106 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46910 * 180.02562 * 11 10 8 13 13 O 1.42894 * 110.78149 * 61.76179 * 12 11 10 14 14 C 1.55164 * 110.71971 * 185.00159 * 12 11 10 15 15 C 1.54909 * 101.58094 * 153.86263 * 14 12 11 16 16 N 1.47415 * 104.83420 * 322.99222 * 15 14 12 17 17 C 1.36942 * 125.64705 * 204.09149 * 16 15 14 18 18 H 1.07995 * 120.00118 * 6.64958 * 17 16 15 19 19 C 1.38811 * 120.00079 * 186.64578 * 17 16 15 20 20 N 1.31624 * 119.99877 * 7.37948 * 19 17 16 21 21 Si 1.86797 * 120.00410 * 187.37534 * 19 17 16 22 22 H 1.48501 * 109.47081 * 84.98661 * 21 19 17 23 23 H 1.48491 * 109.47599 * 204.99000 * 21 19 17 24 24 H 1.48499 * 109.46887 * 324.99289 * 21 19 17 25 25 C 1.47021 * 108.70683 * 24.35404 * 16 15 14 26 26 C 1.53043 * 109.52983 * 61.37107 * 7 6 5 27 27 C 1.46924 * 120.62836 * 359.97438 * 4 2 1 28 28 H 1.08999 * 109.47355 * 240.00640 * 1 2 3 29 29 H 1.09005 * 109.46951 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46926 * 120.00207 * 1 2 3 31 31 H 1.09000 * 109.58763 * 113.79282 * 5 4 2 32 32 H 1.09002 * 109.58483 * 353.37539 * 5 4 2 33 33 H 1.08998 * 109.49888 * 185.41085 * 6 5 4 34 34 H 1.09007 * 109.49724 * 65.32042 * 6 5 4 35 35 H 1.09003 * 109.45587 * 301.35592 * 7 6 5 36 36 H 0.97005 * 119.99900 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46806 * 60.01002 * 11 10 8 38 38 H 1.08998 * 109.47401 * 300.00437 * 11 10 8 39 39 H 0.96701 * 114.00313 * 303.23611 * 13 12 11 40 40 H 1.09004 * 111.00265 * 35.79061 * 14 12 11 41 41 H 1.09001 * 111.00415 * 271.94323 * 14 12 11 42 42 H 1.09005 * 110.36239 * 204.14798 * 15 14 12 43 43 H 1.09001 * 110.36437 * 81.83246 * 15 14 12 44 44 H 0.97004 * 119.99892 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.88440 * 118.12975 * 25 16 15 46 46 H 1.08997 * 109.88761 * 239.30090 * 25 16 15 47 47 H 1.08997 * 109.49582 * 58.57426 * 26 7 6 48 48 H 1.08993 * 109.49594 * 178.68096 * 26 7 6 49 49 H 1.08994 * 109.58916 * 246.20443 * 27 4 2 50 50 H 1.09012 * 109.58587 * 6.63211 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6500 -1.1835 0.0011 6 6 4.1340 -2.0501 -1.1657 7 6 3.4901 -3.4350 -1.0686 8 6 3.9902 -4.3013 -2.1958 9 8 4.7830 -3.8551 -2.9978 10 7 3.5565 -5.5720 -2.3126 11 6 4.0423 -6.4140 -3.4086 12 6 3.3988 -7.7987 -3.3117 13 8 1.9785 -7.7078 -3.4403 14 6 3.9870 -8.7537 -4.3839 15 6 3.7717 -10.1367 -3.7202 16 7 4.0175 -9.9088 -2.2846 17 6 4.3993 -10.8624 -1.3790 18 1 4.6490 -11.8577 -1.7158 19 6 4.4654 -10.5499 -0.0282 20 7 4.0242 -9.3862 0.4004 21 14 5.1805 -11.7806 1.1815 22 1 6.6578 -11.6348 1.2209 23 1 4.6219 -11.5274 2.5338 24 1 4.8304 -13.1581 0.7512 25 6 3.7787 -8.4894 -1.9849 26 6 1.9687 -3.2998 -1.1660 27 6 1.4603 -2.4476 0.0017 28 1 -0.3634 -0.5137 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 4.0105 -1.6016 0.9410 32 1 4.0267 -0.1675 -0.1175 33 1 5.2185 -2.1491 -1.1200 34 1 3.8504 -1.5822 -2.1085 35 1 3.7538 -3.8920 -0.1148 36 1 2.9222 -5.9289 -1.6713 37 1 5.1257 -6.5109 -3.3395 38 1 3.7784 -5.9570 -4.3624 39 1 1.5616 -7.1228 -2.7930 40 1 5.0474 -8.5573 -4.5424 41 1 3.4333 -8.6789 -5.3198 42 1 4.4823 -10.8623 -4.1163 43 1 2.7494 -10.4793 -3.8803 44 1 4.0701 -9.1679 1.3444 45 1 2.9630 -8.3940 -1.2682 46 1 4.6848 -8.0383 -1.5806 47 1 1.7057 -2.8201 -2.1086 48 1 1.5121 -4.2884 -1.1203 49 1 1.6425 -2.9687 0.9415 50 1 0.3920 -2.2658 -0.1167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271219188.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:43 Heat of formation + Delta-G solvation = -127.969571 kcal Electronic energy + Delta-G solvation = -30724.729466 eV Core-core repulsion = 26558.103598 eV Total energy + Delta-G solvation = -4166.625868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.59912 -40.77906 -39.89937 -38.05873 -36.73263 -35.31461 -34.23211 -34.07178 -32.51046 -31.18559 -30.31340 -29.60180 -27.82309 -26.68025 -25.11981 -24.19411 -22.83285 -22.08963 -21.33118 -21.10182 -20.01973 -19.11815 -18.61625 -17.96314 -17.68087 -17.02608 -16.77878 -16.54099 -16.34135 -16.27690 -15.82181 -15.57893 -15.16721 -15.04879 -14.98442 -14.65766 -14.40941 -14.26992 -14.00869 -13.93820 -13.59992 -13.47656 -13.32862 -13.10375 -13.02632 -12.97182 -12.83774 -12.73927 -12.35155 -12.24146 -12.10922 -11.93635 -11.81659 -11.77705 -11.75381 -11.62928 -10.93019 -10.87660 -10.75936 -10.68011 -10.13909 -9.70322 -8.86660 -7.84206 -5.19448 1.47777 1.49137 1.56356 1.59528 1.62677 2.02357 2.16274 2.50036 3.20859 3.33616 3.44095 3.51043 3.68080 3.71396 3.82506 3.90730 3.92286 3.98603 4.05596 4.26126 4.29650 4.41841 4.47067 4.51569 4.54245 4.60951 4.66343 4.71900 4.75433 4.79955 4.82265 4.83413 4.93406 4.97345 5.02817 5.09326 5.14770 5.25708 5.31769 5.35638 5.38623 5.52536 5.54669 5.69897 6.20860 6.42320 6.47573 6.81026 7.11520 7.15760 7.19729 7.77223 8.42244 9.24556 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.002686 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.256686 B =10422.602776 C =11380.536047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.605 6.605 4 N -0.613 5.613 5 C 0.113 3.887 6 C -0.104 4.104 7 C -0.102 4.102 8 C 0.517 3.483 9 O -0.585 6.585 10 N -0.714 5.714 11 C 0.119 3.881 12 C 0.107 3.893 13 O -0.552 6.552 14 C -0.108 4.108 15 C 0.129 3.871 16 N -0.626 5.626 17 C -0.245 4.245 18 H 0.077 0.923 19 C -0.059 4.059 20 N -0.940 5.940 21 Si 0.973 3.027 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.171 3.829 26 C -0.123 4.123 27 C 0.106 3.894 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.116 0.884 36 H 0.411 0.589 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.383 0.617 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.020 0.980 44 H 0.248 0.752 45 H 0.040 0.960 46 H 0.007 0.993 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 13.673 -1.548 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.293 3.707 3 O -0.487 6.487 4 N -0.346 5.346 5 C -0.010 4.010 6 C -0.143 4.143 7 C -0.123 4.123 8 C 0.305 3.695 9 O -0.465 6.465 10 N -0.366 5.366 11 C -0.006 4.006 12 C 0.065 3.935 13 O -0.359 6.359 14 C -0.147 4.147 15 C 0.004 3.996 16 N -0.352 5.352 17 C -0.374 4.374 18 H 0.095 0.905 19 C -0.253 4.253 20 N -0.589 5.589 21 Si 0.802 3.198 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.199 1.199 25 C 0.046 3.954 26 C -0.161 4.161 27 C -0.016 4.016 28 H 0.133 0.867 29 H 0.105 0.895 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.247 0.753 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.025 0.975 47 H 0.087 0.913 48 H 0.124 0.876 49 H 0.111 0.889 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.468 14.050 -2.403 16.579 hybrid contribution 0.570 -0.560 1.439 1.646 sum -7.898 13.490 -0.964 15.662 Atomic orbital electron populations 1.21980 0.88193 1.06028 1.06437 1.21677 0.92452 0.82374 0.74163 1.90686 1.72196 1.33058 1.52796 1.48348 1.06796 1.07019 1.72426 1.21547 0.80206 1.00748 0.98522 1.21593 1.00655 0.93549 0.98479 1.21357 0.98378 0.94960 0.97590 1.21120 0.80136 0.81951 0.86272 1.90676 1.36259 1.74172 1.45423 1.45893 1.47568 1.12264 1.30853 1.21725 0.98632 0.89460 0.90769 1.22534 0.81266 0.92766 0.96907 1.86510 1.18627 1.71151 1.59612 1.22705 1.01143 0.93423 0.97398 1.21717 0.97632 0.96206 0.84063 1.44715 1.80319 1.05674 1.04513 1.19396 1.37517 0.92746 0.87782 0.90477 1.25520 1.02211 0.99380 0.98177 1.70057 1.51980 1.23010 1.13846 0.85179 0.77696 0.78712 0.78225 1.21683 1.21765 1.19901 1.21589 0.97922 0.83595 0.92296 1.21968 0.91569 1.02615 0.99963 1.22076 0.98284 0.82156 0.99040 0.86668 0.89494 0.87079 0.89725 0.90670 0.90951 0.92707 0.86569 0.75263 0.92297 0.90248 0.76812 0.89344 0.88238 0.93447 0.96231 0.94239 0.94197 0.97476 0.91294 0.87575 0.88937 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.67 71.23 0.62 -0.88 16 2 C 0.50 9.63 7.81 87.65 0.68 10.31 16 3 O -0.61 -17.94 16.50 -3.03 -0.05 -17.99 16 4 N -0.61 -9.78 2.97 -818.83 -2.43 -12.21 16 5 C 0.11 2.11 6.43 86.36 0.56 2.66 16 6 C -0.10 -2.16 4.65 30.67 0.14 -2.02 16 7 C -0.10 -1.86 2.49 -11.51 -0.03 -1.89 16 8 C 0.52 13.60 7.15 87.66 0.63 14.22 16 9 O -0.59 -20.32 15.98 -3.03 -0.05 -20.37 16 10 N -0.71 -17.89 5.01 -463.06 -2.32 -20.21 16 11 C 0.12 3.47 4.74 86.38 0.41 3.88 16 12 C 0.11 3.48 0.93 -9.60 -0.01 3.48 16 13 O -0.55 -16.52 13.10 -148.98 -1.95 -18.47 16 14 C -0.11 -3.45 6.26 31.99 0.20 -3.25 16 15 C 0.13 5.12 7.22 86.86 0.63 5.75 16 16 N -0.63 -30.73 3.39 -691.98 -2.35 -33.08 16 17 C -0.25 -13.31 10.26 84.03 0.86 -12.45 16 18 H 0.08 4.06 7.84 -2.91 -0.02 4.04 16 19 C -0.06 -3.20 5.45 84.86 0.46 -2.73 16 20 N -0.94 -51.81 10.48 21.65 0.23 -51.58 16 21 Si 0.97 43.99 29.56 68.60 2.03 46.02 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.17 7.49 4.22 86.73 0.37 7.86 16 26 C -0.12 -1.44 5.27 30.69 0.16 -1.28 16 27 C 0.11 0.93 6.34 86.38 0.55 1.48 16 28 H 0.11 0.45 7.94 -2.39 -0.02 0.43 16 29 H 0.09 0.89 8.12 -2.38 -0.02 0.87 16 30 H 0.11 0.53 7.69 -2.39 -0.02 0.51 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.73 7.01 -2.39 -0.02 1.71 16 33 H 0.07 1.66 8.07 -2.39 -0.02 1.64 16 34 H 0.05 1.34 8.13 -2.38 -0.02 1.32 16 35 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.41 8.91 6.77 -92.70 -0.63 8.28 16 37 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.38 8.60 8.06 -74.06 -0.60 8.00 16 40 H 0.09 2.67 8.04 -2.39 -0.02 2.65 16 41 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 45 H 0.04 1.92 6.92 -2.39 -0.02 1.90 16 46 H 0.01 0.35 7.59 -2.39 -0.02 0.33 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.11 0.86 7.52 -2.39 -0.02 0.84 16 49 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.12 0.38 5.93 -2.38 -0.01 0.36 16 Total: -1.00 -78.30 393.41 -0.94 -79.24 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.27 Total: 23.53 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: 6.23 Total: 25.13 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -6.88 Total: -117.08 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -2.05 Total: -56.84 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -78.30 -0.94 -79.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271219188.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.729 kcal (2) G-P(sol) polarization free energy of solvation -78.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds