Wall clock time and date at job start Sat Apr 11 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47246 * 2 1 4 4 C 1.34773 * 119.99885 * 180.02562 * 3 2 1 5 5 O 1.21582 * 120.00482 * 4.99062 * 4 3 2 6 6 N 1.34782 * 120.00042 * 184.99370 * 4 3 2 7 7 C 1.50206 * 120.86343 * 354.79071 * 6 4 3 8 8 C 1.46931 * 106.99806 * 112.29953 * 7 6 4 9 9 O 1.42201 * 114.54960 * 57.24713 * 8 7 6 10 10 C 1.39968 * 107.68177 * 267.54881 * 9 8 7 11 11 C 1.54161 * 110.33328 * 100.52733 * 10 9 8 12 12 C 1.53247 * 110.84886 * 199.19000 * 11 10 9 13 13 C 1.51586 * 103.89341 * 264.39249 * 12 11 10 14 14 O 1.21279 * 124.94853 * 164.89549 * 13 12 11 15 15 N 1.34592 * 110.10137 * 344.87130 * 13 12 11 16 16 C 1.46494 * 124.34906 * 179.70122 * 15 13 12 17 17 C 1.53001 * 109.46984 * 89.97583 * 16 15 13 18 18 C 1.50701 * 109.47098 * 179.97438 * 17 16 15 19 19 H 1.08008 * 120.00051 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00427 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99659 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00502 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46681 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.46991 * 119.99867 * 22 20 18 25 25 H 1.48498 * 109.46918 * 240.00082 * 22 20 18 26 26 C 1.47098 * 111.29991 * 359.68217 * 15 13 12 27 27 C 1.43758 * 120.86873 * 174.81652 * 6 4 3 28 28 H 1.08997 * 109.47130 * 59.99504 * 1 2 3 29 29 H 1.08997 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46751 * 299.99756 * 1 2 3 31 31 H 1.09003 * 109.47234 * 240.00335 * 2 1 3 32 32 H 1.08999 * 109.47646 * 120.00465 * 2 1 3 33 33 H 0.96999 * 120.00318 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.94434 * 352.92860 * 7 6 4 35 35 H 1.08997 * 109.94986 * 231.67904 * 7 6 4 36 36 H 1.09002 * 108.46558 * 178.55755 * 8 7 6 37 37 H 1.08998 * 108.47097 * 295.93354 * 8 7 6 38 38 H 1.08999 * 109.33378 * 340.26208 * 10 9 8 39 39 H 1.09007 * 109.18691 * 220.69736 * 10 9 8 40 40 H 1.09006 * 110.53577 * 22.99139 * 12 11 10 41 41 H 1.09000 * 110.54488 * 145.64025 * 12 11 10 42 42 H 1.08998 * 109.47363 * 209.97354 * 16 15 13 43 43 H 1.09002 * 109.47264 * 329.97728 * 16 15 13 44 44 H 1.08997 * 109.47342 * 299.99800 * 17 16 15 45 45 H 1.09003 * 109.47426 * 60.00311 * 17 16 15 46 46 H 0.96996 * 119.99956 * 180.02562 * 21 20 18 47 47 H 1.09000 * 110.29544 * 256.81300 * 26 15 13 48 48 H 1.08998 * 110.30138 * 134.67118 * 26 15 13 49 49 H 1.09005 * 108.16578 * 30.21837 * 27 6 4 50 50 H 1.09001 * 108.16916 * 146.81270 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1328 0.7073 -0.0926 6 7 3.7936 2.8938 0.1011 7 6 2.8390 4.0535 0.0990 8 6 2.8858 4.6508 1.4406 9 8 4.1791 5.0731 1.8545 10 6 4.7679 4.0144 2.5555 11 6 5.7602 3.2583 1.6499 12 6 6.0489 1.8596 2.2056 13 6 7.3252 2.0412 3.0031 14 8 7.7568 1.2486 3.8133 15 7 7.9098 3.2098 2.6807 16 6 9.1577 3.7003 3.2708 17 6 10.3434 3.2083 2.4385 18 6 11.6271 3.7135 3.0452 19 1 11.5999 4.3247 3.9353 20 6 12.8363 3.3963 2.4636 21 7 12.8694 2.6532 1.3789 22 14 14.4275 4.0218 3.2161 23 1 14.1199 4.8297 4.4236 24 1 15.2817 2.8684 3.5972 25 1 15.1456 4.8639 2.2261 26 6 7.1350 3.9310 1.6592 27 6 5.1999 3.1699 0.2137 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3881 2.1186 0.0004 34 1 1.8295 3.7037 -0.1173 35 1 3.1468 4.7873 -0.6458 36 1 2.2191 5.5129 1.4581 37 1 2.5158 3.9182 2.1579 38 1 3.9909 3.3277 2.8915 39 1 5.2990 4.4096 3.4215 40 1 5.2366 1.5303 2.8535 41 1 6.2008 1.1490 1.3931 42 1 9.1499 4.7902 3.2833 43 1 9.2492 3.3259 4.2904 44 1 10.3513 2.1185 2.4260 45 1 10.2520 3.5828 1.4189 46 1 13.7200 2.4297 0.9699 47 1 7.6112 3.8321 0.6837 48 1 7.0396 4.9826 1.9295 49 1 5.7434 2.3871 -0.3156 50 1 5.4019 4.1158 -0.2888 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273625814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:54 Heat of formation + Delta-G solvation = -117.637457 kcal Electronic energy + Delta-G solvation = -31195.679953 eV Core-core repulsion = 27029.502119 eV Total energy + Delta-G solvation = -4166.177834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35586 -41.07572 -39.85082 -37.69949 -36.60453 -36.19632 -35.96570 -34.46902 -32.00657 -31.35461 -30.46667 -29.06126 -27.46507 -27.25495 -25.81631 -24.06055 -23.53227 -23.24686 -21.63070 -20.51264 -20.40408 -19.40987 -18.70454 -18.20251 -17.56562 -17.26861 -16.95660 -16.72882 -16.55972 -16.42443 -16.15334 -15.85243 -15.41742 -15.22039 -14.97146 -14.74832 -14.63842 -14.42306 -14.31482 -14.14930 -13.91761 -13.57996 -13.39773 -13.20658 -12.90073 -12.84010 -12.71865 -12.57945 -12.50536 -12.34880 -12.31814 -12.07478 -11.95645 -11.84584 -11.81733 -11.41289 -11.28554 -10.84177 -10.63392 -10.61540 -10.21603 -9.63438 -9.55313 -8.24451 -6.37696 1.38104 1.40268 1.51547 1.54248 1.54932 2.07466 2.13384 2.40724 2.80731 2.96565 3.09018 3.25162 3.40991 3.52754 3.80853 4.05871 4.11337 4.21762 4.24553 4.26825 4.27474 4.35216 4.39642 4.41156 4.45782 4.56336 4.57756 4.66078 4.68034 4.71056 4.82406 4.83915 4.87644 4.92373 4.96531 5.06932 5.10636 5.28061 5.29931 5.43428 5.46732 5.54347 5.57121 5.80183 5.92578 6.11395 6.13564 6.22125 6.78113 6.94212 7.13948 7.32282 7.57243 8.88249 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019854 B = 0.002535 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.980227 B =11042.568245 C =11564.833946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.128 3.872 3 N -0.732 5.732 4 C 0.698 3.302 5 O -0.630 6.630 6 N -0.623 5.623 7 C 0.084 3.916 8 C 0.020 3.980 9 O -0.350 6.350 10 C 0.079 3.921 11 C -0.101 4.101 12 C -0.120 4.120 13 C 0.498 3.502 14 O -0.591 6.591 15 N -0.613 5.613 16 C 0.143 3.857 17 C 0.021 3.979 18 C -0.542 4.542 19 H 0.069 0.931 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.974 3.026 23 H -0.257 1.257 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.120 3.880 27 C 0.154 3.846 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.410 0.590 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.055 0.945 44 H -0.030 1.030 45 H 0.001 0.999 46 H 0.264 0.736 47 H 0.071 0.929 48 H 0.108 0.892 49 H 0.058 0.942 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.028 6.916 -5.061 35.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.004 3.996 3 N -0.391 5.391 4 C 0.399 3.601 5 O -0.510 6.510 6 N -0.359 5.359 7 C -0.036 4.036 8 C -0.057 4.057 9 O -0.267 6.267 10 C 0.000 4.000 11 C -0.103 4.103 12 C -0.160 4.160 13 C 0.287 3.713 14 O -0.472 6.472 15 N -0.345 5.345 16 C 0.021 3.979 17 C -0.017 4.017 18 C -0.580 4.580 19 H 0.088 0.912 20 C -0.201 4.201 21 N -0.575 5.575 22 Si 0.798 3.202 23 H -0.180 1.180 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.003 4.003 27 C 0.028 3.972 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.249 0.751 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.073 0.927 44 H -0.012 1.012 45 H 0.019 0.981 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.126 0.874 49 H 0.076 0.924 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -33.032 6.014 -4.848 33.923 hybrid contribution 1.274 -0.469 0.159 1.367 sum -31.758 5.544 -4.688 32.577 Atomic orbital electron populations 1.21941 0.91498 1.04155 1.03466 1.21214 0.96037 0.81363 1.00980 1.45195 1.04367 1.09884 1.79661 1.16168 0.83381 0.82917 0.77632 1.90945 1.56408 1.44670 1.58980 1.47324 1.07215 1.04667 1.76728 1.22181 0.94407 0.87401 0.99599 1.22148 0.85426 1.01974 0.96172 1.87870 1.30634 1.35022 1.73181 1.22477 0.95475 0.89171 0.92830 1.22487 0.95716 0.93455 0.98687 1.22112 0.94751 0.98867 1.00238 1.21729 0.87062 0.80718 0.81797 1.90649 1.70711 1.47720 1.38165 1.48705 1.24066 1.20789 1.40899 1.21409 0.81178 0.99310 0.95970 1.19246 0.93315 0.93959 0.95195 1.21576 0.91848 1.32512 1.12102 0.91249 1.26085 1.03606 0.95105 0.95323 1.70142 1.27072 1.38588 1.21686 0.85270 0.78046 0.78113 0.78817 1.18027 1.20868 1.19812 1.22009 0.89093 0.97507 0.91645 1.20566 0.80997 1.02855 0.92829 0.90855 0.90049 0.90876 0.93218 0.93291 0.75052 0.85901 0.87865 0.85977 0.91830 0.91052 0.90449 0.88067 0.88463 0.88533 0.92680 1.01195 0.98064 0.92715 0.91058 0.87402 0.92364 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.03 71.98 0.72 0.00 16 2 C 0.13 1.63 6.40 86.38 0.55 2.19 16 3 N -0.73 -8.97 5.48 -478.53 -2.62 -11.59 16 4 C 0.70 14.44 8.30 179.05 1.49 15.93 16 5 O -0.63 -20.06 15.29 -3.98 -0.06 -20.12 16 6 N -0.62 -9.73 2.62 -844.68 -2.22 -11.94 16 7 C 0.08 0.46 6.28 83.77 0.53 0.99 16 8 C 0.02 0.13 5.95 70.10 0.42 0.55 16 9 O -0.35 -4.99 10.35 -140.43 -1.45 -6.44 16 10 C 0.08 1.41 5.11 72.38 0.37 1.78 16 11 C -0.10 -2.34 0.85 -51.20 -0.04 -2.39 16 12 C -0.12 -3.74 5.94 30.21 0.18 -3.57 16 13 C 0.50 20.86 8.05 87.97 0.71 21.56 16 14 O -0.59 -30.81 17.60 -3.03 -0.05 -30.87 16 15 N -0.61 -23.79 2.95 -819.26 -2.41 -26.21 16 16 C 0.14 6.39 5.88 86.38 0.51 6.90 16 17 C 0.02 1.18 5.30 29.85 0.16 1.34 16 18 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16 19 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 20 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 21 N -0.93 -59.68 13.29 21.45 0.28 -59.40 16 22 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 26 C 0.12 3.35 6.34 86.29 0.55 3.90 16 27 C 0.15 3.13 3.88 87.37 0.34 3.47 16 28 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.20 8.14 -2.39 -0.02 0.19 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.41 1.81 6.01 -92.71 -0.56 1.25 16 34 H 0.12 -0.13 5.79 -2.39 -0.01 -0.14 16 35 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.06 0.40 6.70 -2.39 -0.02 0.39 16 38 H 0.07 1.15 6.20 -2.39 -0.01 1.14 16 39 H 0.08 1.55 7.97 -2.38 -0.02 1.53 16 40 H 0.10 2.91 7.60 -2.38 -0.02 2.90 16 41 H 0.10 3.44 6.98 -2.39 -0.02 3.42 16 42 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 43 H 0.05 2.62 7.93 -2.39 -0.02 2.60 16 44 H -0.03 -2.02 8.14 -2.39 -0.02 -2.04 16 45 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 47 H 0.07 2.07 7.86 -2.39 -0.02 2.05 16 48 H 0.11 2.52 7.87 -2.39 -0.02 2.50 16 49 H 0.06 1.56 6.79 -2.38 -0.02 1.54 16 50 H 0.10 1.68 7.87 -2.39 -0.02 1.66 16 Total: -1.00 -89.28 394.34 1.05 -88.23 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.39 Total: 9.50 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 7.16 Total: 21.09 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -6.96 Total: -109.14 kcal Atomic # 8 Polarization: -55.86 SS G_CDS: -1.57 Total: -57.43 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -89.28 1.05 -88.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273625814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.407 kcal (2) G-P(sol) polarization free energy of solvation -89.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds