Wall clock time and date at job start Sat Apr 11 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46780 * 2 1 4 4 C 1.34779 * 119.99674 * 180.02562 * 3 2 1 5 5 O 1.21275 * 120.00361 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99557 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.46797 * 179.97438 * 6 4 3 8 8 C 1.48578 * 110.99702 * 307.41049 * 7 6 4 9 9 C 1.55048 * 103.28525 * 200.55946 * 8 7 6 10 10 C 1.54121 * 102.80861 * 37.02441 * 9 8 7 11 11 C 1.48041 * 110.99723 * 190.00014 * 7 6 4 12 12 C 1.52435 * 110.11583 * 97.56102 * 10 9 8 13 13 N 1.46194 * 109.87503 * 169.18982 * 12 10 9 14 14 C 1.46501 * 118.77725 * 162.51958 * 13 12 10 15 15 C 1.52990 * 109.47054 * 89.99794 * 14 13 12 16 16 C 1.50699 * 109.47080 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99935 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00089 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99821 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47065 * 60.00154 * 20 18 16 22 22 H 1.48499 * 109.46955 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47060 * 299.99970 * 20 18 16 24 24 C 1.33849 * 122.45089 * 342.49686 * 13 12 10 25 25 O 1.21278 * 118.70231 * 182.39368 * 24 13 12 26 26 C 1.50300 * 122.60334 * 2.42593 * 24 13 12 27 27 O 1.42361 * 109.93781 * 219.20892 * 10 9 8 28 28 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47749 * 299.99865 * 1 2 3 30 30 H 1.08997 * 109.47504 * 60.00613 * 1 2 3 31 31 H 1.08996 * 109.47749 * 240.00135 * 2 1 3 32 32 H 1.08997 * 109.47504 * 119.99387 * 2 1 3 33 33 H 0.96997 * 120.00025 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.46915 * 59.99426 * 6 4 3 35 35 H 1.08997 * 109.46672 * 299.99698 * 6 4 3 36 36 H 1.08998 * 110.65822 * 319.00605 * 8 7 6 37 37 H 1.09003 * 110.65605 * 81.94908 * 8 7 6 38 38 H 1.08995 * 110.74729 * 278.69638 * 9 8 7 39 39 H 1.08997 * 110.74566 * 155.34772 * 9 8 7 40 40 H 1.08999 * 109.98001 * 26.39048 * 11 7 6 41 41 H 1.09003 * 109.97431 * 265.10789 * 11 7 6 42 42 H 1.09002 * 109.39085 * 49.09080 * 12 10 9 43 43 H 1.09000 * 109.38649 * 289.28737 * 12 10 9 44 44 H 1.08999 * 109.46999 * 210.00521 * 14 13 12 45 45 H 1.09000 * 109.46853 * 329.99857 * 14 13 12 46 46 H 1.08999 * 109.47811 * 300.00229 * 15 14 13 47 47 H 1.09000 * 109.47240 * 60.00300 * 15 14 13 48 48 H 0.96999 * 120.00176 * 179.97438 * 19 18 16 49 49 H 1.08998 * 109.40266 * 103.68102 * 26 24 13 50 50 H 1.09002 * 109.39846 * 223.50742 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7059 -0.0005 6 6 3.8456 3.0485 -0.0011 7 7 5.3145 3.0486 -0.0010 8 6 5.8469 2.2063 1.1012 9 6 7.2936 2.7329 1.2851 10 6 7.1383 4.2480 1.0496 11 6 5.8450 4.4098 0.2385 12 6 7.0248 4.9770 2.3836 13 7 7.1360 6.4194 2.1728 14 6 6.6766 7.3241 3.2295 15 6 7.8344 7.6231 4.1838 16 6 7.3620 8.5542 5.2705 17 1 6.3383 8.8979 5.2798 18 6 8.2369 8.9672 6.2530 19 7 9.4837 8.5490 6.2414 20 14 7.6511 10.1209 7.6004 21 1 6.5428 9.4804 8.3531 22 1 8.7753 10.4122 8.5259 23 1 7.1698 11.3876 6.9929 24 6 7.6423 6.9442 1.0504 25 8 7.7434 8.1498 0.9651 26 6 8.0899 6.0988 -0.1089 27 8 8.2515 4.7413 0.3121 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.3879 2.1185 -0.0004 34 1 3.4824 3.5626 0.8888 35 1 3.4819 3.5620 -0.8911 36 1 5.2659 2.3525 2.0118 37 1 5.8513 1.1549 0.8139 38 1 7.9615 2.2935 0.5443 39 1 7.6513 2.5339 2.2953 40 1 5.1217 4.9972 0.8040 41 1 6.0600 4.8981 -0.7120 42 1 7.8241 4.6454 3.0463 43 1 6.0603 4.7510 2.8384 44 1 6.3237 8.2540 2.7837 45 1 5.8627 6.8541 3.7817 46 1 8.1873 6.6931 4.6297 47 1 8.6483 8.0930 3.6317 48 1 10.0993 8.8399 6.9323 49 1 7.3427 6.1456 -0.9010 50 1 9.0410 6.4752 -0.4856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273698309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:00 Heat of formation + Delta-G solvation = -93.604235 kcal Electronic energy + Delta-G solvation = -30549.137033 eV Core-core repulsion = 26384.001357 eV Total energy + Delta-G solvation = -4165.135675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19723 -40.13832 -38.61126 -36.79654 -35.62062 -35.40159 -33.12379 -32.52607 -31.05529 -30.20382 -28.89004 -28.23653 -26.98855 -25.19106 -24.53407 -23.29496 -21.92859 -21.65435 -20.84599 -20.46677 -18.49235 -17.63543 -17.19356 -16.84764 -16.60646 -16.27395 -16.01834 -15.96365 -15.37809 -15.28254 -14.81107 -14.73715 -14.46340 -14.35083 -13.77177 -13.71470 -13.55919 -13.12260 -12.97255 -12.77217 -12.58237 -12.41635 -12.33603 -12.22970 -12.19415 -11.95906 -11.72344 -11.63535 -11.52266 -11.33322 -10.97906 -10.88393 -10.68298 -10.27447 -9.95046 -9.90111 -9.84953 -9.50381 -9.33554 -8.98624 -8.70925 -8.36310 -8.13399 -6.01222 -4.04849 2.27914 2.64093 2.88810 3.16872 3.32413 3.37065 3.39500 3.59746 3.68726 4.21311 4.34008 4.39479 4.45401 4.48722 4.59113 4.62279 4.77253 4.83593 4.86310 4.94820 5.02842 5.08993 5.14997 5.28692 5.31743 5.34535 5.41307 5.43065 5.49763 5.53575 5.54020 5.69945 5.80074 5.88265 5.94555 6.03847 6.12117 6.45538 6.49117 6.53027 6.71360 6.83020 6.94640 7.07187 7.57866 7.69426 7.86839 7.90563 7.98488 8.33590 8.49798 9.01333 9.58728 11.10141 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.002470 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.489582 B =11333.688337 C =12476.982522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.735 5.735 4 C 0.514 3.486 5 O -0.521 6.521 6 C 0.024 3.976 7 N -0.493 5.493 8 C 0.032 3.968 9 C -0.107 4.107 10 C 0.094 3.906 11 C 0.010 3.990 12 C 0.098 3.902 13 N -0.598 5.598 14 C 0.114 3.886 15 C 0.015 3.985 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.480 3.520 25 O -0.537 6.537 26 C 0.046 3.954 27 O -0.352 6.352 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.042 0.958 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.015 0.985 47 H 0.023 0.977 48 H 0.262 0.738 49 H 0.086 0.914 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.452 -17.791 -14.691 28.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.389 5.389 4 C 0.300 3.700 5 O -0.396 6.396 6 C -0.108 4.108 7 N -0.218 5.218 8 C -0.095 4.095 9 C -0.145 4.145 10 C 0.053 3.947 11 C -0.118 4.118 12 C -0.026 4.026 13 N -0.331 5.331 14 C -0.007 4.007 15 C -0.023 4.023 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C 0.267 3.733 25 O -0.415 6.415 26 C -0.033 4.033 27 O -0.270 6.270 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.061 0.939 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.033 0.967 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.104 0.896 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.339 -18.148 -15.190 28.202 hybrid contribution -1.136 1.554 1.700 2.568 sum -16.474 -16.594 -13.490 26.995 Atomic orbital electron populations 1.22010 0.94381 1.03349 1.02592 1.21292 0.94242 0.82828 1.02499 1.46054 1.07107 1.09111 1.76617 1.20518 0.82116 0.91468 0.75899 1.90660 1.54587 1.46340 1.48060 1.22271 0.90749 0.94153 1.03586 1.64777 1.04782 1.07789 1.44446 1.23607 0.93371 1.00834 0.91666 1.22532 0.97868 0.90608 1.03539 1.22253 0.86483 0.95625 0.90342 1.23592 0.96200 0.90971 1.01006 1.22069 1.03199 0.80687 0.96608 1.47725 1.61355 1.06436 1.17585 1.21950 0.98869 0.92362 0.87487 1.19341 0.93154 0.96796 0.93018 1.21034 0.96814 1.28606 1.09629 0.92642 1.25009 0.94862 0.96382 0.98062 1.69963 1.04054 1.44663 1.34393 0.86612 0.78158 0.81375 0.81569 1.20247 1.21248 1.20157 1.20754 0.78609 0.89496 0.84486 1.90756 1.54566 1.14823 1.81368 1.22881 1.04539 0.81118 0.94776 1.88105 1.39906 1.26213 1.72727 0.90719 0.91906 0.91927 0.91429 0.91456 0.76540 0.91426 0.87533 0.93942 0.86421 0.88675 0.89460 0.92313 0.88961 0.90113 0.90182 0.90661 0.91955 0.96680 0.95892 0.92871 0.89580 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 10.03 37.15 0.37 -0.14 16 2 C 0.11 0.64 6.39 -4.04 -0.03 0.62 16 3 N -0.73 -4.34 5.56 -60.29 -0.33 -4.68 16 4 C 0.51 4.58 7.54 -10.98 -0.08 4.49 16 5 O -0.52 -6.52 13.52 5.56 0.08 -6.44 16 6 C 0.02 0.19 5.52 -4.97 -0.03 0.16 16 7 N -0.49 -5.13 5.27 -231.97 -1.22 -6.35 16 8 C 0.03 0.34 5.31 -1.81 -0.01 0.33 16 9 C -0.11 -1.16 6.34 -25.06 -0.16 -1.32 16 10 C 0.09 1.16 0.96 -90.05 -0.09 1.08 16 11 C 0.01 0.11 5.44 -2.93 -0.02 0.10 16 12 C 0.10 1.41 5.12 -4.50 -0.02 1.38 16 13 N -0.60 -10.82 2.80 -174.72 -0.49 -11.31 16 14 C 0.11 2.42 5.22 -4.05 -0.02 2.40 16 15 C 0.01 0.39 5.29 -27.89 -0.15 0.25 16 16 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.34 13.29 55.43 0.74 -26.61 16 20 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 C 0.48 8.88 7.43 -11.59 -0.09 8.79 16 25 O -0.54 -12.21 16.38 5.56 0.09 -12.12 16 26 C 0.05 0.64 6.42 35.81 0.23 0.87 16 27 O -0.35 -4.94 10.34 -35.23 -0.36 -5.30 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.40 1.29 8.47 -40.82 -0.35 0.95 16 34 H 0.07 0.45 7.81 -51.93 -0.41 0.04 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.42 8.01 -51.93 -0.42 0.01 16 37 H 0.12 1.40 5.98 -51.93 -0.31 1.09 16 38 H 0.09 1.06 8.07 -51.93 -0.42 0.64 16 39 H 0.09 0.86 7.69 -51.93 -0.40 0.46 16 40 H 0.06 0.62 7.02 -51.93 -0.36 0.26 16 41 H 0.09 0.99 6.08 -51.93 -0.32 0.68 16 42 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.08 1.00 7.83 -51.93 -0.41 0.59 16 44 H 0.07 1.70 7.30 -51.93 -0.38 1.32 16 45 H 0.06 1.19 7.94 -51.93 -0.41 0.78 16 46 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 49 H 0.09 0.98 6.48 -51.93 -0.34 0.64 16 50 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -36.66 395.53 -9.33 -45.99 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.27 Total: -1.32 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.49 Total: 5.34 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -1.31 Total: -48.95 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.20 Total: -23.87 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.66 -9.33 -45.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273698309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.613 kcal (2) G-P(sol) polarization free energy of solvation -36.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds