Wall clock time and date at job start Sat Apr 11 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.47040 * 2 1 4 4 C 1.34771 * 119.99939 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99941 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00002 * 180.02562 * 4 3 2 7 7 N 1.46503 * 109.46970 * 179.97438 * 6 4 3 8 8 C 1.46198 * 118.77624 * 89.99906 * 7 6 4 9 9 C 1.52448 * 109.93248 * 162.41754 * 8 7 6 10 10 C 1.54104 * 110.13273 * 169.32246 * 9 8 7 11 11 C 1.55042 * 102.81169 * 140.91031 * 10 9 8 12 12 N 1.48583 * 103.28751 * 322.98932 * 11 10 9 13 13 C 1.46898 * 110.99699 * 159.44307 * 12 11 10 14 14 C 1.53003 * 109.47063 * 52.58983 * 13 12 11 15 15 C 1.50703 * 109.47038 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.48029 * 105.82868 * 38.92331 * 12 11 10 24 24 O 1.42574 * 110.10182 * 47.75469 * 9 8 7 25 25 C 1.43037 * 113.17004 * 293.24053 * 24 9 8 26 26 C 1.33842 * 118.77458 * 269.97693 * 7 6 4 27 27 O 1.21280 * 118.69898 * 2.39880 * 26 7 6 28 28 H 1.08999 * 109.47533 * 59.99840 * 1 2 3 29 29 H 1.08998 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46979 * 299.99374 * 1 2 3 31 31 H 1.09006 * 109.46618 * 240.00629 * 2 1 3 32 32 H 1.08997 * 109.46917 * 120.00578 * 2 1 3 33 33 H 0.96999 * 119.99752 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.46902 * 60.00001 * 6 4 3 35 35 H 1.09002 * 109.47078 * 299.99536 * 6 4 3 36 36 H 1.09006 * 109.39514 * 42.28051 * 8 7 6 37 37 H 1.09002 * 109.39604 * 282.55977 * 8 7 6 38 38 H 1.08998 * 110.74504 * 259.23826 * 10 9 8 39 39 H 1.08999 * 110.74927 * 22.39760 * 10 9 8 40 40 H 1.09004 * 110.65418 * 204.54146 * 11 10 9 41 41 H 1.08998 * 110.66046 * 81.44322 * 11 10 9 42 42 H 1.08996 * 109.47442 * 292.59103 * 13 12 11 43 43 H 1.08996 * 109.46826 * 172.59101 * 13 12 11 44 44 H 1.09003 * 109.46825 * 60.00196 * 14 13 12 45 45 H 1.08996 * 109.47396 * 299.99770 * 14 13 12 46 46 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 47 47 H 1.09008 * 109.98007 * 94.11079 * 23 12 11 48 48 H 1.09004 * 109.97387 * 215.35612 * 23 12 11 49 49 H 1.09000 * 109.38090 * 288.50466 * 25 24 9 50 50 H 1.08997 * 109.41210 * 168.76840 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0015 6 6 3.8457 3.0483 0.0001 7 7 5.3108 3.0483 -0.0001 8 6 6.0144 3.0488 -1.2815 9 6 7.4621 3.4816 -1.0793 10 6 8.2751 3.2308 -2.3642 11 6 9.1980 4.4746 -2.4354 12 7 8.3290 5.5734 -1.9401 13 6 9.1331 6.7120 -1.4764 14 6 10.1147 7.1243 -2.5753 15 6 10.9391 8.2928 -2.0998 16 1 10.7786 8.7009 -1.1127 17 6 11.8974 8.8417 -2.9252 18 7 12.0925 8.3452 -4.1273 19 14 12.9197 10.2896 -2.3354 20 1 12.2374 11.5578 -2.6980 21 1 14.2574 10.2458 -2.9789 22 1 13.0773 10.2164 -0.8606 23 6 7.5393 4.9944 -0.8300 24 8 8.0390 2.7682 0.0120 25 6 7.4538 3.1008 1.2740 26 6 5.9551 3.0482 1.1730 27 8 5.3039 3.0037 2.1952 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.3880 2.1185 0.0004 34 1 3.4828 3.5616 0.8905 35 1 3.4820 3.5627 -0.8895 36 1 5.5219 3.7409 -1.9647 37 1 5.9927 2.0454 -1.7069 38 1 8.8640 2.3178 -2.2765 39 1 7.6190 3.1832 -3.2333 40 1 9.5094 4.6640 -3.4627 41 1 10.0649 4.3479 -1.7870 42 1 9.6875 6.4254 -0.5829 43 1 8.4759 7.5497 -1.2432 44 1 9.5602 7.4110 -3.4688 45 1 10.7718 6.2866 -2.8085 46 1 11.5618 7.5931 -4.4332 47 1 8.0346 5.1903 0.1211 48 1 6.5371 5.4230 -0.8229 49 1 7.7622 4.1058 1.5621 50 1 7.7910 2.3899 2.0283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:18 Heat of formation + Delta-G solvation = -102.449080 kcal Electronic energy + Delta-G solvation = -30523.367909 eV Core-core repulsion = 26357.848693 eV Total energy + Delta-G solvation = -4165.519217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48671 -39.93587 -38.92318 -36.90658 -35.95798 -35.34881 -33.82679 -32.09251 -31.41709 -29.58473 -29.11518 -28.71307 -26.72840 -25.57807 -23.90587 -23.37141 -22.26498 -21.66169 -20.77467 -20.12152 -18.70209 -18.00898 -17.72237 -17.18497 -16.76215 -16.24538 -16.19593 -15.93517 -15.68808 -15.21112 -14.89020 -14.52931 -14.42857 -14.14913 -13.93806 -13.76574 -13.71680 -13.48390 -12.99792 -12.96769 -12.76808 -12.58230 -12.44513 -12.32901 -12.10099 -11.90249 -11.84202 -11.40548 -11.29564 -11.19162 -10.96092 -10.80882 -10.61593 -10.38095 -10.17231 -10.11976 -9.75970 -9.56183 -9.49837 -9.06594 -8.61379 -8.34485 -8.05970 -6.38209 -4.07318 2.13877 2.29663 2.39123 2.94090 3.39108 3.42746 3.46232 3.61918 3.99297 4.23751 4.32438 4.42373 4.43326 4.55407 4.56254 4.59516 4.64247 4.71744 4.84847 4.92199 4.94907 5.09464 5.18092 5.28415 5.32598 5.35998 5.39782 5.42358 5.48938 5.53685 5.58691 5.69670 5.83936 5.91610 5.98462 6.00452 6.11412 6.21786 6.26728 6.65891 6.71927 7.01201 7.05433 7.16035 7.19569 7.44871 7.59767 7.73416 7.86511 8.19946 8.44146 8.86585 9.64775 11.02917 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026164 B = 0.002099 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.935330 B =13337.199939 C =13513.300956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.733 5.733 4 C 0.498 3.502 5 O -0.526 6.526 6 C 0.091 3.909 7 N -0.585 5.585 8 C 0.101 3.899 9 C 0.092 3.908 10 C -0.106 4.106 11 C 0.041 3.959 12 N -0.513 5.513 13 C 0.060 3.940 14 C 0.012 3.988 15 C -0.604 4.604 16 H 0.048 0.952 17 C 0.016 3.984 18 N -0.912 5.912 19 Si 1.071 2.929 20 H -0.288 1.288 21 H -0.284 1.284 22 H -0.289 1.289 23 C 0.010 3.990 24 O -0.354 6.354 25 C 0.049 3.951 26 C 0.499 3.501 27 O -0.544 6.544 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.025 0.975 43 H 0.065 0.935 44 H 0.016 0.984 45 H 0.010 0.990 46 H 0.269 0.731 47 H 0.054 0.946 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.300 -15.054 6.525 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.388 5.388 4 C 0.282 3.718 5 O -0.401 6.401 6 C -0.036 4.036 7 N -0.317 5.317 8 C -0.022 4.022 9 C 0.052 3.948 10 C -0.144 4.144 11 C -0.087 4.087 12 N -0.238 5.238 13 C -0.067 4.067 14 C -0.026 4.026 15 C -0.643 4.643 16 H 0.066 0.934 17 C -0.188 4.188 18 N -0.548 5.548 19 Si 0.900 3.100 20 H -0.214 1.214 21 H -0.210 1.210 22 H -0.215 1.215 23 C -0.119 4.119 24 O -0.272 6.272 25 C -0.030 4.030 26 C 0.288 3.712 27 O -0.421 6.421 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.083 0.917 44 H 0.034 0.966 45 H 0.028 0.972 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.996 -14.647 6.190 26.338 hybrid contribution -1.357 -0.806 1.210 1.989 sum -22.353 -15.453 7.400 28.164 Atomic orbital electron populations 1.22006 0.94298 1.03337 1.02582 1.21292 0.94267 0.82922 1.02437 1.46028 1.07049 1.09071 1.76618 1.21224 0.82339 0.92283 0.75940 1.90732 1.55222 1.46086 1.48042 1.21361 0.81963 0.94268 1.05991 1.47069 1.05157 1.72801 1.06716 1.22210 0.91999 1.03214 0.84752 1.22365 0.91640 0.91682 0.89121 1.22497 0.98342 0.99737 0.93846 1.23220 0.94641 0.88865 1.01963 1.65002 1.23360 1.06647 1.28763 1.22388 0.94842 0.91202 0.98250 1.19277 0.93017 0.96438 0.93821 1.22017 1.21963 1.17169 1.03130 0.93392 1.25826 0.96960 1.01694 0.94296 1.70752 1.41059 1.24991 1.17986 0.83510 0.76357 0.75159 0.74998 1.21430 1.20963 1.21545 1.23529 1.00429 0.92538 0.95356 1.88169 1.60211 1.64829 1.13982 1.22797 0.87533 1.04461 0.88252 1.20996 0.91891 0.75340 0.82998 1.90715 1.67464 1.49928 1.34021 0.91882 0.90738 0.91901 0.91506 0.91569 0.76514 0.86511 0.87061 0.88855 0.90090 0.89377 0.89053 0.89166 0.93099 0.95660 0.91676 0.96591 0.97153 0.92027 0.92826 0.90037 0.88830 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 10.03 37.16 0.37 -0.22 16 2 C 0.11 0.76 6.39 -4.04 -0.03 0.73 16 3 N -0.73 -5.07 5.56 -60.29 -0.33 -5.40 16 4 C 0.50 5.20 7.89 -10.99 -0.09 5.11 16 5 O -0.53 -7.92 16.43 5.55 0.09 -7.83 16 6 C 0.09 0.79 5.77 -5.19 -0.03 0.76 16 7 N -0.59 -6.67 2.29 -176.07 -0.40 -7.07 16 8 C 0.10 1.06 5.03 -4.49 -0.02 1.04 16 9 C 0.09 1.14 0.96 -90.06 -0.09 1.06 16 10 C -0.11 -1.29 6.32 -25.08 -0.16 -1.45 16 11 C 0.04 0.65 5.11 -1.81 -0.01 0.64 16 12 N -0.51 -8.75 5.40 -230.54 -1.25 -10.00 16 13 C 0.06 1.25 4.97 -3.82 -0.02 1.23 16 14 C 0.01 0.30 3.95 -27.88 -0.11 0.19 16 15 C -0.60 -17.12 9.11 -34.44 -0.31 -17.43 16 16 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 17 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 18 N -0.91 -27.74 13.65 55.43 0.76 -26.98 16 19 Si 1.07 25.28 29.90 -169.99 -5.08 20.20 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.01 0.14 5.38 -2.93 -0.02 0.13 16 24 O -0.35 -4.78 10.34 -35.23 -0.36 -5.14 16 25 C 0.05 0.60 6.42 35.81 0.23 0.83 16 26 C 0.50 6.75 7.42 -11.59 -0.09 6.66 16 27 O -0.54 -8.69 16.38 5.56 0.09 -8.60 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 1.48 8.47 -40.82 -0.35 1.13 16 34 H 0.12 0.98 7.29 -51.93 -0.38 0.61 16 35 H 0.11 0.57 7.94 -51.93 -0.41 0.15 16 36 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 37 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 38 H 0.09 1.02 8.06 -51.93 -0.42 0.60 16 39 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 40 H 0.09 1.50 7.68 -51.93 -0.40 1.10 16 41 H 0.05 0.88 7.99 -51.93 -0.41 0.46 16 42 H 0.03 0.53 7.82 -51.93 -0.41 0.13 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.02 0.42 8.01 -51.93 -0.42 0.01 16 45 H 0.01 0.27 6.66 -51.93 -0.35 -0.08 16 46 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 47 H 0.05 0.78 5.62 -51.92 -0.29 0.49 16 48 H 0.08 1.05 7.62 -51.93 -0.40 0.66 16 49 H 0.09 1.06 6.53 -51.93 -0.34 0.72 16 50 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -36.83 396.95 -9.23 -46.06 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.26 Total: -0.85 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.46 Total: -0.37 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -1.23 Total: -49.45 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.18 Total: -21.57 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.83 -9.23 -46.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.394 kcal (2) G-P(sol) polarization free energy of solvation -36.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds